bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-32_CDS_annotation_glimmer3.pl_2_3
Length=544
Score E
Sequences producing significant alignments: (Bits) Value
Pichovirinae_59_Coral_002_Microviridae_AG0339_putative.VP1 491 3e-170
Pichovirinae_Pavin_723_Microviridae_AG0327_putative.VP1 471 3e-162
Pichovirinae_Bourget_523_Microviridae_AG0333_putative.VP1 431 1e-146
Pichovirinae_JCVI_003_Microviridae_AG0344_putative.VP1 419 2e-142
Pichovirinae_66_Microbialites_001_Microviridae_AG0132_putative.VP1 395 6e-133
Pichovirinae_Pavin_279_Microviridae_AG0271_putative.VP1 382 9e-128
Gokush_gi|9629155|ref|NP_044312.1|_VP1_[Chlamydia_phage_1] 336 5e-109
Gokush_Bourget_309_Microviridae_AG0288_putative.VP1 333 9e-109
Gokush_Human_feces_C_031_Microviridae_AG0433_putative.VP1 324 4e-105
Gokush_JCVI_001_Microviridae_AG025_putative.VP1 324 9e-105
> Pichovirinae_59_Coral_002_Microviridae_AG0339_putative.VP1
Length=522
Score = 491 bits (1265), Expect = 3e-170, Method: Compositional matrix adjust.
Identities = 258/553 (47%), Positives = 347/553 (63%), Gaps = 48/553 (9%)
Query 1 MKRPRRNAFNLSYESKLTLNMGELVPIMCMPVVPGDKFRVKTESLVRLAPLVAPMMHRVN 60
M RP+ N F+LS++ K + +GEL+PI M VPGDKF +K +L R APL+ P+MH+ +
Sbjct 9 MPRPQTNTFDLSHDRKFSGKIGELMPITVMEAVPGDKFNIKATNLTRFAPLITPIMHQAS 68
Query 61 VFTHYFFVPNRLVWNEWEDFITKGVDGEDMPMFPKIQINQDSHLVSSASLIKEYFGDSSL 120
V+ H+FFVPNR++W+ WEDFI+ G DG P FP I I ++ + +L
Sbjct 69 VYCHFFFVPNRILWSNWEDFISGGEDGLADPTFPTINITTPTNGYAVGALA--------- 119
Query 121 WDYLGLPTLSACGNKSYDVVNGVKVPSGFQVSALPFRAYQLIYNEYYRDQNLTEPIDFTL 180
DYLGLPT G ++ VSALPF AYQ IY++YYRD+NL + +D TL
Sbjct 120 -DYLGLPT-------------GTQIDG---VSALPFAAYQKIYDDYYRDENLIDKVDITL 162
Query 181 GSGTTVGGDQLMALMSLRRRAWEKDYFTSALPWLQRGPEVTVPVQGAGGSMDVVYERQSD 240
GT G D + L ++R+RAW+ DYFTSALPW QRGPE T+P+ G S + + +
Sbjct 163 SDGTQSGADAI-ELGTMRKRAWQHDYFTSALPWTQRGPEATIPL---GTSAPITWSNNTA 218
Query 241 SQKWVDSSGREFENGRAYDITMTRANDPNSALMVAVNGGTNNRAP---ELDPNGTLKVNV 297
+ V N + + D SAL +G P LD + + +
Sbjct 219 TATIV-------RNNTSGNPIAGYTFDGASALYTGGSGQLIADLPTPVSLDFDNSDHLFA 271
Query 298 DEMGI---NINDLRTSNALQRWFERNARGGSRYIEQILSHFGVRSSDARLQRPQFLGGGR 354
D G +INDLR + LQ W ERNARGG+RYIE I++HFGVRSSDARLQRP+FLGG
Sbjct 272 DLAGATASSINDLRRAFRLQEWLERNARGGARYIEIIMAHFGVRSSDARLQRPEFLGGSA 331
Query 355 MPISVSEVLQTSSTD-ETSPQANMAGHGISAGINNGFKHYFEEHGYIIGIMSITPRSGYQ 413
PI++SEVLQTS+ + E +PQ NMAGHG+S G +N + EEHGYIIGIMS+ P++ YQ
Sbjct 332 TPITISEVLQTSANNTEPTPQGNMAGHGVSVGSSNYVSYKCEEHGYIIGIMSVMPKTAYQ 391
Query 414 QGVPRDFTKFDNMDFYFPEFAHLSEQEIKNQELFVSEDAAYNNGTFGYTPRYAEYKYHPS 473
QG+P+ F K D D+Y+P FA++ EQ I N+EL+ ++ A + TFGYTPRYAEYKY PS
Sbjct 392 QGIPKHFKKLDKFDYYWPSFANIGEQPILNEELY-HQNNATDTETFGYTPRYAEYKYIPS 450
Query 474 EAHGDFRSNLSFWHLNRIFEDKPNLNTTFVECRPSN--RVFATSETEDDKFWVQMYQDVK 531
HG+FR +L FWH+ RIF KP LN F+EC + RVFA + + + +V ++ +VK
Sbjct 451 TVHGEFRDSLDFWHMGRIFGSKPTLNQDFIECNADDVERVFAVTAGQ-EHLYVYLHNEVK 509
Query 532 ALRLMPKYGTPML 544
A RLMP +GTP +
Sbjct 510 ATRLMPYFGTPTI 522
> Pichovirinae_Pavin_723_Microviridae_AG0327_putative.VP1
Length=508
Score = 471 bits (1211), Expect = 3e-162, Method: Compositional matrix adjust.
Identities = 243/546 (45%), Positives = 338/546 (62%), Gaps = 53/546 (10%)
Query 1 MKRPRRNAFNLSYESKLTLNMGELVPIMCMPVVPGDKFRVKTESLVRLAPLVAPMMHRVN 60
+ +P++N F+L+++ KL+ NMG+L PI+ + VPGDKF + ESL+R AP++AP+MHR++
Sbjct 11 LNKPKKNVFDLTHDVKLSTNMGQLTPILTLECVPGDKFDLSCESLIRFAPMIAPVMHRMD 70
Query 61 VFTHYFFVPNRLVWNEWEDFITKGVDGEDMPMFPKIQINQDSHLVSSASLIKEYFGDSSL 120
V HYFFVPNR++W+ WE FIT+ P ++ + +++ F
Sbjct 71 VTMHYFFVPNRILWSNWEKFITEHNSEHVAPYM--------AYTNGDYTAMQKKF----- 117
Query 121 WDYLGLPTLSACGNKSYDVVNGVKVPSGFQVSALPFRAYQLIYNEYYRDQNLTEPIDFTL 180
DY+G+P + A G + VSALP AYQ IYNEYYRDQNL P+D+ L
Sbjct 118 MDYIGIPPVPAGGVST-------------NVSALPMAAYQCIYNEYYRDQNLQTPVDYKL 164
Query 181 --GSGTTVGGDQLMALMSLRRRAWEKDYFTSALPWLQRGPEVTVPVQGAGGSMDVVYERQ 238
G+ T GD+ L +LR+RAWE DYFT++LP+ Q+G V +P+ G++D
Sbjct 165 TDGNNNTDAGDR-ERLTTLRQRAWEHDYFTASLPFAQKGAAVDIPI----GTID------ 213
Query 239 SDSQKWVDSSGREFENGRAYDITMTRANDPNSALMVAVNGGTNNRAPELDPNGTLKVN-V 297
K V + E G T R N + + + GG+N + P K + +
Sbjct 214 ----KDVAVNFNSLEFGA----TTVRYNSADGLIDI---GGSNAVNADGTPTMIAKTSTI 262
Query 298 DEMGININDLRTSNALQRWFERNARGGSRYIEQILSHFGVRSSDARLQRPQFLGGGRMPI 357
D INDLR + LQ W E+NARGG+RYIE IL+HFGVRSSD RLQRP+++ G + P+
Sbjct 263 DIEPTTINDLRRAFKLQEWLEKNARGGTRYIENILTHFGVRSSDKRLQRPEYITGVKSPV 322
Query 358 SVSEVLQTSSTDETSPQANMAGHGISAGINNGFKHYFEEHGYIIGIMSITPRSGYQQGVP 417
VSEVL T+ D PQ NMAGHGIS +Y EEHGYIIGIMS+ P++ YQQG+P
Sbjct 323 VVSEVLNTTGQDGGLPQGNMAGHGISVTSGKSGSYYCEEHGYIIGIMSVMPKTAYQQGIP 382
Query 418 RDFTKFDNMDFYFPEFAHLSEQEIKNQELFVSEDAAYNNGTFGYTPRYAEYKYHPSEAHG 477
R F K D++D+++P FA++ EQE+ QEL+ A N TFGY PRYAEYKY PS G
Sbjct 383 RTFLKTDSLDYFWPTFANIGEQEVAKQELYAYTANA--NDTFGYVPRYAEYKYMPSRVAG 440
Query 478 DFRSNLSFWHLNRIFEDKPNLNTTFVECRPSNRVFATSETEDDKFWVQMYQDVKALRLMP 537
+FR++L++WHL RIF +P+LN+ F+EC P+ R+FA + E D + + +KA+R MP
Sbjct 441 EFRTSLNYWHLGRIFATEPSLNSDFIECDPTKRIFAVEDPETDVLYCHVLNKIKAVRPMP 500
Query 538 KYGTPM 543
KYGTPM
Sbjct 501 KYGTPM 506
> Pichovirinae_Bourget_523_Microviridae_AG0333_putative.VP1
Length=518
Score = 431 bits (1107), Expect = 1e-146, Method: Compositional matrix adjust.
Identities = 241/553 (44%), Positives = 324/553 (59%), Gaps = 71/553 (13%)
Query 7 NAFNLSYESKLTLNMGELVPIMCMPVVPGDKFRVKTESLVRLAPLVAPMMHRVNVFTHYF 66
N F+LS++ K++ MG L P M VPGDK ++ TE+++R APL+AP+MH+VNV THYF
Sbjct 18 NVFDLSHDVKMSFKMGGLYPTCVMECVPGDKVKIGTETMLRFAPLIAPVMHKVNVTTHYF 77
Query 67 FVPNRLVWNEWEDFITKGVDGED--MPMFPKIQINQDSHLVSSASLIKEYFGDSSLWDYL 124
FVPNR++W WE +IT +D + +FP S F SL DYL
Sbjct 78 FVPNRILWPNWEQWITGNLDVQAPWFRLFP--------------SPASGGFHVKSLADYL 123
Query 125 GLPTLSACGNKSYDVVNGVKVPS-GFQV-SALPFRAYQLIYNEYYRDQNLTEPIDFTLGS 182
G PTL N + P G QV S P AY IYNEYYRDQNL P+ +L
Sbjct 124 GYPTLLTP--------NAIPYPEPGAQVGSPFPVAAYNKIYNEYYRDQNLQSPVLDSLTD 175
Query 183 GTTVGGDQLMALMSLRRRAWEKDYFTSALPWLQRGPEVTVPV--------QGAGGSMDVV 234
G L A +++RAW+ DYFTS LPW Q+G VT+P+ AGG++
Sbjct 176 GENDPFRNLAA-GPVKKRAWQHDYFTSCLPWAQKGDAVTIPIGDVTINYNAAAGGTV--- 231
Query 235 YERQSDSQKWVDSSGREFENG----RAYDITMTRANDPNSALMVAVNGGTNNRAPELDPN 290
RQ D +++ + + + RA +T TR N NS+ + GT A
Sbjct 232 -MRQVDGTPYINQTDLNYSDAGGQPRAGGVTGTRYNIDNSSQL----SGTAEAA------ 280
Query 291 GTLKVNVDEMGININDLRTSNALQRWFERNARGGSRYIEQILSHFGVRSSDARLQRPQFL 350
+IN LR + LQ W ERNARGG+RYIE IL+HFGV+SSDARLQRP++L
Sbjct 281 ------------DINSLRRAFRLQEWLERNARGGTRYIESILAHFGVKSSDARLQRPEYL 328
Query 351 GGGRMPISVSEVLQTSSTDETSPQANMAGHGISAGINNGFKHYFEEHGYIIGIMSITPRS 410
GG + + +SEVL T+ T T P NMAGHGIS N FK+ EEHG+IIGI+S+TP +
Sbjct 329 GGSKGKMVISEVLSTAET--TLPVGNMAGHGISVSGGNEFKYNVEEHGWIIGIISVTPET 386
Query 411 GYQQGVPRDFTKFDNMDFYFPEFAHLSEQEIKNQELFVSEDAAYNNG-TFGYTPRYAEYK 469
YQQG+ R +K D +D+++P FA++ EQE+ +E++ + N G TFGY PRYAEYK
Sbjct 387 AYQQGIHRSLSKLDRLDYFWPTFANIGEQEVLGKEIYAN---GINIGETFGYVPRYAEYK 443
Query 470 YHPSEAHGDFRSNLSFWHLNRIFEDKPNLNTTFVECRPSNRVFATSETEDDKFWVQMYQD 529
+ S G+ R++L +WHL R F PNLN F+EC PS R+FA + E D + ++ +
Sbjct 444 FLNSRVAGEMRTSLDYWHLGRKFSAAPNLNGAFIECDPSTRIFAVEDAEVDNIYGHIFNN 503
Query 530 VKALRLMPKYGTP 542
+KA+R MPKYGTP
Sbjct 504 IKAIRKMPKYGTP 516
> Pichovirinae_JCVI_003_Microviridae_AG0344_putative.VP1
Length=505
Score = 419 bits (1078), Expect = 2e-142, Method: Compositional matrix adjust.
Identities = 229/546 (42%), Positives = 328/546 (60%), Gaps = 54/546 (10%)
Query 1 MKRPRRNAFNLSYESKLTLNMGELVPIMCMPVVPGDKFRVKTESLVRLAPLVAPMMHRVN 60
+K+ R N F+L+++ K++ MGEL+PIM + +PGD + +S+V+ APL+AP+MHR N
Sbjct 12 VKKERYNTFDLTHDVKMSGRMGELLPIMNLECIPGDNITLGADSMVKFAPLLAPVMHRFN 71
Query 61 VFTHYFFVPNRLVWNEWEDFITKGVDGEDMPMFPKIQINQDSHLVSSASLIKEYFGDSSL 120
V HYFFVPNR++W+ WEDF+T D + P FP I++N S + ++ F D
Sbjct 72 VTMHYFFVPNRIIWDGWEDFMT---DVDTPPAFPIIEVN------SGWTAAQQRFAD--- 119
Query 121 WDYLGLPTLSACGNKSYDVVNGVKVPSGFQVSALPFRAYQLIYNEYYRDQNLTEPIDFTL 180
YLG+P N VP+ VSALPF AYQ +YNE+YRDQNL + + L
Sbjct 120 --YLGIPP------------NTAGVPT--NVSALPFAAYQCVYNEWYRDQNLVAEVPYQL 163
Query 181 GSGTTVGGDQLMALMSLRRRAWEKDYFTSALPWLQRGPEVTVPVQGAGGSMDVVYERQSD 240
+G + L +R RA+E DYFTSALP+ Q+G V +P+ G + + +
Sbjct 164 INGP----NPRTNLAVMRLRAFEHDYFTSALPFAQKGNAVDIPL----GDITL------N 209
Query 241 SQKWVDSSGREFENGRAYDITMTRANDPNSALMVAVNGGTNNRAPELDPNGTLKVNVDEM 300
S ++D S + EN ++ +D + +N G++N DP+G+L+V
Sbjct 210 SDWYLDGSVPKLENSTGGYVSGNVTSDNATG---EINVGSDNDPFAYDPDGSLEVT---- 262
Query 301 GININDLRTSNALQRWFERNARGGSRYIEQILSHFGVRSSDARLQRPQFLGGGRMPISVS 360
I DLR + LQ W E ARGGSRYIEQI + F V+SSD RLQRP+++ G + P+ +S
Sbjct 263 STTITDLRRAFKLQEWLELLARGGSRYIEQIKTFFDVKSSDQRLQRPEYITGTKQPVIIS 322
Query 361 EVLQTSSTDETSPQANMAGHGISAGINNGFKHYFEEHGYIIGIMSITPRSGYQQGVPRDF 420
E+L T+ PQ NM+GHG++ G N K+Y EEHG+IIGI+S+TP + YQQG+P+ +
Sbjct 323 EILNTTGETAGLPQGNMSGHGVAVGTGNVGKYYCEEHGFIIGILSVTPNTAYQQGIPKHY 382
Query 421 TKFDNMDFYFPEFAHLSEQEIKNQELFVSEDAAYNNGTFGYTPRYAEYKYHPSEAHGDFR 480
+ D DFY+P+FAH+ EQ I N E++ + + TFGYTPRYAEYKY PS G+FR
Sbjct 383 LRTDKYDFYWPQFAHIGEQPIVNNEIYAYDPTG--DETFGYTPRYAEYKYMPSRVAGEFR 440
Query 481 SNLSFWHLNRIFEDKPNLNTTFVECRPS--NRVFATSETEDDKFWVQMYQDVKALRLMPK 538
S+L WH RIF P L+ F+E +R+FA ++ DD ++ + VKA R MP
Sbjct 441 SSLDEWHAARIFSSLPTLSQDFIEVDADDFDRIFAVTDG-DDNLYMHVLNKVKARRQMPV 499
Query 539 YGTPML 544
+G PML
Sbjct 500 FGNPML 505
> Pichovirinae_66_Microbialites_001_Microviridae_AG0132_putative.VP1
Length=518
Score = 395 bits (1016), Expect = 6e-133, Method: Compositional matrix adjust.
Identities = 217/545 (40%), Positives = 309/545 (57%), Gaps = 41/545 (8%)
Query 1 MKRPRRNAFNLSYESKLTLNMGELVPIMCMPVVPGDKFRVKTESLVRLAPLVAPMMHRVN 60
M + N F+LS++ K + MG+LVP + +PGD F ++ ++++R PL+AP+MHRV
Sbjct 14 MSKVDSNNFDLSHDVKSSFKMGQLVPTNVIECMPGDLFTIRPQNMLRFLPLIAPVMHRVE 73
Query 61 VFTHYFFVPNRLVWNEWEDFITKGVDGEDMPMFPKIQINQDSHLVSSASLIKEYFGDSSL 120
V THYFFVPNRL+W +WE +IT D E P F + I + +L
Sbjct 74 VTTHYFFVPNRLLWADWEKWITGESDVE-APYF---------------NFIDQGIEVGTL 117
Query 121 WDYLGLPTLSACGNKSYDVVNGVKVPSGFQVSALPFRAYQLIYNEYYRDQNLTEPIDFTL 180
D+LG P S V S + S +P AYQ I++EYYRDQNL + L
Sbjct 118 GDHLGYPLSS--------------VSSDVKASPMPLAAYQKIWDEYYRDQNLQDERFTPL 163
Query 181 GSGTTVGGDQLMALMSLRRRAWEKDYFTSALPWLQRGPEVTVPVQGAGGSMDVVYERQSD 240
G QL RRAW DYFTS LP+ Q+G V +P+ A + + +
Sbjct 164 VPGDN--NSQLALNQQCYRRAWMHDYFTSCLPFAQKGDSVQLPISSAENQIVQLDPTATA 221
Query 241 SQKWVDSSGREFENGRAYDITMTRANDPNSALMVAVNGGTNNRAPELDPNGTLKVNVDEM 300
+V + G+ A + N P + V+ N + +P G+L V+V
Sbjct 222 PGTFVLADGQ----ASATPGNVHIINGPPPYVQTVVDDDDNPL--QFEPRGSLVVDVQAD 275
Query 301 GININDLRTSNALQRWFERNARGGSRYIEQILSHFGVRSSDARLQRPQFLGGGRMPISVS 360
++IN +R + LQ W E+NAR G+RYIE ILSHFGVRSSDARLQRP++LGG + + +S
Sbjct 276 AVDINTVRRAFRLQEWLEKNARAGTRYIESILSHFGVRSSDARLQRPEYLGGTKGNMVIS 335
Query 361 EVLQTS-STDETSPQANMAGHGISAGINNGFKHYFEEHGYIIGIMSITPRSGYQQGVPRD 419
EVL T+ +TD MAGHGI+A N K+ EEHG+IIGI+++ P + YQQG+PR+
Sbjct 336 EVLATAETTDANVAVGTMAGHGITAHGGNTIKYRCEEHGWIIGIINVQPVTAYQQGLPRE 395
Query 420 FTKFDNMDFYFPEFAHLSEQEIKNQELFVSEDAAYNNGTFGYTPRYAEYKYHPSEAHGDF 479
F++FD +D+ +P FA++ EQE+ N+EL+ + A + FGY PRYAE K+ S G+
Sbjct 396 FSRFDRLDYPWPVFANIGEQEVYNKELYANSPAP--DEIFGYIPRYAEMKFKNSRVAGEM 453
Query 480 RSNLSFWHLNRIFEDKPNLNTTFVECRPSNRVFATSETEDDKFWVQMYQDVKALRLMPKY 539
R L FWHL RIF + P LN F+EC P R+FA ++ +D +Y +V R +P+Y
Sbjct 454 RDTLDFWHLGRIFNNTPALNEEFIECNPDTRIFAVTDPAEDHIVAHIYNEVTVNRKLPRY 513
Query 540 GTPML 544
G P +
Sbjct 514 GIPTI 518
> Pichovirinae_Pavin_279_Microviridae_AG0271_putative.VP1
Length=503
Score = 382 bits (980), Expect = 9e-128, Method: Compositional matrix adjust.
Identities = 215/549 (39%), Positives = 309/549 (56%), Gaps = 60/549 (11%)
Query 1 MKRPRRNAFNLSYESKLTLNMGELVPIMCMPVVPGDKFRVKTESLVRLAPLVAPMMHRVN 60
+ RP N F+L+++ K+T MG L+P VPGDK+ + ++ +R AP+ AP+MH ++
Sbjct 10 VTRPPSNTFDLTHDVKMTGGMGNLMPCCIAECVPGDKWNISGDTYLRFAPITAPIMHSID 69
Query 61 VFTHYFFVPNRLVWNEWEDFITKGVDGEDMPMFPKIQINQDSHLVSSASLIKEYFGDSSL 120
V HYFFVPNR++W+ WE FI G +P F + D+++ ++A L
Sbjct 70 VAIHYFFVPNRILWSNWEKFIVNEPTG-GIPTF-----SWDANIPATA---------KKL 114
Query 121 WDYLGLPTLSACGNKSYDVVNGVKVPSGFQVSALPFRAYQLIYNEYYRDQNLTEPIDFTL 180
DYL +P + Q++ALPF AYQ IYNEYYRD+NL +++ L
Sbjct 115 GDYLSVPPPPTGATQ-------------VQINALPFAAYQAIYNEYYRDENLVTAVNYNL 161
Query 181 GSGTTVGGDQLMALMSLRRRAWEKDYFTSALPWLQRGPEVTVPVQGAGGSMDVVYERQ-- 238
G G +LR+RA+E DYFT+ LP+ Q+G V +P+ DV +
Sbjct 162 ADGNQGIG----TFGTLRKRAYEHDYFTACLPFAQKGAAVDLPLG------DVTLKANWN 211
Query 239 -SDSQKWVDSSGREFENGRAYDITMTRANDPNSALMVAVNGGTNNRAPELDPNGTLKVNV 297
S K+V+++G N + + PN + +GG + A +PNG+L+V
Sbjct 212 PSAIPKFVNAAGTSINN-----LDDVQGGTPNR---IRTSGGQSPIA--YNPNGSLEVG- 260
Query 298 DEMGININDLRTSNALQRWFERNARGGSRYIEQILSHFGVRSSDARLQRPQFLGGGRMPI 357
INDLR + LQ + E+NARGG+RYIE I HFGV+SSD+RLQRP+++ G + P+
Sbjct 261 ---STTINDLRRAMRLQEFLEKNARGGTRYIENIKMHFGVQSSDSRLQRPEYITGTKAPV 317
Query 358 SVSEVLQTSSTDETSPQANMAGHGISAGINNGFKHYFEEHGYIIGIMSITPRSGYQQGVP 417
V E+ T E PQ N G S + + EEHGYIIGIMSI P+ YQQG+P
Sbjct 318 VVQEITSTVKGIE-EPQGNPTGKATSLQSGHYGNYSVEEHGYIIGIMSIMPKPAYQQGIP 376
Query 418 RDFTKFDNMDFYFPEFAHLSEQEIKNQELFVSEDAAYNNGTFGYTPRYAEYKYHPSEAHG 477
+ + K D +DFY+P FA++ EQE+ +E++ N FGY PRYAEYKY + G
Sbjct 377 KSYLKTDVLDFYWPSFANIGEQEVLQEEIYGYTPTP--NAVFGYIPRYAEYKYLQNRVCG 434
Query 478 DFRSNLSFWHLNRIFEDKPNLNTTFVECRPSN--RVFATSETEDDKFWVQMYQDVKALRL 535
FR+ L FWHL RIF + P L+ +F+E P+N R+FA E DD ++ + + A R
Sbjct 435 LFRTTLDFWHLGRIFANIPTLSQSFIEVSPANQTRIFANQEDYDDNIYIHVLNKMTARRP 494
Query 536 MPKYGTPML 544
MP +GTPML
Sbjct 495 MPVFGTPML 503
> Gokush_gi|9629155|ref|NP_044312.1|_VP1_[Chlamydia_phage_1]
Length=596
Score = 336 bits (862), Expect = 5e-109, Method: Compositional matrix adjust.
Identities = 213/593 (36%), Positives = 300/593 (51%), Gaps = 76/593 (13%)
Query 5 RRNAFNLSYESKLTLNMGELVPIMCMPVVPGDKFRVKTESLVRLAPLVAPMMHRVNVFTH 64
RR++F+ S+ K T +M LVP V+PGD F + L RL LV P+M + + T
Sbjct 24 RRSSFDRSHGYKTTFDMDYLVPFFVDEVLPGDTFSLSETHLCRLTTLVQPIMDNIQLTTQ 83
Query 65 YFFVPNRLVWNEWEDFITKGVDGEDMPMFPKIQINQDSHLVSSASLIKEYFGDSSLWDYL 124
+FFVPNRL+W+ WE FIT G D P+ + + V + + ++S++DY
Sbjct 84 FFFVPNRLLWDNWESFITGG----DEPVAWTSTNPANEYFVPQVTSPDGGYAENSIYDYF 139
Query 125 GLPTLSACGNKSYDVVNGVKVPSGFQVSALPFRAYQLIYNEYYRDQNLTEPIDFTLGSGT 184
GLPT A ++ LP RAY LI+NEYYRD+NL E + G
Sbjct 140 GLPTKVA----------------NYRHQVLPLRAYNLIFNEYYRDENLQESLPVWTGDAD 183
Query 185 -----TVG-----GDQLMALMSLRRRAWEKDYFTSALPWLQRGPEVTVPVQGA------- 227
T G D + + L RR DYFTSALP LQ+GP V + + G
Sbjct 184 PKVDPTTGEESQEDDAVPYVYKLMRRNKRYDYFTSALPGLQKGPSVGIGITGGDSGRLPV 243
Query 228 -GGSMDVVYERQSD------------SQKWVDSSGREFENGRAYDITMTRANDPNSALM- 273
G ++ + SD SQKW + GR +G T N P ++
Sbjct 244 HGLAIRSYLDDSSDDQFSFGVSYVNASQKWFTADGR-LTSGMGSVPVGTTGNFPIDNVVY 302
Query 274 -------VAVNGGTNNRAPELDPNGTLKVNVD---EMGININDLRTSNALQRWFERNARG 323
VA G ++ + G V VD + IN LR + LQ+WFE++AR
Sbjct 303 PSYFGTTVAQTGSPSSSSTPPFVKGDFPVYVDLAASSSVTINSLRNAITLQQWFEKSARY 362
Query 324 GSRYIEQILSHFGVRSSDARLQRPQFLGGGRMPISVSEVLQTSSTDETSPQANMAGHGIS 383
GSRY+E + HFGV D R QRP +LGG + +SV+ V+Q SSTD SPQ N++ + +S
Sbjct 363 GSRYVESVQGHFGVHLGDYRAQRPIYLGGSKSYVSVNPVVQNSSTDSVSPQGNLSAYALS 422
Query 384 AGINNGFKHYFEEHGYIIGIMSITPRSGYQQGVPRDFTKFDNMDFYFPEFAHLSEQEIKN 443
+ F F EHG++IG++S T YQQG+ R +++F D+Y+P FAHL EQ + N
Sbjct 423 TDTKHLFTKSFVEHGFVIGLLSATADLTYQQGLERQWSRFSRYDYYWPTFAHLGEQPVYN 482
Query 444 QELFVSED-------AAYNNGTFGYTPRYAEYKYHPSEAHGDFRSN----LSFWHLNRIF 492
+E++ D +A N+ FGY RYAEY+Y PS+ G FRSN L WHL++ F
Sbjct 483 KEIYCQSDTVMDPSGSAVNDVPFGYQERYAEYRYKPSKVTGLFRSNATGTLDSWHLSQNF 542
Query 493 EDKPNLNTTFVECR-PSNRVFATSETEDDKFWVQMYQDVKALRLMPKYGTPML 544
+ P LN TF++ P +R A + D F Y + + +R MP Y P L
Sbjct 543 ANLPTLNETFIQSNTPIDRALAVPDQPD--FICDFYFNYRCIRPMPVYSVPGL 593
> Gokush_Bourget_309_Microviridae_AG0288_putative.VP1
Length=536
Score = 333 bits (855), Expect = 9e-109, Method: Compositional matrix adjust.
Identities = 208/554 (38%), Positives = 295/554 (53%), Gaps = 58/554 (10%)
Query 6 RNAFNLSYESKLTLNMGELVPIMCMPVVPGDKFRVKTESLVRLAPLVAPMMHRVNVFTHY 65
R+ F++ K T + G +VPIMC V+PGD F V RLA + P+M +++ + +
Sbjct 22 RSRFSMQKTLKTTFDSGYIVPIMCEEVLPGDTFNVNLTMFGRLATPIFPVMDNLHLDSFF 81
Query 66 FFVPNRLVWNEWEDFITKGVDGEDMPMFPKIQINQDSHLVSSASLIKEYFGDSSLWDYLG 125
FFVPNRLVWN W F+ + +D P + S+ + + SL DYLG
Sbjct 82 FFVPNRLVWNNWVKFMGE----QDNPS------DSISYTIPQQVSPAGGYAIGSLQDYLG 131
Query 126 LPTLSACGNKSYDVVNGVKVPSGFQVSALPFRAYQLIYNEYYRDQNLTEPIDFTLGSGTT 185
LPT V V + SALP RAY LIYN+++RD+NL + G G
Sbjct 132 LPT-----------VGQVTAGNTVSHSALPTRAYNLIYNQWFRDENLQNSVVVDKGDGPD 180
Query 186 VGGDQLMALMSLRRRAWEKDYFTSALPWLQRGPEVTVPVQGAGGSMDVVYERQSDSQKWV 245
++ RR DYFTS+LPW Q+G VT+P+ G D+ Y+ D KW
Sbjct 181 ASPSTNYTIL---RRGKRHDYFTSSLPWPQKGTAVTLPL---GTRADIKYDTGFDG-KWR 233
Query 246 DSSGREFENGRAYDITMTRANDPNSALMVAVNG-GTNNRAPEL----DPNGTLKVNVD-E 299
++S T A P+S ++ GT AP DPNG+L ++
Sbjct 234 NTS--------------TGALQPSSGTQAILSASGTTQVAPGTPSFYDPNGSLYADLSTA 279
Query 300 MGININDLRTSNALQRWFERNARGGSRYIEQILSHFGVRSSDARLQRPQFLGGGRMPISV 359
IN LR S +Q+ ER+ARGG+RY E I SHFGV S DARLQRP++LGGG PIS+
Sbjct 280 TAATINQLRQSFQIQKLLERDARGGTRYTEIIRSHFGVTSPDARLQRPEYLGGGSTPISI 339
Query 360 SEVLQTSSTD---ETSPQANMAGHGISAGINNGFKHYFEEHGYIIGIMSITPRSGYQQGV 416
S + QT+ T +T+PQ N+A G + N+GF F EHGY+IG++S+ YQQG+
Sbjct 340 SPIAQTTGTGISGQTTPQGNLAAMGTYSAHNHGFTQSFVEHGYVIGVVSVRADLTYQQGL 399
Query 417 PRDFTKFDNMDFYFPEFAHLSEQEIKNQELFVSEDAAYNNGTFGYTPRYAEYKYHPSEAH 476
R +++ D+YFP FA L EQ I N+E++V+ ++ NN FGY R+AEY+Y+PSE
Sbjct 400 RRHWSRSTRYDYYFPAFAMLGEQAILNKEIYVTGGSSDNN-VFGYQERWAEYRYNPSEIT 458
Query 477 GDFRS----NLSFWHLNRIFEDKPNLNTTFVECRP--SNRVFATSETEDDKFWVQMYQDV 530
G FRS + WH + F P LN+TF++ P + + S +F + + ++
Sbjct 459 GLFRSTAAGTIDPWHYAQKFTSLPTLNSTFIQDNPPLARNLAVGSGANGQQFLLDAFFNI 518
Query 531 KALRLMPKYGTPML 544
A R +P Y P L
Sbjct 519 NAARPLPMYSVPGL 532
> Gokush_Human_feces_C_031_Microviridae_AG0433_putative.VP1
Length=529
Score = 324 bits (830), Expect = 4e-105, Method: Compositional matrix adjust.
Identities = 203/548 (37%), Positives = 288/548 (53%), Gaps = 53/548 (10%)
Query 6 RNAFNLSYESKLTLNMGELVPIMCMPVVPGDKFRVKTESLVRLAPLVAPMMHRVNVFTHY 65
R+ F+ S+ K T N G LVP V+PGD F++ RLA + P M + + T +
Sbjct 22 RSVFDRSHGYKTTFNSGYLVPFYVDEVLPGDSFKLTATLFARLATPIVPFMDNLYLETFF 81
Query 66 FFVPNRLVWNEWEDFITKGVDGEDMPMFPKIQINQDSHLVSSASLIKEYFGDSSLWDYLG 125
FFVPNRLVW+ W+ F +GE K + L+ + S + +LWDY G
Sbjct 82 FFVPNRLVWDNWQKF-----NGEQ-----KNPTDSTDFLIPTVSGTN--VQNQTLWDYFG 129
Query 126 LPTLSACGNKSYDVVNGVKVPSGFQVSALPFRAYQLIYNEYYRDQNLTEPIDFTLGSGTT 185
LPT V +V+ALPFRAY LI+NE++RD+NL E + G G
Sbjct 130 LPT---------------NVSEALKVNALPFRAYNLIFNEWFRDENLQESLKVPTGDGPD 174
Query 186 VGGDQLMALMSLRRRAWEKDYFTSALPWLQRGPEVTVPVQGAGGSMDVVYERQSDSQKWV 245
D SL RR DYFTS LPW Q+GP V + + GGS +V + +
Sbjct 175 NLSD-----YSLVRRGKRHDYFTSCLPWPQKGPGVEISI---GGSANVSFSGNGTPTFDI 226
Query 246 DSSGREFENGRAYDITMTRANDPNSALMVAVNGGTNNRAPELDPNGTLKVNVDEMG---- 301
SS G + A D N+++ V GGT N + V ++
Sbjct 227 SSSNVSLPAGGLF-----VAGDTNTSVGV-YRGGTANTGRLFSWKDSGLVATADLSTATP 280
Query 302 ININDLRTSNALQRWFERNARGGSRYIEQILSHFGVRSSDARLQRPQFLGGGRMPISVSE 361
I+INDLR + +Q+ +ER+ARGG+RY E + SHFGV S DARLQRP++LGG IS++
Sbjct 281 ISINDLRQAFQIQKLYERDARGGTRYTEILRSHFGVISPDARLQRPEYLGGSSARISINP 340
Query 362 VLQTSSTDETSPQANMAGHGISAGINNGFKHYFEEHGYIIGIMSITPRSGYQQGVPRDFT 421
V QTS+T++T+PQ N+A G+ + +GF F EHGY+ G +++ YQQG+ R ++
Sbjct 341 VQQTSATNDTTPQGNLAAFGVVSDSFHGFSKSFVEHGYVFGFVNVRADLTYQQGLNRMWS 400
Query 422 KFDNMDFYFPEFAHLSEQEIKNQELFVSEDAAYNNGTFGYTPRYAEYKYHPSEAHGDFRS 481
+ DFY+P AHL EQ + N+E++ ++ A ++ FGY RYAEY+Y+P + G FRS
Sbjct 401 RQGRFDFYWPVLAHLGEQAVLNKEIY-AQGTADDDKVFGYQERYAEYRYYPGQITGKFRS 459
Query 482 N----LSFWHLNRIFEDKPNLNTTFVECRPS-NRVFATSETEDDKFWVQMYQDVKALRLM 536
L WHL + F P L+ F++ P RV A + +F Y +K R M
Sbjct 460 TDPQPLDSWHLAQKFSSLPTLSPQFIQDNPPVERVIAVQ--NEPQFLFDSYIRLKCARPM 517
Query 537 PKYGTPML 544
P Y P L
Sbjct 518 PVYSVPGL 525
> Gokush_JCVI_001_Microviridae_AG025_putative.VP1
Length=560
Score = 324 bits (830), Expect = 9e-105, Method: Compositional matrix adjust.
Identities = 204/554 (37%), Positives = 293/554 (53%), Gaps = 47/554 (8%)
Query 6 RNAFNLSYESKLTLNMGELVPIMCMPVVPGDKFRVKTESLVRLAPLVAPMMHRVNVFTHY 65
R++F + K T + G L+PI C V+PGD F VK + RLA + P+M + + + +
Sbjct 35 RSSFQIQTAHKTTFDSGYLIPIYCDEVLPGDTFNVKMTAFARLATPLFPVMDNMYLDSFF 94
Query 66 FFVPNRLVWNEWEDFITKGVDGEDMPMFPKIQINQDSHLVSSASLIKEYFGDSSLWDYLG 125
FFVPNRLVW+ W+ F+ + VD D S+++ + + S+ DYL
Sbjct 95 FFVPNRLVWDNWQKFMGEQVDPGD----------SISYVIPQTVTPEGGYAIGSIQDYLA 144
Query 126 LPTLSACGNKSYDVVNGVKVPSGFQVSALPFRAYQLIYNEYYRDQNLTEPIDFTLGSGTT 185
LPT+ V G V SALP RA LIYNE++RD+NL + G
Sbjct 145 LPTVG-------QVTAGQTVSH----SALPLRALNLIYNEWFRDENLQNSLTVNRDDGPD 193
Query 186 VGGDQLMALMSLRRRAWEKDYFTSALPWLQRGPEVTVPVQGAGGSMDVVYERQSDSQKWV 245
+ D SL RR DYFTSALPW Q+G VT+P+ G+ VY S S
Sbjct 194 LYTD-----YSLFRRGKRHDYFTSALPWPQKGAAVTLPL----GTSAPVYGTGS-SLSLY 243
Query 246 DSSGREFENGRAYDITMTRANDPNSALMVAVNGGTN---NRAPELDPNGTLKVNVD---E 299
D + + ++T R+ N GGT ++A + +G + D
Sbjct 244 DGTNLFGMYSQNTNLTTGRSAVYNQPAGTVAVGGTVQGVDKALGVATSGDTGIYADLSAA 303
Query 300 MGININDLRTSNALQRWFERNARGGSRYIEQILSHFGVRSSDARLQRPQFLGGGRMPISV 359
IN LR S +QR ER+ARGG+RY E I SHFGV S DARLQRP++LGGG P+++
Sbjct 304 TAATINQLRESFQIQRLLERDARGGTRYTEIIRSHFGVISPDARLQRPEYLGGGSTPVNI 363
Query 360 SEVLQTSSTDE---TSPQANMAGHGISAGINNGFKHYFEEHGYIIGIMSITPRSGYQQGV 416
S + QTS+T +P N+A G + + +GF F EHG++IG++++ YQQG+
Sbjct 364 SPIAQTSATASGATATPLGNLAAMGTALAMGHGFTQSFVEHGHVIGLVAVRADLTYQQGM 423
Query 417 PRDFTKFDNMDFYFPEFAHLSEQEIKNQELFVSEDAAYNNGTFGYTPRYAEYKYHPSEAH 476
+ +++ DFYFP FAHL EQ + N+E++ + + ++ FGY R+AEY+YHPS+
Sbjct 424 RKMWSRRTRYDFYFPVFAHLGEQAVLNKEIYTTGTST-DDDVFGYQERWAEYRYHPSQIT 482
Query 477 GDFRS----NLSFWHLNRIFEDKPNLNTTFVECRPS-NRVFAT-SETEDDKFWVQMYQDV 530
FRS L WHL + F P LNT+F++ P +RV A +E +F + D+
Sbjct 483 SLFRSTAAGTLDAWHLAQNFSSLPTLNTSFIQDNPPVDRVVAIGAEANGQQFIFDSFFDI 542
Query 531 KALRLMPKYGTPML 544
KA R MP Y P L
Sbjct 543 KAARPMPLYSVPGL 556
Lambda K H a alpha
0.319 0.135 0.412 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 49674486