bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-29_CDS_annotation_glimmer3.pl_2_2

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Alpavirinae_Human_gut_21_005_Microviridae_AG016_putative.VP1        26.6    0.24
  Gokush_Human_gut_33_018_Microviridae_AG0173_putative.nonstructu...  21.6    2.7  
  Alpavirinae_Human_gut_21_005_Microviridae_AG014_hypothetical.pr...  21.9    3.4  
  Alpavirinae_Human_feces_C_010_Microviridae_AG0200_hypothetical....  21.9    3.9  


> Alpavirinae_Human_gut_21_005_Microviridae_AG016_putative.VP1
Length=742

 Score = 26.6 bits (57),  Expect = 0.24, Method: Composition-based stats.
 Identities = 14/43 (33%), Positives = 23/43 (53%), Gaps = 2/43 (5%)

Query  122  RSHLGHGILHGRNPGGLSVLTHELTPMLPYDTVGHEVKIGVQV  164
            R ++ HG+L G  PG  S+ T E     P +T G+  ++ V +
Sbjct  221  RDYVSHGLLVGITPGNTSIHTWEFNA--PVNTKGNLTRMVVTL  261


> Gokush_Human_gut_33_018_Microviridae_AG0173_putative.nonstructural.protein
Length=68

 Score = 21.6 bits (44),  Expect = 2.7, Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 0/20 (0%)

Query  210  TMVTPKSATSNIKVSRIKRK  229
            T V P SA  N KV  IK +
Sbjct  2    TEVNPDSAIRNFKVGAIKNQ  21


> Alpavirinae_Human_gut_21_005_Microviridae_AG014_hypothetical.protein
Length=107

 Score = 21.9 bits (45),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 11/17 (65%), Gaps = 0/17 (0%)

Query  192  NFIHIEGDNVSDIETEF  208
            NFI + GD   +IE +F
Sbjct  52   NFIDVNGDASWNIEPQF  68


> Alpavirinae_Human_feces_C_010_Microviridae_AG0200_hypothetical.protein
Length=127

 Score = 21.9 bits (45),  Expect = 3.9, Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 11/17 (65%), Gaps = 0/17 (0%)

Query  192  NFIHIEGDNVSDIETEF  208
            NFI + GD   +IE +F
Sbjct  72   NFIDVNGDASWNIEPQF  88



Lambda      K        H        a         alpha
   0.315    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 19379907