bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-2_CDS_annotation_glimmer3.pl_2_6

Length=63
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Gokush_gi|12085145|ref|NP_073537.1|_putative_replication_initia...  19.2    4.6
  Gokush_Bourget_504_Microviridae_AG0259_putative.VP3                 18.9    6.8


> Gokush_gi|12085145|ref|NP_073537.1|_putative_replication_initiation_protein_[Bdellovibrio_phage_phiMH2K]
Length=315

 Score = 19.2 bits (38),  Expect = 4.6, Method: Composition-based stats.
 Identities = 7/18 (39%), Positives = 12/18 (67%), Gaps = 0/18 (0%)

Query  2    EKQVLKKEEKTFVNGFIV  19
            +K + K  E+TF  G++V
Sbjct  209  KKWIEKYHEQTFSRGYVV  226


> Gokush_Bourget_504_Microviridae_AG0259_putative.VP3
Length=153

 Score = 18.9 bits (37),  Expect = 6.8, Method: Compositional matrix adjust.
 Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 0/21 (0%)

Query  17  FIVSVQLPGVPPKQSFVDTSS  37
           F ++ QLPG P    + D S 
Sbjct  50  FNITGQLPGQPLTPRYGDFSG  70



Lambda      K        H        a         alpha
   0.312    0.127    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3708839