bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters



Query= Contig-53_CDS_annotation_glimmer3.pl_2_1

Length=159
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Microvirus_gi|89888654|ref|YP_512417.1|_gpG_[Enterobacteria_pha...  23.5    0.84
  Pichovirinae_Bourget_523_Microviridae_AG0334_hypothetical.protein   21.2    3.1


> Microvirus_gi|89888654|ref|YP_512417.1|_gpG_[Enterobacteria_phage_WA13_sensu_lato]
Length=181

 Score = 23.5 bits (49),  Expect = 0.84, Method: Compositional matrix adjust.
 Identities = 15/41 (37%), Positives = 20/41 (49%), Gaps = 0/41 (0%)

Query  8   RFSASIVIVPSSSGFNAVIFEIPFSPSIQSVFTQLLKMSLS  48
           R ++SI    + SGF  V    P SP  Q VF+    +S S
Sbjct  44  RIASSIASASNGSGFAFVQMMDPNSPDSQQVFSVAASLSFS  84


> Pichovirinae_Bourget_523_Microviridae_AG0334_hypothetical.protein
Length=89

 Score = 21.2 bits (43),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 15/29 (52%), Gaps = 0/29 (0%)

Query  96   LSRVSSFCSFKIVFSEFLYNVSSPGNCPT  124
            LSR+ S CS   +    + N++S   C T
Sbjct  42   LSRLDSVCSLLQITLIHINNLNSKNQCAT  70



Lambda      K        H        a         alpha
   0.328    0.139    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 10843727