bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-5_CDS_annotation_glimmer3.pl_2_1
Length=65
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_gut_21_005_Microviridae_AG016_putative.VP1 75.9 3e-19
Alpavirinae_Human_feces_C_010_Microviridae_AG0199_putative.VP1 74.3 1e-18
Alpavirinae_Human_feces_B_007_Microviridae_AG068_putative.VP1 74.3 1e-18
Pichovirinae_Pavin_279_Microviridae_AG0271_putative.VP1 36.6 8e-06
Pichovirinae_JCVI_003_Microviridae_AG0344_putative.VP1 32.3 2e-04
Pichovirinae_Bourget_523_Microviridae_AG0333_putative.VP1 30.4 7e-04
Pichovirinae_59_Coral_002_Microviridae_AG0339_putative.VP1 30.0 0.001
Alpavirinae_Human_feces_B_020_Microviridae_AG0351_putative.VP1 29.6 0.001
Gokush_Human_feces_E_009_Microviridae_AG0285_putative.VP1 26.9 0.010
Gokush_Bourget_248_Microviridae_AG0251_putative.VP1 25.8 0.023
> Alpavirinae_Human_gut_21_005_Microviridae_AG016_putative.VP1
Length=742
Score = 75.9 bits (185), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/65 (57%), Positives = 45/65 (69%), Gaps = 6/65 (9%)
Query 1 MHRVFNQKPQLAQSFLVIDPAQVTDVFAVTKADDGTELADKIYGQIWFDCTAKLPISRVA 60
MHR F+ PQL Q FL++DP V VF+VT E DKI+G + F+ TA+LPISRVA
Sbjct 684 MHRTFSGLPQLGQQFLLVDPDTVNQVFSVT------EYTDKIFGYVKFNATARLPISRVA 737
Query 61 IPRLD 65
IPRLD
Sbjct 738 IPRLD 742
> Alpavirinae_Human_feces_C_010_Microviridae_AG0199_putative.VP1
Length=731
Score = 74.3 bits (181), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/65 (57%), Positives = 45/65 (69%), Gaps = 6/65 (9%)
Query 1 MHRVFNQKPQLAQSFLVIDPAQVTDVFAVTKADDGTELADKIYGQIWFDCTAKLPISRVA 60
M RVF+ PQL Q FL++DP V VF+VT E DKI+G + F+ TA+LPISRVA
Sbjct 673 MSRVFSGLPQLGQQFLLVDPDTVNQVFSVT------EYTDKIFGYVKFNATARLPISRVA 726
Query 61 IPRLD 65
IPRLD
Sbjct 727 IPRLD 731
> Alpavirinae_Human_feces_B_007_Microviridae_AG068_putative.VP1
Length=780
Score = 74.3 bits (181), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/65 (54%), Positives = 45/65 (69%), Gaps = 6/65 (9%)
Query 1 MHRVFNQKPQLAQSFLVIDPAQVTDVFAVTKADDGTELADKIYGQIWFDCTAKLPISRVA 60
M R F P+L +SF V+ P V +VF+VT E++DKI GQI FDCTA+LPISRV
Sbjct 722 MFRSFENAPELGKSFTVMQPGSVNNVFSVT------EVSDKILGQIHFDCTAQLPISRVV 775
Query 61 IPRLD 65
+PRL+
Sbjct 776 VPRLE 780
> Pichovirinae_Pavin_279_Microviridae_AG0271_putative.VP1
Length=503
Score = 36.6 bits (83), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/62 (34%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query 3 RVFNQKPQLAQSFLVIDPAQVTDVFAVTKADDGTELADKIYGQIWFDCTAKLPISRVAIP 62
R+F P L+QSF+ + PA T +FA + D D IY + TA+ P+ P
Sbjct 447 RIFANIPTLSQSFIEVSPANQTRIFANQEDYD-----DNIYIHVLNKMTARRPMPVFGTP 501
Query 63 RL 64
L
Sbjct 502 ML 503
> Pichovirinae_JCVI_003_Microviridae_AG0344_putative.VP1
Length=505
Score = 32.3 bits (72), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/32 (41%), Positives = 19/32 (59%), Gaps = 0/32 (0%)
Query 3 RVFNQKPQLAQSFLVIDPAQVTDVFAVTKADD 34
R+F+ P L+Q F+ +D +FAVT DD
Sbjct 450 RIFSSLPTLSQDFIEVDADDFDRIFAVTDGDD 481
> Pichovirinae_Bourget_523_Microviridae_AG0333_putative.VP1
Length=518
Score = 30.4 bits (67), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/60 (32%), Positives = 29/60 (48%), Gaps = 7/60 (12%)
Query 3 RVFNQKPQLAQSFLVIDPAQVTDVFAVTKADDGTELADKIYGQIWFDCTAKLPISRVAIP 62
R F+ P L +F+ DP+ T +FAV A+ D IYG I+ + A + + P
Sbjct 464 RKFSAAPNLNGAFIECDPS--TRIFAVEDAE-----VDNIYGHIFNNIKAIRKMPKYGTP 516
> Pichovirinae_59_Coral_002_Microviridae_AG0339_putative.VP1
Length=522
Score = 30.0 bits (66), Expect = 0.001, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (53%), Gaps = 0/34 (0%)
Query 1 MHRVFNQKPQLAQSFLVIDPAQVTDVFAVTKADD 34
M R+F KP L Q F+ + V VFAVT +
Sbjct 465 MGRIFGSKPTLNQDFIECNADDVERVFAVTAGQE 498
> Alpavirinae_Human_feces_B_020_Microviridae_AG0351_putative.VP1
Length=651
Score = 29.6 bits (65), Expect = 0.001, Method: Composition-based stats.
Identities = 20/56 (36%), Positives = 27/56 (48%), Gaps = 5/56 (9%)
Query 9 PQLAQSFLVIDPAQVTDVFAVTKADDGTELADKIYGQIWFDCTAKLPISRVAIPRL 64
P++A IDP + +FA T D A + QI FD TA+ +S IP L
Sbjct 601 PRIADLTTYIDPIKYNYIFADTSID-----AMNFWVQIKFDITARRLMSAKQIPNL 651
> Gokush_Human_feces_E_009_Microviridae_AG0285_putative.VP1
Length=559
Score = 26.9 bits (58), Expect = 0.010, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query 5 FNQKPQLAQSFLVIDPAQVTDVFAVTKADDGTELADKIYGQIWFDCTAKLPISRVAIPRL 64
+ + P L+ ++V D V V AVT + A++++ ++ + P+ +IP L
Sbjct 501 YTKLPSLSSEWIVEDKTNVDRVLAVTSTN-----ANQLFADLYINNQTTRPMPMYSIPGL 555
> Gokush_Bourget_248_Microviridae_AG0251_putative.VP1
Length=546
Score = 25.8 bits (55), Expect = 0.023, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (47%), Gaps = 5/60 (8%)
Query 5 FNQKPQLAQSFLVIDPAQVTDVFAVTKADDGTELADKIYGQIWFDCTAKLPISRVAIPRL 64
F P L +F + D V+ V AV A +G + I+ +FDC P+ ++P L
Sbjct 488 FTTTPTLNNTF-IQDTPPVSRVVAVGAAANGQQF---IFDS-FFDCKKARPMPMYSVPGL 542
Lambda K H a alpha
0.325 0.138 0.419 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3675489