bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-8_CDS_annotation_glimmer3.pl_2_2

Length=57
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Gokush_Pavin_110_Microviridae_AG051_putative.VP1                    19.2    4.6


> Gokush_Pavin_110_Microviridae_AG051_putative.VP1
Length=541

 Score = 19.2 bits (38),  Expect = 4.6, Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 3/20 (15%)

Query  5   IIFYHSAFG---YDNVRVDA  21
           ++F+H +FG   + N  VDA
Sbjct  1   MLFFHFSFGVFMFHNKSVDA  20



Lambda      K        H        a         alpha
   0.327    0.143    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3661448