bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-10_CDS_annotation_glimmer3.pl_2_1
Length=206
Score E
Sequences producing significant alignments: (Bits) Value
gi|547312922|ref|WP_022044634.1| putative replication initiation... 41.6 0.21
gi|563770316|ref|WP_023789189.1| ATP-dependent RNA helicase 38.5 2.9
gi|526005612|ref|WP_020836283.1| ATP-dependent RNA helicase 37.4 6.1
gi|568293148|gb|ETN80369.1| hypothetical protein NECAME_18023 37.0 8.3
>gi|547312922|ref|WP_022044634.1| putative replication initiation protein [Alistipes finegoldii
CAG:68]
gi|524208442|emb|CCZ76638.1| putative replication initiation protein [Alistipes finegoldii
CAG:68]
Length=320
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/64 (33%), Positives = 37/64 (58%), Gaps = 2/64 (3%)
Query 15 VLASAGIGAGYMDRLDYLWQKQNYKNINVATYTFRNGTKMAMPKYYKNKIFTEKEREKMW 74
V++S GIG+ Y++ + K N + NG + AMP+YY NKIF++ +++ M
Sbjct 194 VISSFGIGSNYLNTEESSLHKLG--NQRYQPFMVLNGFQQAMPRYYYNKIFSDVDKQNMV 251
Query 75 INNL 78
++ L
Sbjct 252 VDRL 255
>gi|563770316|ref|WP_023789189.1| ATP-dependent RNA helicase [Spiroplasma apis]
gi|563693572|ref|YP_008868555.1| ATP-dependent RNA helicase [Spiroplasma apis B31]
gi|562818216|gb|AHB36255.1| ATP-dependent RNA helicase [Spiroplasma apis B31]
Length=454
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/63 (32%), Positives = 34/63 (54%), Gaps = 3/63 (5%)
Query 24 GYMDRLDYLWQKQNYKNINVATY--TFRNGTKMAMPKYYKNKIFTEKEREKMWINNLNRG 81
G++D LD++ K N +N++++ + T NG K + KY IF E +K N+
Sbjct 161 GFIDELDFILSKMN-ENVSISLFSATISNGLKPFLSKYLSKAIFIESTEKKPSNKNIEHV 219
Query 82 LIW 84
L+W
Sbjct 220 LVW 222
>gi|526005612|ref|WP_020836283.1| ATP-dependent RNA helicase [Spiroplasma diminutum]
gi|525908431|ref|YP_008292445.1| ATP-dependent RNA helicase [Spiroplasma diminutum CUAS-1]
gi|525041806|gb|AGR42050.1| ATP-dependent RNA helicase [Spiroplasma diminutum CUAS-1]
Length=455
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (54%), Gaps = 3/63 (5%)
Query 24 GYMDRLDYLWQKQNYKNINVATY--TFRNGTKMAMPKYYKNKIFTEKEREKMWINNLNRG 81
G+++ +D++ K N K++NV+ + T NG K + KY N IF E + N+
Sbjct 162 GFIEEVDFMLSKIN-KDVNVSLFSATINNGLKPFLQKYLSNSIFIENKDSNPTNKNIEHV 220
Query 82 LIW 84
LIW
Sbjct 221 LIW 223
>gi|568293148|gb|ETN80369.1| hypothetical protein NECAME_18023 [Necator americanus]
Length=345
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/71 (30%), Positives = 39/71 (55%), Gaps = 6/71 (8%)
Query 5 DIKHPEFKQIVLASAGIGAGYMDRLDYLWQKQNYKNINVATYTFRNGTKMAMPKYYKNKI 64
D + PEF L S G+G Y+ + K++ I+ T G+++AMP+YY+ KI
Sbjct 166 DDRVPEFS---LMSKGMGVSYLTPQMVEYHKED---ISRLFCTREGGSRIAMPRYYRQKI 219
Query 65 FTEKEREKMWI 75
+++ + +K +
Sbjct 220 YSDDDLKKQVV 230
Lambda K H a alpha
0.319 0.134 0.416 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 692426810790