bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-50_CDS_annotation_glimmer3.pl_2_1
Length=242
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_A_032_Microviridae_AG0217_putative.VP1 23.5 2.0
Alpavirinae_Human_feces_C_010_Microviridae_AG0198_putative.VP4 21.9 6.7
Microvirus_gi|9625365|ref|NP_039599.1|_minor_spike_protein_[Ent... 21.6 7.2
Alpavirinae_Human_gut_21_005_Microviridae_AG013_putative.VP4 21.6 8.0
> Alpavirinae_Human_feces_A_032_Microviridae_AG0217_putative.VP1
Length=657
Score = 23.5 bits (49), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/39 (31%), Positives = 21/39 (54%), Gaps = 0/39 (0%)
Query 161 RNSNVKTSIRFIGLVIFNRNFNRGGRTLLNNITKQIGGI 199
R+S+ K FI V+F+ NFN ++ ++GG+
Sbjct 331 RDSDEKLKSLFIFDVLFSPNFNEHEESIPPIANTEMGGL 369
> Alpavirinae_Human_feces_C_010_Microviridae_AG0198_putative.VP4
Length=451
Score = 21.9 bits (45), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
Query 100 SHSTNVRRIYRSLPNTKKIGLINI 123
+++ +R Y P+T + +INI
Sbjct 251 AYAEQLRAFYEQQPDTCDMSVINI 274
> Microvirus_gi|9625365|ref|NP_039599.1|_minor_spike_protein_[Enterobacteria_phage_alpha3]
Length=330
Score = 21.6 bits (44), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (52%), Gaps = 0/31 (0%)
Query 126 RRFSTPKSAKNIANTTTGNKKTIHPILKFCL 156
+R S + A +ANT K+ H I++ L
Sbjct 213 QRESQARVASILANTDLTTKQATHEIMRMAL 243
> Alpavirinae_Human_gut_21_005_Microviridae_AG013_putative.VP4
Length=451
Score = 21.6 bits (44), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
Query 100 SHSTNVRRIYRSLPNTKKIGLINI 123
+++ +R Y P+T + +INI
Sbjct 251 AYAEQLRAFYEQQPDTCDMSVINI 274
Lambda K H a alpha
0.322 0.134 0.385 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 19270416