bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-25_CDS_annotation_glimmer3.pl_2_2
Length=314
Score E
Sequences producing significant alignments: (Bits) Value
gi|530695361|gb|AGT39916.1| replication initiator 159 1e-42
gi|9791179|ref|NP_063900.1| conserved hypothetical protein 157 2e-41
gi|47566147|ref|YP_022485.1| nonstructural protein 153 5e-40
gi|77020121|ref|YP_338244.1| putative replication protein 152 8e-40
gi|17402855|ref|NP_510879.1| hypothetical protein PhiCPG1p9 149 4e-39
gi|9634955|ref|NP_054653.1| nonstructural protein 150 1e-38
gi|575096096|emb|CDL66976.1| unnamed protein product 149 1e-38
gi|313766930|gb|ADR80656.1| putative replication initiation protein 150 2e-38
gi|530695350|gb|AGT39906.1| replication initiator 141 2e-35
gi|313766924|gb|ADR80651.1| putative replication initiation protein 138 1e-34
>gi|530695361|gb|AGT39916.1| replication initiator [Marine gokushovirus]
Length=289
Score = 159 bits (402), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/254 (38%), Positives = 137/254 (54%), Gaps = 28/254 (11%)
Query 59 FFVPCGKCIECRISHSIEWAYRVVAETRAHEHNCMITLTYADEYLP---HDMSVSMYEMQ 115
F +PCG+CI CR+ +S +WA R V E + HE NC ITLT+ +E++ + S+ E Q
Sbjct 28 FNLPCGQCIGCRLDYSRQWAIRCVHEAQTHEDNCFITLTFDNEHIAKRKNPESLDNTEFQ 87
Query 116 TFLKRLRKEVQPSAIRFFGCGEYGEQFLRPHYHMVVFGHDFSDRYLFGHDKKGTKLYRSP 175
F+KRLRK+ P IRFF CGEYG+Q RPHYH ++FGHDF D+ L+ +K KL+ S
Sbjct 88 RFMKRLRKKY-PHKIRFFHCGEYGDQNKRPHYHALLFGHDFKDKKLWS-NKGDFKLFVSQ 145
Query 176 QLEKVWPKGFSSVCEVEFDVAKYVAIYLQK----PPADGRHR---------------AFV 216
+L ++WP GF ++ V FD A Y A Y+ K A +R +
Sbjct 146 ELAELWPYGFHTIGAVSFDTAAYCARYVMKKVTGDAAASHYREVDLETGEVINEIKPEYC 205
Query 217 NMSRNPGIGYQAIKP----NLMETDKLYQDGKYIHLPRYYLKVLERSYPDQIADLKERRI 272
MSR PGIGY+ + + + D + +G + PRYY K+ + QI + +
Sbjct 206 TMSRMPGIGYEWYQKYGYHDCHKHDYIVINGYKVRPPRYYDKLCDEEMFAQIKETRVANA 265
Query 273 NHAISEYVEMMANL 286
+ I Y E M L
Sbjct 266 DEPIINYGEEMDRL 279
>gi|9791179|ref|NP_063900.1| conserved hypothetical protein [Chlamydia pneumoniae phage CPAR39]
gi|7190960|gb|AAF39720.1| conserved hypothetical protein [Chlamydia pneumoniae phage CPAR39]
Length=327
Score = 157 bits (396), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 143/257 (56%), Gaps = 18/257 (7%)
Query 51 PVKLAKYQFFVPCGKCIECRISHSIEWAYRVVAETRAHEHNCMITLTYADEYLPHDMSVS 110
P + K +PC KC CR+ ++ W+YR + E + NC +TLTY D YLP + S+
Sbjct 55 PEEYRKRWVVMPCLKCRFCRVRNAKIWSYRCMHEASLYSQNCFLTLTYEDRYLPENGSLV 114
Query 111 MYEMQTFLKRLRKEVQPSAIRFFGCGEYGEQFLRPHYHMVVFGHDFSDRYLFGHDKKGTK 170
+ FL RLRKE+ P IR+FGCGEYG + RPHYH++++ +DF D+ L K+G
Sbjct 115 RNHPRLFLMRLRKEIYPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSK-KRGNP 173
Query 171 LYRSPQLEKVWPKGFSSVCEVEFDVAKYVAIY-LQKPPAD-------GRHRAFVNMSRNP 222
L+ S +L ++WP GFS+V V A YVA Y L+K D R F+ S P
Sbjct 174 LFVSEKLMRLWPFGFSTVGSVTRQSAGYVARYSLKKVNGDISQDHYGQRLPEFLMCSLKP 233
Query 223 GIG---YQAIKPNLMETDKL-YQD-GKYIHL--PRYYLKVLERSYPDQIADLKERRINH- 274
GIG Y+ K ++ D L QD GK PRYY K+ R P+++ ++K++R+
Sbjct 234 GIGADWYEKYKRDVYPQDYLVVQDKGKSFKTRPPRYYDKLHSRFDPEEMEEIKQKRVEKF 293
Query 275 -AISEYVEMMANLKHHI 290
A+ E + A +K +I
Sbjct 294 MALPELTQDKAEVKQYI 310
>gi|47566147|ref|YP_022485.1| nonstructural protein [Chlamydia phage 3]
gi|47522482|emb|CAD79483.1| nonstructural protein [Chlamydia phage 3]
Length=315
Score = 153 bits (386), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 139/246 (57%), Gaps = 18/246 (7%)
Query 62 PCGKCIECRISHSIEWAYRVVAETRAHEHNCMITLTYADEYLPHDMSVSMYEMQTFLKRL 121
PC KC CR+ ++ W+YR + E + NC +TLTY D +LP + S+ + FL+RL
Sbjct 54 PCLKCRFCRVQNAKIWSYRCMHEASLYSQNCFLTLTYEDRHLPENGSLVRDHPRLFLRRL 113
Query 122 RKEVQPSAIRFFGCGEYGEQFLRPHYHMVVFGHDFSDRYLFGHDKKGTKLYRSPQLEKVW 181
R+ + P IR+FGCGEYG + RPHYH++++ +DF D+ L K+G L+ S +L ++W
Sbjct 114 REHIYPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSK-KRGNPLFVSEKLMQLW 172
Query 182 PKGFSSVCEVEFDVAKYVAIY-LQKPPADG-------RHRAFVNMSRNPGIG---YQAIK 230
P GFS+V V A YVA Y L+K D R F+ S PGIG Y+ K
Sbjct 173 PFGFSTVGSVTRQSAGYVARYSLKKVNGDSSQDHYGQRLPEFLMCSLKPGIGADWYEKYK 232
Query 231 PNLMETDKL-YQD-GKYIHL--PRYYLKVLERSYPDQIADLKERRINH--AISEYVEMMA 284
++ D L QD GK PRYY K+ R P+++ ++K+RR+ A+ E + A
Sbjct 233 RDVYPQDYLVVQDKGKSFKTRPPRYYDKLHSRFDPEEMEEIKQRRVEKFMALPELTQDKA 292
Query 285 NLKHHI 290
+K +I
Sbjct 293 EVKQYI 298
>gi|77020121|ref|YP_338244.1| putative replication protein [Chlamydia phage 4]
gi|59940020|gb|AAX12549.1| putative replication protein [Chlamydia phage 4]
Length=315
Score = 152 bits (385), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 94/257 (37%), Positives = 143/257 (56%), Gaps = 18/257 (7%)
Query 51 PVKLAKYQFFVPCGKCIECRISHSIEWAYRVVAETRAHEHNCMITLTYADEYLPHDMSVS 110
P + K +PC +C CR+ ++ W+YR + E + NC +TLTY D++LP + S+
Sbjct 43 PEEYRKRWILMPCRRCKFCRVQNAKIWSYRCMHEASLYSQNCFLTLTYEDQHLPENGSLV 102
Query 111 MYEMQTFLKRLRKEVQPSAIRFFGCGEYGEQFLRPHYHMVVFGHDFSDRYLFGHDKKGTK 170
FL+RLR+ + P IR+FGCGEYG + RPHYH++++ +DF D+ L K+G
Sbjct 103 RNHPTLFLRRLREHISPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSK-KRGNP 161
Query 171 LYRSPQLEKVWPKGFSSVCEVEFDVAKYVAIY-LQKPPAD-------GRHRAFVNMSRNP 222
L+ S +L ++WP GFS+V V A YVA Y L+K D R F+ S P
Sbjct 162 LFVSEKLMQLWPYGFSTVGSVTRQSAGYVARYSLKKVSRDISQDHYGQRLPEFLMCSLKP 221
Query 223 GIG---YQAIKPNLMETDKL-YQD-GKYIHL--PRYYLKVLERSYPDQIADLKERRINH- 274
GIG Y+ K ++ D L QD GK PRYY K+ R P+++ ++K++R+
Sbjct 222 GIGADWYEKYKRDVYPQDYLVVQDKGKSFTTRPPRYYDKLHSRFDPEEMDEVKQKRVEKV 281
Query 275 -AISEYVEMMANLKHHI 290
A+ E + A +K +I
Sbjct 282 MALPELSQDKAEVKQYI 298
>gi|17402855|ref|NP_510879.1| hypothetical protein PhiCPG1p9 [Guinea pig Chlamydia phage]
Length=263
Score = 149 bits (376), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/247 (38%), Positives = 138/247 (56%), Gaps = 18/247 (7%)
Query 61 VPCGKCIECRISHSIEWAYRVVAETRAHEHNCMITLTYADEYLPHDMSVSMYEMQTFLKR 120
+P KC CR+ ++ W+YR + E + NC +TLTY D +LP + S+ FL R
Sbjct 1 MPWRKCKFCRVQNAKIWSYRCIHEASLYSQNCFLTLTYEDRHLPENGSLVRDHPALFLMR 60
Query 121 LRKEVQPSAIRFFGCGEYGEQFLRPHYHMVVFGHDFSDRYLFGHDKKGTKLYRSPQLEKV 180
LRKE+ P IR+FGCGEYG + RPHYH++++ +DF D+ L K+G L+ S +L ++
Sbjct 61 LRKEIYPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSK-KRGNPLFVSEKLMRL 119
Query 181 WPKGFSSVCEVEFDVAKYVAIY-LQKPPAD-------GRHRAFVNMSRNPGIG---YQAI 229
WP GFS+V V A YVA Y L+K D R F+ S PGIG Y+
Sbjct 120 WPFGFSTVGSVMRQSAGYVARYSLKKVNGDISQDHYGQRLPQFLMCSLKPGIGADWYEKY 179
Query 230 KPNLMETDKL-YQD-GKYIHL--PRYYLKVLERSYPDQIADLKERRINH--AISEYVEMM 283
K ++ D L QD GK PRYY K+ R P+++ ++K++RI A+ + +
Sbjct 180 KRDVYPQDYLVVQDKGKSFTTRPPRYYDKLHSRFDPEEMDEVKQKRIEKVMALPQLTQDK 239
Query 284 ANLKHHI 290
A +K +I
Sbjct 240 AEVKQYI 246
>gi|9634955|ref|NP_054653.1| nonstructural protein [Chlamydia phage 2]
gi|7406595|emb|CAB85595.1| nonstructural protein [Chlamydia phage 2]
Length=336
Score = 150 bits (378), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/248 (38%), Positives = 139/248 (56%), Gaps = 18/248 (7%)
Query 60 FVPCGKCIECRISHSIEWAYRVVAETRAHEHNCMITLTYADEYLPHDMSVSMYEMQTFLK 119
+PC +C CR+ ++ W+YR + E + NC +TLTY D +LP + S+ + FL
Sbjct 73 LMPCRRCKFCRVQNAKIWSYRCMHEASLYSQNCFLTLTYEDRHLPENGSLVRDHPRLFLM 132
Query 120 RLRKEVQPSAIRFFGCGEYGEQFLRPHYHMVVFGHDFSDRYLFGHDKKGTKLYRSPQLEK 179
RLR+ + P IR+FGCGEYG + RPHYH++++ +DF D+ L K+G L+ S +L +
Sbjct 133 RLREHIYPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSK-KRGNPLFVSEKLMR 191
Query 180 VWPKGFSSVCEVEFDVAKYVAIY-LQKPPAD-------GRHRAFVNMSRNPGIG---YQA 228
+WP GFS+V V A YVA Y L+K D R F+ S PGIG Y+
Sbjct 192 LWPFGFSTVGSVTRQSAGYVARYSLKKVNGDISQDHYGQRLPEFLMCSLKPGIGADWYEK 251
Query 229 IKPNLMETDKL-YQD-GKYIHL--PRYYLKVLERSYPDQIADLKERRINH--AISEYVEM 282
K ++ D L QD GK PRYY K+ R P+++ ++K++RI A+ E +
Sbjct 252 YKCDVYPQDYLVVQDKGKSFKTRPPRYYDKLHSRFDPEEMDEVKQKRIEKVMALPELTQD 311
Query 283 MANLKHHI 290
A +K +I
Sbjct 312 KAEVKQYI 319
>gi|575096096|emb|CDL66976.1| unnamed protein product [uncultured bacterium]
Length=296
Score = 149 bits (375), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 127/240 (53%), Gaps = 17/240 (7%)
Query 60 FVPCGKCIECRISHSIEWAYRVVAETRAHEHNCMITLTYADEYLPHDMSVSMYEMQTFLK 119
VPCG+C+ECR+ + EWA R E ++H+ +TLTY D+ LP + ++ +Q F+K
Sbjct 35 LVPCGQCLECRLHRASEWALRCCHELKSHDKGIFLTLTYNDDNLPPNGTLVKKHVQDFIK 94
Query 120 RLRKEV----QPSAIRFFGCGEYGEQFLRPHYHMVVFGHDFSD-RYLFGHDKKG-TKLYR 173
RLR+ + + IR+ GEYG+ LRPHYH++VFG+ SD R L G K G L+
Sbjct 95 RLRRHIDYYGDCTKIRYLCAGEYGDLSLRPHYHLLVFGYYPSDPRLLHGLQKIGKNSLFT 154
Query 174 SPQLEKVWPKGFSSVCEVEFDVAKYVAIY-LQKPPADGRH--------RAFVNMSRNPGI 224
SP L K+W KG S + F+ A+Y Y L+K + H F+ S G+
Sbjct 155 SPTLTKLWGKGHISFGAITFESARYTCQYALKKQTGEHSHYYVDRGVIPEFMICSNRNGL 214
Query 225 GYQ--AIKPNLMETDKLYQDGKYIHLPRYYLKVLERSYPDQIADLKERRINHAISEYVEM 282
GY N+ E L +GK I +PRYY K+ ER PD A KE R A Y M
Sbjct 215 GYDFAVSHDNMFERGYLTMNGKKIGIPRYYQKICEREIPDYYASFKEMRRMSAPKVYEPM 274
>gi|313766930|gb|ADR80656.1| putative replication initiation protein [Uncultured Microviridae]
Length=402
Score = 150 bits (380), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 139/261 (53%), Gaps = 35/261 (13%)
Query 59 FFVPCGKCIECRISHSIEWAYRVVAETRAHEHNCMITLTYADEYL---PHDMSVSMYEMQ 115
F +PCG+C CR+ HS EWA R + E + H+HNC ITLT E L P S+ E Q
Sbjct 126 FNLPCGQCWGCRLQHSREWAIRCMHEAQMHDHNCFITLTINPETLERRPRPWSLEKKEFQ 185
Query 116 TFLKRLRKEVQPSAIRFFGCGEYGEQFLRPHYHMVVFGHDFSDRYLFGHDKKGTKLYRSP 175
F+ RLR+++ I++F CGEYG++ RPHYH ++FG+DF D+ L+ K G +LY SP
Sbjct 186 EFVHRLRRKIG-KKIKYFHCGEYGDENKRPHYHAIIFGYDFPDKQLW-ERKLGNELYISP 243
Query 176 QLEKVWPKGFSSVCEVEFDVAKYVAIY-LQKPPADGRHRAFVN----------------M 218
+LE +WP G+ + ++ A YVA Y +++ +G ++N M
Sbjct 244 ELENLWPHGYHRIGACTYESAHYVARYVMKRAKGEGPPEQYINPETGEVEYDLDNQYATM 303
Query 219 SRN------PGIGYQA-IKPNLMET---DKLYQDGKYIHLPRYYLKVLERSYPDQIADLK 268
SR GIG Q K + D + DG + +PRYY K LE+ P+ +LK
Sbjct 304 SRGNKKQPQNGIGNQWYWKYGWTDAHCHDYIVHDGIKMKVPRYYDKELEKYDPEYFQELK 363
Query 269 ERRINHA---ISEYVEMMANL 286
+R + I EY + M +L
Sbjct 364 AKRKEQSPETIIEYNKAMDDL 384
>gi|530695350|gb|AGT39906.1| replication initiator [Marine gokushovirus]
Length=330
Score = 141 bits (355), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/286 (35%), Positives = 130/286 (45%), Gaps = 37/286 (13%)
Query 58 QFFVPCGKCIECRISHSIEWAYRVVAETRAHEHNCMITLTYADEYLPHDMSVSMYEMQTF 117
+F +PCG C C + S +WA R + E E NC ITLTY E P S+ + Q F
Sbjct 28 EFQLPCGGCEGCLLERSRQWAVRCMHEASQWERNCFITLTY--EETPPWNSLRHGDFQKF 85
Query 118 LKRLRKEV-------------QPSAIRFFGCGEYGEQFLRPHYHMVVFGHDFSDRYLFGH 164
+KRLRK+ IRF+ GEYG Q RPHYH +F F D
Sbjct 86 MKRLRKKFYGHKEYIDVRTGKSSHPIRFYMAGEYGTQRGRPHYHACIFNFSFEDLKFLRR 145
Query 165 DKKGTKLYRSPQLEKVWPKGFSSVCEVEFDVAKYVAIYLQK------------PPADG-- 210
G+ LYRS QLE +WP GFSSV +V F+ A YVA Y+ K P G
Sbjct 146 TNSGSNLYRSTQLEGLWPHGFSSVGDVTFESAAYVARYVMKKQYQEADHLLVVDPYTGEC 205
Query 211 --RHRAFVNMSRNPGIGYQAI---KPNLMETDKLYQDGKYIHLPRYYLKVLERSYPDQIA 265
RH + MS PGIG + K ++ D + +G PRYY K LE+ PD
Sbjct 206 VERHPEYNRMSLKPGIGAGFLDKYKSDVFPNDFVVVNGHKAKPPRYYYKRLEQQDPDLYE 265
Query 266 DLKERRINHAISEYVEMMA---NLKHHITQIEYRKHRFEKIFGKPL 308
++ R + + E + + Q E K R E + KP+
Sbjct 266 QVEYSRAMKGLDQCEENTVERLGARQKVLQSEIEKIRKEIMMEKPV 311
>gi|313766924|gb|ADR80651.1| putative replication initiation protein [Uncultured Microviridae]
Length=285
Score = 138 bits (347), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 130/257 (51%), Gaps = 42/257 (16%)
Query 61 VPCGKCIECRISHSIEWAYRVVAETRAHEH---NCMITLTYADEYLPHDMSVSMYEMQTF 117
V C +CI CR+ H+ WA R+ E+ ++ NC ITLTY +E+LP D S+ Q F
Sbjct 3 VACSQCIGCRLDHAGMWASRIEHESSLYDDSNGNCFITLTYDEEHLPQDWSLDKSHFQKF 62
Query 118 LKRLRKEVQPSAIRFFGCGEYGE--------------QFLRPHYHMVVFGHDFSDRYLFG 163
+KRLRK P IR++ CGEYGE RPHYH ++F DF DR L G
Sbjct 63 MKRLRKRY-PQKIRYYHCGEYGENCRHGIHTTLCPGCNVGRPHYHAILFNIDFHDRVLVG 121
Query 164 HDKKGTKLYRSPQLEKVWPKGFSSVCEVEFDVAKYVAIYLQK----PPADGRHRA----- 214
KG + S L ++W GF+ V ++ A YVA Y K A+ +R+
Sbjct 122 Q-SKGIPHFTSDTLTEIWGHGFTQVGDLTAQSAGYVARYALKKVTGTQAEDHYRSIDLTT 180
Query 215 ---------FVNMSRNPGIG---YQAIKPNLMETDKLYQDGKYIH--LPRYYLKVLERSY 260
+ MSR PGIG Y+ K ++ +++ G + +PR+Y K++E+
Sbjct 181 GEVTYVRPEYATMSRKPGIGKEWYEKYKKDMYPSNQTPSVGGGVKNGIPRFYDKLMEKED 240
Query 261 PDQIADLKERRINHAIS 277
P+Q+ +KE+R A+
Sbjct 241 PEQLEIVKEKRKEFALD 257
Lambda K H a alpha
0.327 0.140 0.441 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1729895032296