bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-6_CDS_annotation_glimmer3.pl_2_5

Length=55
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Alpavirinae_Human_feces_A_048_Microviridae_AG088_hypothetical.p...  21.6    0.33 
  Gokush_gi|393707866|ref|YP_004732988.1|_DNA_replication_initiat...  20.8    1.0
  Pichovirinae_Bourget_523_Microviridae_AG0333_putative.VP1           19.2    3.5


> Alpavirinae_Human_feces_A_048_Microviridae_AG088_hypothetical.protein
Length=54

 Score = 21.6 bits (44),  Expect = 0.33, Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (55%), Gaps = 1/55 (2%)

Query  1   MKKGESTRVDMVNEDGEIEKIYLVERTDRRVIIKTVKDYkkeqienenkkqLSLW  55
           M  GE T    + ED  I K Y + R +RR+II+   D +K+ + +   +QL LW
Sbjct  1   MIPGECTNGFEIFEDTII-KEYNLNRKERRLIIEKTYDEQKDLLRHVLNQQLKLW  54


> Gokush_gi|393707866|ref|YP_004732988.1|_DNA_replication_initiation_protein_[Microviridae_phi-CA82]
Length=353

 Score = 20.8 bits (42),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 8/29 (28%), Positives = 17/29 (59%), Gaps = 0/29 (0%)

Query  10   DMVNEDGEIEKIYLVERTDRRVIIKTVKD  38
            D  N DG IE++ ++ + + R   + ++D
Sbjct  119  DFCNSDGVIERVPVLNKAEIRHFKEILRD  147


> Pichovirinae_Bourget_523_Microviridae_AG0333_putative.VP1
Length=518

 Score = 19.2 bits (38),  Expect = 3.5, Method: Composition-based stats.
 Identities = 9/17 (53%), Positives = 12/17 (71%), Gaps = 1/17 (6%)

Query  6    STRVDMVNEDGEIEKIY  22
            STR+  V ED E++ IY
Sbjct  482  STRIFAV-EDAEVDNIY  497



Lambda      K        H        a         alpha
   0.317    0.136    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3693648