bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-24_CDS_annotation_glimmer3.pl_2_2
Length=307
Score E
Sequences producing significant alignments: (Bits) Value
gi|547312922|ref|WP_022044634.1| putative replication initiation... 47.0 0.008
gi|575094374|emb|CDL65755.1| unnamed protein product 41.2 0.73
gi|575094560|emb|CDL65924.1| unnamed protein product 38.9 3.4
gi|655264282|ref|WP_028674572.1| NADH dehydrogenase 38.5 7.4
gi|517620489|ref|WP_018790697.1| NADH dehydrogenase subunit G 38.5 7.4
gi|655986127|ref|WP_029027932.1| NADH dehydrogenase 38.1 7.4
gi|655978380|ref|WP_029020678.1| NADH dehydrogenase 38.1 7.4
gi|654735723|ref|WP_028192134.1| NADH dehydrogenase 38.1 7.4
gi|517636719|ref|WP_018806927.1| NADH dehydrogenase subunit G 38.1 7.4
gi|517623078|ref|WP_018793286.1| NADH dehydrogenase subunit G 38.1 7.4
>gi|547312922|ref|WP_022044634.1| putative replication initiation protein [Alistipes finegoldii
CAG:68]
gi|524208442|emb|CCZ76638.1| putative replication initiation protein [Alistipes finegoldii
CAG:68]
Length=320
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query 2 CNKPLRITNPHYIKLADQLGVEIPQFSN-------QSDYKLQVPCGKCVQCIKKRQQHWF 54
C +P I N Y A+ EI ++ DY L+VPCG C C K +
Sbjct 3 CEQPKVIVNRRY---ANMTNTEIVNYAKVYYGCFWPPDYILEVPCGYCHSCQKSYNNQYR 59
Query 55 VRAHNIYKRLGYNLSDSYFCTFTLKPEFYEAFCKEPYAFIRRFIDRMRK 103
+R +Y+ Y F T T + E F K+ +R F+DR RK
Sbjct 60 IRL--LYELRKYPPGTCLFVTLTFNDDSLEKFSKDTNKAVRLFLDRFRK 106
>gi|575094374|emb|CDL65755.1| unnamed protein product [uncultured bacterium]
Length=487
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/76 (37%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query 37 VPCGKCVQCIKKRQQHWFVRAHNIYKRLGYNLSDSYFCTFTLKPEFYEAFCKEP-----Y 91
VPCG C C + W VR + L N S SYF T TL P F + + P Y
Sbjct 26 VPCGHCYDCKSAKTTDWQVRCS---EELNNN-SQSYFYTLTLDPRFIDTYGTLPDGSPRY 81
Query 92 AFIRR----FIDRMRK 103
F +R F+ R+RK
Sbjct 82 VFNKRHIQLFLKRLRK 97
>gi|575094560|emb|CDL65924.1| unnamed protein product [uncultured bacterium]
Length=320
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 61/236 (26%), Positives = 91/236 (39%), Gaps = 33/236 (14%)
Query 34 KLQVPCGKCVQCIKKRQQHWFVRAHNIYKRLGYNLSDSYFCTFTLKPEFYEAFCKEPYAF 93
+ Q+PCG+C+ C R VRAH ++ L Y+ +YF T T PE F
Sbjct 42 EFQIPCGQCIGCRLDRSLDSAVRAH--HESLLYD--RNYFLTLTYSPEHLPPFGSLIPRD 97
Query 94 IRRFIDRMRKDPF-LRYR-----NPDTGRFCYRKISFPYLFVLEVADGKRAAQrrlhseh 147
+ F R+RK LRY GR Y I +F L + K+
Sbjct 98 LTLFWKRLRKRGVSLRYMACGEYGSTYGRPHYHAI----IFNLPPLELKQIGTTST---- 149
Query 148 rlhlhAIMFGCPLPWWRVRHYWMSFGLAWVNPLRHFGAVRYAMKYITKKSAVHWNDIPKE 207
G P V S G +NP+ F Y +Y+TKK + ++
Sbjct 150 ---------GFPTFISDVISECWSLGFHTLNPV-SFQTCAYVARYVTKKILGDGKQVYEK 199
Query 208 ILDLHGRLYVS-HGFGRLSESEKDALRAYMMTGCKQWFSV---LIDNHPYSIPRYY 259
+ G + F R S ++ Y M + ++ + LI+N + IPRYY
Sbjct 200 FDPVTGEVDCRVKEFSRWS-TKPGIGHDYFMKYWRDFYKIDCCLINNKKFKIPRYY 254
>gi|655264282|ref|WP_028674572.1| NADH dehydrogenase [Salinispora arenicola]
Length=839
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 6/44 (14%)
Query 6 LRITNPH---YIKLADQLGVEIPQFSNQSDYKLQVPCGKCVQCI 46
+ +T P I++A+QLGVEIP+F D+ L P G C QC+
Sbjct 18 IEVTAPKGALLIRVAEQLGVEIPRF---CDHPLLAPVGACRQCL 58
>gi|517620489|ref|WP_018790697.1| NADH dehydrogenase subunit G [Salinispora arenicola]
Length=839
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 6/44 (14%)
Query 6 LRITNPH---YIKLADQLGVEIPQFSNQSDYKLQVPCGKCVQCI 46
+ +T P I++A+QLGVEIP+F D+ L P G C QC+
Sbjct 18 IEVTAPKGALLIRVAEQLGVEIPRF---CDHPLLAPVGACRQCL 58
>gi|655986127|ref|WP_029027932.1| NADH dehydrogenase [Salinispora arenicola]
Length=839
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 6/44 (14%)
Query 6 LRITNPH---YIKLADQLGVEIPQFSNQSDYKLQVPCGKCVQCI 46
+ +T P I++A+QLGVEIP+F D+ L P G C QC+
Sbjct 18 IEVTAPKGALLIRVAEQLGVEIPRF---CDHPLLAPVGACRQCL 58
>gi|655978380|ref|WP_029020678.1| NADH dehydrogenase [Salinispora arenicola]
Length=839
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 6/44 (14%)
Query 6 LRITNPH---YIKLADQLGVEIPQFSNQSDYKLQVPCGKCVQCI 46
+ +T P I++A+QLGVEIP+F D+ L P G C QC+
Sbjct 18 IEVTAPKGALLIRVAEQLGVEIPRF---CDHPLLAPVGACRQCL 58
>gi|654735723|ref|WP_028192134.1| NADH dehydrogenase [Salinispora arenicola]
Length=839
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 6/44 (14%)
Query 6 LRITNPH---YIKLADQLGVEIPQFSNQSDYKLQVPCGKCVQCI 46
+ +T P I++A+QLGVEIP+F D+ L P G C QC+
Sbjct 18 IEVTAPKGALLIRVAEQLGVEIPRF---CDHPLLAPVGACRQCL 58
>gi|517636719|ref|WP_018806927.1| NADH dehydrogenase subunit G [Salinispora arenicola]
Length=839
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 6/44 (14%)
Query 6 LRITNPH---YIKLADQLGVEIPQFSNQSDYKLQVPCGKCVQCI 46
+ +T P I++A+QLGVEIP+F D+ L P G C QC+
Sbjct 18 IEVTAPKGALLIRVAEQLGVEIPRF---CDHPLLAPVGACRQCL 58
>gi|517623078|ref|WP_018793286.1| NADH dehydrogenase subunit G [Salinispora arenicola]
Length=839
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 6/44 (14%)
Query 6 LRITNPH---YIKLADQLGVEIPQFSNQSDYKLQVPCGKCVQCI 46
+ +T P I++A+QLGVEIP+F D+ L P G C QC+
Sbjct 18 IEVTAPKGALLIRVAEQLGVEIPRF---CDHPLLAPVGACRQCL 58
Lambda K H a alpha
0.328 0.142 0.482 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1657384462080