bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-5_CDS_annotation_glimmer3.pl_2_5
Length=57
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_C_016_Microviridae_AG0274_putative.VP1 23.1 0.19
Alpavirinae_CF7ML_001_Microviridae_AG0307_putative.VP4 18.5 8.5
> Alpavirinae_Human_feces_C_016_Microviridae_AG0274_putative.VP1
Length=641
Score = 23.1 bits (48), Expect = 0.19, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (48%), Gaps = 6/44 (14%)
Query 8 FYYADSDYRHFSVEAS------SFSDAEKTANAFALRVGAIIVG 45
F YA D R+ + + +FSDA T+N+F A I G
Sbjct 268 FLYALDDVRNITRTGTGCELFKTFSDALPTSNSFVAMACAGIQG 311
> Alpavirinae_CF7ML_001_Microviridae_AG0307_putative.VP4
Length=593
Score = 18.5 bits (36), Expect = 8.5, Method: Composition-based stats.
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
Query 14 DYRHFSVEASSFSDAEKTANAFAL 37
DYR+ + + S+ K AN+ L
Sbjct 566 DYRNRAYDNLKLSNKSKVANSAVL 589
Lambda K H a alpha
0.323 0.134 0.364 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3661448