bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-32_CDS_annotation_glimmer3.pl_2_1
Length=60
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_gut_32_012_Microviridae_AG0206_putative.VP4 20.4 1.5
Alpavirinae_Human_gut_31_126_Microviridae_AG0305_putative.VP4 20.4 1.5
Gokush_gi|47566147|ref|YP_022485.1|_nonstructural_protein_[Chla... 18.9 5.6
Pichovirinae_59_Coral_002_Microviridae_AG0338_putative.VP4 18.9 5.8
Gokush_gi|19387569|ref|NP_598320.1|_capsid_protein_[Spiroplasma... 18.9 6.1
Gokush_gi|9629152|ref|NP_044321.1|_hypothetical_protein_chp1p10... 18.9 7.2
Gokush_gi|9629151|ref|NP_044320.1|_hypothetical_protein_chp1p09... 18.9 7.3
unnamed protein product 18.5 8.9
> Alpavirinae_Human_gut_32_012_Microviridae_AG0206_putative.VP4
Length=306
Score = 20.4 bits (41), Expect = 1.5, Method: Composition-based stats.
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 0/20 (0%)
Query 13 INAFRYSMERVFGNSSDVKD 32
+N FRYS+ R + + KD
Sbjct 247 VNNFRYSIPRYWRTACFTKD 266
> Alpavirinae_Human_gut_31_126_Microviridae_AG0305_putative.VP4
Length=306
Score = 20.4 bits (41), Expect = 1.5, Method: Composition-based stats.
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 0/20 (0%)
Query 13 INAFRYSMERVFGNSSDVKD 32
+N FRYS+ R + + KD
Sbjct 247 VNNFRYSIPRYWRTACFTKD 266
> Gokush_gi|47566147|ref|YP_022485.1|_nonstructural_protein_[Chlamydia_phage_3]
Length=315
Score = 18.9 bits (37), Expect = 5.6, Method: Composition-based stats.
Identities = 7/12 (58%), Positives = 11/12 (92%), Gaps = 0/12 (0%)
Query 17 RYSMERVFGNSS 28
RYS+++V G+SS
Sbjct 192 RYSLKKVNGDSS 203
> Pichovirinae_59_Coral_002_Microviridae_AG0338_putative.VP4
Length=274
Score = 18.9 bits (37), Expect = 5.8, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 15/29 (52%), Gaps = 0/29 (0%)
Query 24 FGNSSDVKDVASELVKRMGLLLMRPDIKE 52
F + D S + K+MG+ + P +KE
Sbjct 165 FNDQDDRMPEFSLMSKKMGMGYLTPQMKE 193
> Gokush_gi|19387569|ref|NP_598320.1|_capsid_protein_[Spiroplasma_phage_4]
Length=553
Score = 18.9 bits (37), Expect = 6.1, Method: Composition-based stats.
Identities = 7/14 (50%), Positives = 10/14 (71%), Gaps = 0/14 (0%)
Query 20 MERVFGNSSDVKDV 33
+E+ FG +SD DV
Sbjct 96 LEKFFGENSDSWDV 109
> Gokush_gi|9629152|ref|NP_044321.1|_hypothetical_protein_chp1p10_[Chlamydia_phage_1]
Length=206
Score = 18.9 bits (37), Expect = 7.2, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 6/26 (23%)
Query 13 INAFRYSMERVFGNSSDVKDVASELV 38
+N FRY R F KD+ +LV
Sbjct 111 LNGFRYGFPRYF------KDLLRKLV 130
> Gokush_gi|9629151|ref|NP_044320.1|_hypothetical_protein_chp1p09_[Chlamydia_phage_1]
Length=399
Score = 18.9 bits (37), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 6/12 (50%), Positives = 7/12 (58%), Gaps = 0/12 (0%)
Query 13 INAFRYSMERVF 24
+N FRY R F
Sbjct 304 LNGFRYGFPRYF 315
> unnamed protein product
Length=102
Score = 18.5 bits (36), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/44 (32%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query 3 ALRKLRQDNDINAFRYSMERVFGNSSDVKDVASELVKRMGLLLM 46
A R Q++ N + S + + G++ D+K V S + G LLM
Sbjct 24 AFRTEEQNDACNGSKTS-QHLTGDAIDLKPVDSSVD---GFLLM 63
Lambda K H a alpha
0.321 0.136 0.371 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3613148