bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters





Query= Contig-29_CDS_annotation_glimmer3.pl_2_2

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|497336460|ref|WP_009650673.1|  oxidoreductase                      39.7    1.5
gi|551267854|ref|WP_022888023.1|  tryptophan synthase subunit beta    37.7    5.6
gi|494029607|ref|WP_006971747.1|  hypothetical protein                35.4    8.5


>gi|497336460|ref|WP_009650673.1| oxidoreductase [Campylobacter sp. FOBRC14]
 gi|401016189|gb|EJP74957.1| PepSY domain protein [Campylobacter sp. FOBRC14]
Length=388

 Score = 39.7 bits (91),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 0/50 (0%)

Query  4   AIGQSHNGEITTLSNRNSHVRALLGSRQRRSEVVVELGGLEGHTAFDNIG  53
           AI   H+  I  L+ RNSHV+ALL SR + SEV+ +    +G      IG
Sbjct  36  AIISYHDEIIDALNARNSHVKALLPSRMKVSEVLAKFSAQKGEFYLSFIG  85


>gi|551267854|ref|WP_022888023.1| tryptophan synthase subunit beta [Agromyces italicus]
Length=402

 Score = 37.7 bits (86),  Expect = 5.6, Method: Compositional matrix adjust.
 Identities = 40/163 (25%), Positives = 71/163 (44%), Gaps = 22/163 (13%)

Query  1    MVNAIGQSHNGEITTLSNRNSHVRALLGSRQRRSEVVVELGGLEGHTAFDNIGDIVGAVR  60
            + +AI ++    +T ++  N ++   +       E+V +   + G  A   + D+ GA+ 
Sbjct  169  LKDAINEAMRDWVTNVATTN-YLFGTVAGPHPFPEMVRDFQKIIGEEARQQVLDLTGALP  227

Query  61   TCKGSIIHGDVEGVGEVFITEPLIHDEGVGTEGESVNGEVGNTSRDAHVVGNGANRPATR  120
            T   + + G    +G   I    + DEGVG  G    GE  +T R A  +        T+
Sbjct  228  TAVAACVGGGSNAIG---IFHAFLDDEGVGLFGFEAGGEGVDTPRHAATI--------TK  276

Query  121  GRSHLGHGILHG------RNPGGLSVLTHELTPMLPYDTVGHE  157
            GR     G+LHG      ++  G ++ +H ++  L Y  VG E
Sbjct  277  GRP----GVLHGARSYMLQDDDGQTIESHSISAGLDYPGVGPE  315


>gi|494029607|ref|WP_006971747.1| hypothetical protein [Plesiocystis pacifica]
 gi|149819613|gb|EDM79040.1| hypothetical protein PPSIR1_10570 [Plesiocystis pacifica SIR-1]
Length=108

 Score = 35.4 bits (80),  Expect = 8.5, Method: Compositional matrix adjust.
 Identities = 31/89 (35%), Positives = 38/89 (43%), Gaps = 29/89 (33%)

Query  69   GDVEGVGEVFITEPLIHDEGVGTEGESVNGEVGNTSRDAHVVGNGANRPATRGRSHLGHG  128
            G  E VG++F  E L+ D  VG   ESV  E G                A RG  HLGH 
Sbjct  43   GFAEEVGKIF--ESLMVDLVVGVASESVGPEPG----------------AARGLVHLGH-  83

Query  129  ILHGRNPGGLSVLTHELTPMLPYDTVGHE  157
                       +L HEL P+L  DT+G +
Sbjct  84   ----------ELLAHELHPVLAVDTIGRQ  102



Lambda      K        H        a         alpha
   0.315    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1040062966173