bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-41_CDS_annotation_glimmer3.pl_2_1
Length=85
Score E
Sequences producing significant alignments: (Bits) Value
Gokush_Human_feces_D_045_Microviridae_AG0400_putative.VP3 67.0 2e-17
Gokush_Human_feces_A_029_Microviridae_AG0224_putative.VP3 41.2 1e-07
Gokush_Human_feces_D_014_Microviridae_AG028_putative.VP3 40.8 1e-07
Gokush_Human_gut_32_030_Microviridae_AG0187_putative.VP3 34.7 3e-05
Gokush_Human_gut_31_045_Microviridae_AG0116_putative.VP3 34.7 3e-05
Gokush_Human_gut_27_035_Microviridae_AG0165_putative.VP3 34.7 3e-05
Gokush_Human_feces_E_017_Microviridae_AG0129_hypothetical.protein 34.3 4e-05
Gokush_Human_feces_A_020_Microviridae_AG0264_hypothetical.protein 33.9 5e-05
Gokush_Human_feces_A_019_Microviridae_AG0440_hypothetical.protein 33.1 1e-04
Gokush_JCVI_001_Microviridae_AG023_putative.VP3 32.0 2e-04
> Gokush_Human_feces_D_045_Microviridae_AG0400_putative.VP3
Length=109
Score = 67.0 bits (162), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 33/77 (43%), Positives = 52/77 (68%), Gaps = 4/77 (5%)
Query 1 MYGDFTGLPSDPIEALNLVHQSEYAFAQLSADDKAKYNNDWRRWFADLLSGRDNLSEKLS 60
+YGDF+ LP +P++ +N+++ +E +F+QL AD+KA +NND+R W A+LL+ N +S
Sbjct 33 IYGDFSALPQNPVDMINVLNSAEQSFSQLPADEKAAFNNDYRVWLANLLNSASNPDVDIS 92
Query 61 SVVPNSDV--EKEGADS 75
VP+ EK G DS
Sbjct 93 --VPDKPAVEEKGGVDS 107
> Gokush_Human_feces_A_029_Microviridae_AG0224_putative.VP3
Length=162
Score = 41.2 bits (95), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (61%), Gaps = 0/46 (0%)
Query 1 MYGDFTGLPSDPIEALNLVHQSEYAFAQLSADDKAKYNNDWRRWFA 46
YGD T PS +ALN+V SE F L +++AKYN+++ + A
Sbjct 80 FYGDITSYPSTFADALNIVRSSEEFFNSLPVEERAKYNHNFSEFLA 125
> Gokush_Human_feces_D_014_Microviridae_AG028_putative.VP3
Length=174
Score = 40.8 bits (94), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (57%), Gaps = 0/51 (0%)
Query 1 MYGDFTGLPSDPIEALNLVHQSEYAFAQLSADDKAKYNNDWRRWFADLLSG 51
+Y D + +P++ IEA + + FA L D K K+ ND + A++LSG
Sbjct 100 IYADISDMPTNIIEAQKRIQDVQAKFASLPIDIKEKFGNDPTVFMAEILSG 150
> Gokush_Human_gut_32_030_Microviridae_AG0187_putative.VP3
Length=157
Score = 34.7 bits (78), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query 1 MYGDFTGLPSDPIEALNLVHQSEYAFAQLSADDKAKYNNDWRRWFADLLSGRDNLSEKL 59
YGDF P EALN +++ E F L + + K+ N + + A SG + +KL
Sbjct 79 FYGDFLDFPKTYAEALNHMNEMERQFMALPVETREKFGNSFTEFLA--ASGEADFFDKL 135
Score = 19.2 bits (38), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 7/19 (37%), Positives = 12/19 (63%), Gaps = 0/19 (0%)
Query 50 SGRDNLSEKLSSVVPNSDV 68
SGR+NL + + S + D+
Sbjct 40 SGRENLYDYIQSYAESCDI 58
> Gokush_Human_gut_31_045_Microviridae_AG0116_putative.VP3
Length=157
Score = 34.7 bits (78), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query 1 MYGDFTGLPSDPIEALNLVHQSEYAFAQLSADDKAKYNNDWRRWFADLLSGRDNLSEKL 59
YGDF P EALN +++ E F L + + K+ N + + A SG + +KL
Sbjct 79 FYGDFLDFPKTYAEALNHMNEMERQFMALPVETREKFGNSFTEFLA--ASGEADFFDKL 135
Score = 19.2 bits (38), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 7/19 (37%), Positives = 12/19 (63%), Gaps = 0/19 (0%)
Query 50 SGRDNLSEKLSSVVPNSDV 68
SGR+NL + + S + D+
Sbjct 40 SGRENLYDYIQSYAESCDI 58
> Gokush_Human_gut_27_035_Microviridae_AG0165_putative.VP3
Length=157
Score = 34.7 bits (78), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query 1 MYGDFTGLPSDPIEALNLVHQSEYAFAQLSADDKAKYNNDWRRWFADLLSGRDNLSEKL 59
YGDF P EALN +++ E F L + + K+ N + + A SG + +KL
Sbjct 79 FYGDFLDFPKTYAEALNHMNEMERQFMALPVETREKFGNSFTEFLA--ASGEADFFDKL 135
Score = 19.2 bits (38), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 7/19 (37%), Positives = 12/19 (63%), Gaps = 0/19 (0%)
Query 50 SGRDNLSEKLSSVVPNSDV 68
SGR+NL + + S + D+
Sbjct 40 SGRENLYDYIQSYAESCDI 58
> Gokush_Human_feces_E_017_Microviridae_AG0129_hypothetical.protein
Length=161
Score = 34.3 bits (77), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (63%), Gaps = 0/43 (0%)
Query 4 DFTGLPSDPIEALNLVHQSEYAFAQLSADDKAKYNNDWRRWFA 46
DFT +PS EA N++ Q+E + +L + K K++ND ++ A
Sbjct 87 DFTNMPSTLAEAQNMMIQAENTWNKLPREIKQKFDNDVEKFIA 129
> Gokush_Human_feces_A_020_Microviridae_AG0264_hypothetical.protein
Length=157
Score = 33.9 bits (76), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/43 (40%), Positives = 27/43 (63%), Gaps = 0/43 (0%)
Query 4 DFTGLPSDPIEALNLVHQSEYAFAQLSADDKAKYNNDWRRWFA 46
DFT +PS EA NL+ Q+E + +L + K K++ND ++ A
Sbjct 87 DFTNMPSTLAEAQNLMIQAEQTWDKLPREVKQKFDNDVDKFIA 129
> Gokush_Human_feces_A_019_Microviridae_AG0440_hypothetical.protein
Length=162
Score = 33.1 bits (74), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (63%), Gaps = 0/43 (0%)
Query 4 DFTGLPSDPIEALNLVHQSEYAFAQLSADDKAKYNNDWRRWFA 46
DFT +PS EA N++ Q+E + +L + K K++ND ++ A
Sbjct 87 DFTNMPSTLAEAQNMMIQAENTWNKLPREIKQKFDNDVDKFIA 129
> Gokush_JCVI_001_Microviridae_AG023_putative.VP3
Length=142
Score = 32.0 bits (71), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query 1 MYGDFTGLPSDPIEALNLVHQSEYAFAQLSADDKAKYNNDWRRWFADLLSGRDNLSEKLS 60
M DF G+ +D A+N + + + AF L+AD + K+ ND R F D NL E ++
Sbjct 59 MAEDFVGI-TDYHTAMNAIRRGDEAFNTLNADVREKFKNDAGR-FVDFCLDPANLDEVIA 116
Lambda K H a alpha
0.309 0.129 0.372 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3608121