bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-22_CDS_annotation_glimmer3.pl_2_1
Length=54
Score E
Sequences producing significant alignments: (Bits) Value
Gokush_Human_gut_33_003_Microviridae_AG062_putative.VP2 53.9 4e-12
Gokush_Human_feces_A_020_Microviridae_AG0263_putative.VP2 42.4 4e-08
Gokush_Human_feces_A_019_Microviridae_AG0437_putative.VP2 42.4 4e-08
Gokush_Human_feces_E_017_Microviridae_AG0128_putative.VP2 42.4 5e-08
Gokush_gi|12085145|ref|NP_073537.1|_putative_replication_initia... 21.6 0.55
Gokush_Human_feces_D_014_Microviridae_AG029_putative.VP1 19.6 2.5
Gokush_Human_gut_36_019_Microviridae_AG0279_putative.VP1 19.2 3.6
Gokush_Human_gut_37_015_Microviridae_AG033_putative.VP1 19.2 3.7
Gokush_Human_gut_35_025_Microviridae_AG0361_putative.VP1 19.2 3.7
Gokush_Human_gut_34_012_Microviridae_AG058_putative.VP1 19.2 3.7
> Gokush_Human_gut_33_003_Microviridae_AG062_putative.VP2
Length=295
Score = 53.9 bits (128), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 23/25 (92%), Positives = 24/25 (96%), Gaps = 0/25 (0%)
Query 30 QDRSIKPQDKTGSYGEKRKPGDYLK 54
QDR+IKPQDKTG YGEKRKPGDYLK
Sbjct 271 QDRAIKPQDKTGKYGEKRKPGDYLK 295
> Gokush_Human_feces_A_020_Microviridae_AG0263_putative.VP2
Length=300
Score = 42.4 bits (98), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (2%)
Query 2 KTLTKVGSDTSEAIKDATAKTEKGKGAEQDRSIKPQDKTGSYGEKRKPGDYLK 54
K + V +E DA K +K DR+IK DKTGSYG++RKPGDYL+
Sbjct 249 KNVEVVTDKVAEPSYDA-GKAQKRVAGSTDRAIKATDKTGSYGQQRKPGDYLR 300
> Gokush_Human_feces_A_019_Microviridae_AG0437_putative.VP2
Length=300
Score = 42.4 bits (98), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 0/35 (0%)
Query 20 AKTEKGKGAEQDRSIKPQDKTGSYGEKRKPGDYLK 54
K +K DR+IK DKTGSYG+KR+PGDYL+
Sbjct 266 GKAQKRVAGSTDRAIKATDKTGSYGQKRQPGDYLR 300
> Gokush_Human_feces_E_017_Microviridae_AG0128_putative.VP2
Length=300
Score = 42.4 bits (98), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (2%)
Query 2 KTLTKVGSDTSEAIKDATAKTEKGKGAEQDRSIKPQDKTGSYGEKRKPGDYLK 54
K + V +E DA K +K DR+IK DKTGSYG++RKPGDYL+
Sbjct 249 KNVEVVTDKVAEPSYDA-GKAQKRVAGSTDRAIKATDKTGSYGQQRKPGDYLR 300
> Gokush_gi|12085145|ref|NP_073537.1|_putative_replication_initiation_protein_[Bdellovibrio_phage_phiMH2K]
Length=315
Score = 21.6 bits (44), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/39 (36%), Positives = 17/39 (44%), Gaps = 1/39 (3%)
Query 10 DTSEAIKDATAKTEKGKGAEQDRSIKPQDKTGSYGEKRK 48
D IK K +G E R + P TG YG+K K
Sbjct 84 DFDLFIKRLNEKLNRGLSKENRRPL-PYMVTGEYGDKTK 121
> Gokush_Human_feces_D_014_Microviridae_AG029_putative.VP1
Length=578
Score = 19.6 bits (39), Expect = 2.5, Method: Composition-based stats.
Identities = 8/19 (42%), Positives = 9/19 (47%), Gaps = 0/19 (0%)
Query 36 PQDKTGSYGEKRKPGDYLK 54
PQ TG+Y G Y K
Sbjct 396 PQGNTGAYSLTGSQGSYFK 414
> Gokush_Human_gut_36_019_Microviridae_AG0279_putative.VP1
Length=582
Score = 19.2 bits (38), Expect = 3.6, Method: Composition-based stats.
Identities = 6/8 (75%), Positives = 7/8 (88%), Gaps = 0/8 (0%)
Query 44 GEKRKPGD 51
GEK+ PGD
Sbjct 101 GEKKNPGD 108
> Gokush_Human_gut_37_015_Microviridae_AG033_putative.VP1
Length=582
Score = 19.2 bits (38), Expect = 3.7, Method: Composition-based stats.
Identities = 6/8 (75%), Positives = 7/8 (88%), Gaps = 0/8 (0%)
Query 44 GEKRKPGD 51
GEK+ PGD
Sbjct 101 GEKKNPGD 108
> Gokush_Human_gut_35_025_Microviridae_AG0361_putative.VP1
Length=582
Score = 19.2 bits (38), Expect = 3.7, Method: Composition-based stats.
Identities = 6/8 (75%), Positives = 7/8 (88%), Gaps = 0/8 (0%)
Query 44 GEKRKPGD 51
GEK+ PGD
Sbjct 101 GEKKNPGD 108
> Gokush_Human_gut_34_012_Microviridae_AG058_putative.VP1
Length=582
Score = 19.2 bits (38), Expect = 3.7, Method: Composition-based stats.
Identities = 6/8 (75%), Positives = 7/8 (88%), Gaps = 0/8 (0%)
Query 44 GEKRKPGD 51
GEK+ PGD
Sbjct 101 GEKKNPGD 108
Lambda K H a alpha
0.300 0.122 0.322 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3709748