bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-23_CDS_annotation_glimmer3.pl_2_6
Length=70
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_D_022_Microviridae_AG0392_putative.VP1 21.9 0.72
Alpavirinae_Human_gut_22_017_Microviridae_AG0394_putative.pepti... 21.2 1.0
unnamed protein product 21.2 1.2
Gokush_Human_feces_D_014_Microviridae_AG028_putative.VP3 21.2 1.2
Pichovirinae_66_Microbialites_001_Microviridae_AG0131_putative.VP4 20.4 2.2
unnamed protein product 19.6 3.7
Pichovirinae_JCVI_003_Microviridae_AG0344_putative.VP1 19.6 5.3
Gokush_Human_feces_E_009_Microviridae_AG0285_putative.VP1 19.6 5.6
Alpavirinae_Human_feces_D_022_Microviridae_AG0391_hypothetical.... 18.9 7.8
Alpavirinae_Human_feces_A_033_Microviridae_AG0384_hypothetical.... 18.9 7.8
> Alpavirinae_Human_feces_D_022_Microviridae_AG0392_putative.VP1
Length=589
Score = 21.9 bits (45), Expect = 0.72, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query 24 KRFTVIFRFRTYEQASDCLRFLLENYPGIYFD 55
+R T F+ R YE S C L ++ +++D
Sbjct 528 QRLTAFFK-RIYESPSSCPYILCGDFNYVFYD 558
> Alpavirinae_Human_gut_22_017_Microviridae_AG0394_putative.peptidase.M15A
Length=102
Score = 21.2 bits (43), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 9/16 (56%), Gaps = 0/16 (0%)
Query 26 FTVIFRFRTYEQASDC 41
FTV FRT EQ C
Sbjct 19 FTVTSAFRTKEQNEAC 34
> unnamed protein product
Length=102
Score = 21.2 bits (43), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 9/16 (56%), Gaps = 0/16 (0%)
Query 26 FTVIFRFRTYEQASDC 41
FTV FRT EQ C
Sbjct 19 FTVTSAFRTEEQNDAC 34
> Gokush_Human_feces_D_014_Microviridae_AG028_putative.VP3
Length=174
Score = 21.2 bits (43), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 20/53 (38%), Gaps = 16/53 (30%)
Query 23 GKRFTVIFRFRTYEQASDCL---------RFLLENYP-------GIYFDIKDV 59
K V+ R YE+ +CL R E P GIY DI D+
Sbjct 55 AKVLKVVGRENIYEKIQECLEPTKIENIIRRFEEGDPTALGHESGIYADISDM 107
> Pichovirinae_66_Microbialites_001_Microviridae_AG0131_putative.VP4
Length=291
Score = 20.4 bits (41), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/40 (28%), Positives = 18/40 (45%), Gaps = 0/40 (0%)
Query 29 IFRFRTYEQASDCLRFLLENYPGIYFDIKDVSFSHLDKKS 68
+FR + + SD F+ Y + I + F LDK +
Sbjct 52 VFRLMQHSKVSDNSHFVTLTYDTRHVPITENGFMTLDKDA 91
> unnamed protein product
Length=130
Score = 19.6 bits (39), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 8/28 (29%), Positives = 15/28 (54%), Gaps = 0/28 (0%)
Query 38 ASDCLRFLLENYPGIYFDIKDVSFSHLD 65
A + ++L YP Y ++F+H+D
Sbjct 93 AKEVQKYLKNKYPNKYGIGSYLNFTHID 120
> Pichovirinae_JCVI_003_Microviridae_AG0344_putative.VP1
Length=505
Score = 19.6 bits (39), Expect = 5.3, Method: Composition-based stats.
Identities = 7/16 (44%), Positives = 9/16 (56%), Gaps = 0/16 (0%)
Query 7 HRFELAYSPFFVRKRV 22
HRF + FFV R+
Sbjct 68 HRFNVTMHYFFVPNRI 83
> Gokush_Human_feces_E_009_Microviridae_AG0285_putative.VP1
Length=559
Score = 19.6 bits (39), Expect = 5.6, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (3%)
Query 25 RFTVIFRFRTYEQASDCLRFLL-ENYPGIYFDIK 57
+F F +T D + F + E PG FD+K
Sbjct 22 KFDRSFSLKTSFNVGDIVPFYVDEVLPGDTFDVK 55
> Alpavirinae_Human_feces_D_022_Microviridae_AG0391_hypothetical.protein.BACEGG.02723
Length=367
Score = 18.9 bits (37), Expect = 7.8, Method: Composition-based stats.
Identities = 7/15 (47%), Positives = 9/15 (60%), Gaps = 0/15 (0%)
Query 31 RFRTYEQASDCLRFL 45
R TY QA + R+L
Sbjct 309 RILTYRQAEELARYL 323
> Alpavirinae_Human_feces_A_033_Microviridae_AG0384_hypothetical.protein.BACEGG.02723
Length=367
Score = 18.9 bits (37), Expect = 7.8, Method: Composition-based stats.
Identities = 7/15 (47%), Positives = 9/15 (60%), Gaps = 0/15 (0%)
Query 31 RFRTYEQASDCLRFL 45
R TY QA + R+L
Sbjct 309 RILTYRQAEELARYL 323
Lambda K H a alpha
0.334 0.147 0.453 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3733230