bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-35_CDS_annotation_glimmer3.pl_2_3

Length=105
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Pichovirinae_Pavin_723_Microviridae_AG0326_hypothetical.protein...  21.9    1.4  
  Alpavirinae_Human_feces_C_043_Microviridae_AG0322_putative.VP1      21.6    2.4
  Alpavirinae_Human_gut_22_017_Microviridae_AG0393_putative.VP4       20.0    7.4
  Gokush_Bourget_245_Microviridae_AG081_putative.VP2                  20.0    7.8
  Microvirus_gi|89888103|ref|YP_512796.1|_gpF_[Enterobacteria_pha...  19.6    9.3


> Pichovirinae_Pavin_723_Microviridae_AG0326_hypothetical.protein.BACEGG.02723
Length=266

 Score = 21.9 bits (45),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 9/39 (23%), Positives = 22/39 (56%), Gaps = 0/39 (0%)

Query  62   DDSQVVDPSSEFGLDRFEKSEEVASQISTRMKKKHDEKL  100
            ++  V+D +     +RF++S     Q+ + M+  +++KL
Sbjct  141  ENQNVIDQTPYIAEERFQRSRLTGKQVDSIMEDINNKKL  179


> Alpavirinae_Human_feces_C_043_Microviridae_AG0322_putative.VP1
Length=602

 Score = 21.6 bits (44),  Expect = 2.4, Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 0/18 (0%)

Query  57   SNYDEDDSQVVDPSSEFG  74
            +NY++D    V PSS+FG
Sbjct  255  ANYNKDLFMGVMPSSQFG  272


> Alpavirinae_Human_gut_22_017_Microviridae_AG0393_putative.VP4
Length=562

 Score = 20.0 bits (40),  Expect = 7.4, Method: Compositional matrix adjust.
 Identities = 7/19 (37%), Positives = 11/19 (58%), Gaps = 0/19 (0%)

Query  40   RSFRNGGLGLGARPLGDSN  58
            R  R+G   +G  P G+S+
Sbjct  351  RVIRSGCADIGCDPFGESS  369


> Gokush_Bourget_245_Microviridae_AG081_putative.VP2
Length=242

 Score = 20.0 bits (40),  Expect = 7.8, Method: Compositional matrix adjust.
 Identities = 7/11 (64%), Positives = 9/11 (82%), Gaps = 0/11 (0%)

Query  32   VKPLSDQIRSF  42
            VKP+ D +RSF
Sbjct  229  VKPIIDLLRSF  239


> Microvirus_gi|89888103|ref|YP_512796.1|_gpF_[Enterobacteria_phage_ID18_sensu_lato]
Length=426

 Score = 19.6 bits (39),  Expect = 9.3, Method: Composition-based stats.
 Identities = 13/49 (27%), Positives = 24/49 (49%), Gaps = 3/49 (6%)

Query  55   GDSNYDEDDSQVVDPSSEF---GLDRFEKSEEVASQISTRMKKKHDEKL  100
            G ++YD D+  ++   SEF   G D     +    Q S R+++  + K+
Sbjct  225  GHTSYDGDNRPLLLMRSEFWASGYDVDGTDQTSLGQFSGRVQQTFNHKV  273



Lambda      K        H        a         alpha
   0.312    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5503968