bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-45_CDS_annotation_glimmer3.pl_2_1
Length=45
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_C_043_Microviridae_AG0321_putative.VP4 21.2 0.44
Gokush_Human_gut_33_018_Microviridae_AG0172_putative.VP2 19.6 1.8
Gokush_SectLung2LLL_002_Microviridae_AG0239_putative.VP4 19.2 2.2
Alpavirinae_Human_feces_B_020_Microviridae_AG0356_hypothetical.... 18.5 4.4
Alpavirinae_Human_feces_C_010_Microviridae_AG0201_hypothetical.... 18.1 4.4
Alpavirinae_Human_feces_A_034_Microviridae_AG0102_putative.VP4 18.5 4.5
Alpavirinae_Human_gut_21_005_Microviridae_AG017_hypothetical.pr... 18.1 5.6
Alpavirinae_Human_gut_22_017_Microviridae_AG0396_hypothetical.p... 17.7 7.8
> Alpavirinae_Human_feces_C_043_Microviridae_AG0321_putative.VP4
Length=546
Score = 21.2 bits (43), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 9/17 (53%), Positives = 12/17 (71%), Gaps = 0/17 (0%)
Query 25 KANMDYTENIKHRAVVD 41
KA+ DY EN K +A +D
Sbjct 124 KADKDYIENFKKQANLD 140
> Gokush_Human_gut_33_018_Microviridae_AG0172_putative.VP2
Length=242
Score = 19.6 bits (39), Expect = 1.8, Method: Composition-based stats.
Identities = 8/27 (30%), Positives = 15/27 (56%), Gaps = 0/27 (0%)
Query 19 FQYQVQKANMDYTENIKHRAVVDSYKN 45
+Q Q+Q A+ Y + +H+ V +N
Sbjct 58 YQAQLQNASWKYQMSNRHQLEVGDLRN 84
> Gokush_SectLung2LLL_002_Microviridae_AG0239_putative.VP4
Length=294
Score = 19.2 bits (38), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 7/19 (37%), Positives = 11/19 (58%), Gaps = 0/19 (0%)
Query 22 QVQKANMDYTENIKHRAVV 40
+++ N D+TEN R V
Sbjct 260 KIRMENFDHTENTPERLAV 278
> Alpavirinae_Human_feces_B_020_Microviridae_AG0356_hypothetical.protein
Length=55
Score = 18.5 bits (36), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 0/22 (0%)
Query 23 VQKANMDYTENIKHRAVVDSYK 44
V KA M E + AVV+S+K
Sbjct 16 VAKALMQEVEGEEIVAVVESWK 37
> Alpavirinae_Human_feces_C_010_Microviridae_AG0201_hypothetical.protein
Length=54
Score = 18.1 bits (35), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/21 (43%), Positives = 12/21 (57%), Gaps = 0/21 (0%)
Query 10 FNILKTRSIFQYQVQKANMDY 30
FN T F+ Q+Q AN+ Y
Sbjct 25 FNRPSTAERFRKQLQDANIGY 45
> Alpavirinae_Human_feces_A_034_Microviridae_AG0102_putative.VP4
Length=539
Score = 18.5 bits (36), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 17/33 (52%), Gaps = 0/33 (0%)
Query 7 TYDFNILKTRSIFQYQVQKANMDYTENIKHRAV 39
T+DF+ + S Q +KA++ YT R +
Sbjct 113 TFDFDTQLSWSSAQLLQKKAHLHYTSFPDGRCI 145
> Alpavirinae_Human_gut_21_005_Microviridae_AG017_hypothetical.protein
Length=54
Score = 18.1 bits (35), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/21 (43%), Positives = 12/21 (57%), Gaps = 0/21 (0%)
Query 10 FNILKTRSIFQYQVQKANMDY 30
FN T F+ Q+Q AN+ Y
Sbjct 25 FNRPSTAERFRKQLQDANIGY 45
> Alpavirinae_Human_gut_22_017_Microviridae_AG0396_hypothetical.protein.BACPLE
Length=386
Score = 17.7 bits (34), Expect = 7.8, Method: Composition-based stats.
Identities = 8/26 (31%), Positives = 13/26 (50%), Gaps = 0/26 (0%)
Query 1 MSPFTGTYDFNILKTRSIFQYQVQKA 26
M PF Y +IFQY++ ++
Sbjct 113 MQPFQADYSGIGSSIGNIFQYELMQS 138
Lambda K H a alpha
0.320 0.131 0.375 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3701457