bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-33_CDS_annotation_glimmer3.pl_2_3
Length=588
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094564|emb|CDL65921.1| unnamed protein product 983 0.0
gi|47566141|ref|YP_022479.1| structural protein 567 0.0
gi|9634949|ref|NP_054647.1| structural protein 565 0.0
gi|9791178|ref|NP_063895.1| hypothetical protein 563 0.0
gi|77020115|ref|YP_338238.1| putative major coat protein 563 0.0
gi|17402851|ref|NP_510872.1| hypothetical protein PhiCPG1p2 561 0.0
gi|575096093|emb|CDL66973.1| unnamed protein product 536 0.0
gi|530695351|gb|AGT39907.1| major capsid protein 528 2e-178
gi|444297960|dbj|GAC77859.1| major capsid protein 498 3e-167
gi|12085136|ref|NP_073538.1| major capsid protein 486 2e-162
>gi|575094564|emb|CDL65921.1| unnamed protein product [uncultured bacterium]
Length=582
Score = 983 bits (2542), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/599 (83%), Positives = 520/599 (87%), Gaps = 28/599 (5%)
Query 1 MAKNSARSHRKNNRFSQIPNSPIQRSVFDRSHDYKTTMDAGYLIPFFVDEVLPGDTFKLR 60
MAKNSARSHRKNNRFSQIPNSPIQRSVFDRSHDYKTT+DAGYLIPFFVDEVLPGDTFKLR
Sbjct 1 MAKNSARSHRKNNRFSQIPNSPIQRSVFDRSHDYKTTLDAGYLIPFFVDEVLPGDTFKLR 60
Query 61 VNAFVRMNTLVAPFMDNVFMDTFFFFVPSRLVWDNWQRFCGEQKNPGDSTDFLIPSLSGT 120
VNAFVRMNTLVAPFMDNVFMDTFFFFVPSRLVWDNWQRFCGEQKNPGDSTDFLIPSLSGT
Sbjct 61 VNAFVRMNTLVAPFMDNVFMDTFFFFVPSRLVWDNWQRFCGEQKNPGDSTDFLIPSLSGT 120
Query 121 NTFANGSIFDYMGLPTGVPLNPTNTPINALPFRAYNLIYNEWFRDENLIDSIPVTTGDGP 180
NTF NGSIFDYMGLPTGVPLNPTNTPINALPFRAYNLIYNEWFRDENLIDSIPVTTGDGP
Sbjct 121 NTFTNGSIFDYMGLPTGVPLNPTNTPINALPFRAYNLIYNEWFRDENLIDSIPVTTGDGP 180
Query 181 DPVSNYTLRKRAKRHDYFTSALPWPQKGPSVDVGLTGNAPIVGFGQDGYQFNFTSDPA-D 239
DP+SNYTLRKRAKRHDYFTSALPWPQKGPSVDVGLTGNAP+VGFG DG +NF S+ +
Sbjct 181 DPISNYTLRKRAKRHDYFTSALPWPQKGPSVDVGLTGNAPVVGFG-DGQTWNFMSNTSYS 239
Query 240 GQGPSSGWQLGAADTNNMGKLQAFFGNS----------VGAGNQARAWQNYGSPSPAWTd 289
G G D N+G LQ F + NQ+ W N G+ +
Sbjct 240 GNQAVLGNPTDVLD--NVG-LQVFINREQFSTATLIPIIQETNQSGRWANIGNQDQS--- 293
Query 290 viqqqddsssvqLTALKGSDLSSFYHFGGGYLLPANPSQTPYADLSGVSAITINDLRQAF 349
+ + A++G ++F G +L + Q PYADLSGVSAITINDLRQAF
Sbjct 294 -----SGTDVSPIRAIRGDG----FYFPNG-ILSNSSGQQPYADLSGVSAITINDLRQAF 343
Query 350 QIQKFYEKWARGGSRYTETLRVMFNVISPDARLQRPEYLGGTHSRVNVVPTAQTSSTDSV 409
QIQKFYEKWARGGSRYTETLRVMFNVISPDARLQRPEYLGGTHSRVNVVPTAQTSSTDSV
Sbjct 344 QIQKFYEKWARGGSRYTETLRVMFNVISPDARLQRPEYLGGTHSRVNVVPTAQTSSTDSV 403
Query 410 SPQSNLSAFGVLGDSAHGFNKSFVEHGYVIGLCCLRADITYQQGLNRMWSRRQLFDFYWP 469
SPQSNLSAFGVLGDSAHGFNKSFVEHGYVIGL CLRADITYQQGLNRMWSRRQLFDFYWP
Sbjct 404 SPQSNLSAFGVLGDSAHGFNKSFVEHGYVIGLVCLRADITYQQGLNRMWSRRQLFDFYWP 463
Query 470 TLAHLGEQVVYNKEIYAQGTADDNGVFGYQERYAEYRYKPSMITGKLRSTDAQSLDVWHL 529
TLAHLGEQVVYN+EIY QGT DDNGVFGYQERYAEYRYKPSMITGKLRSTD+Q+LDVWHL
Sbjct 464 TLAHLGEQVVYNREIYTQGTDDDNGVFGYQERYAEYRYKPSMITGKLRSTDSQTLDVWHL 523
Query 530 AQRFDSLPKLNQDFIEENPPINRVIAVQNEPQFFADFWFDLKTSRPMPVYSVPGLVDHF 588
AQ+FD+LPKLNQDFIEENPPINRVIAVQNEPQFFADFWFDLKTSRPMPVYSVPGLVDHF
Sbjct 524 AQKFDTLPKLNQDFIEENPPINRVIAVQNEPQFFADFWFDLKTSRPMPVYSVPGLVDHF 582
>gi|47566141|ref|YP_022479.1| structural protein [Chlamydia phage 3]
gi|47522476|emb|CAD79477.1| structural protein [Chlamydia phage 3]
Length=565
Score = 567 bits (1462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/598 (51%), Positives = 377/598 (63%), Gaps = 43/598 (7%)
Query 1 MAKNSARSHRKNNRFSQIPNSPIQRSVFDRSHDYKTTMDAGYLIPFFVDEVLPGDTFKLR 60
M +N ++ F+Q+P++ IQRS FDRS KTT +AGYLIP F DEVLPGDTF L+
Sbjct 1 MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFNAGYLIPIFCDEVLPGDTFSLK 60
Query 61 VNAFVRMNTLVAPFMDNVFMDTFFFFVPSRLVWDNWQRFCGEQKNPGDSTDFLIPSLSG- 119
RM T + P MDN+ +DT +FFVP RL+W N+Q+FCGEQ NP DSTDFL P L+
Sbjct 61 EAFLARMATPIFPLMDNLRLDTQYFFVPLRLIWSNFQKFCGEQDNPDDSTDFLTPVLTAP 120
Query 120 TNTFANGSIFDYMGLPTGVPLNPTNTPINALPFRAYNLIYNEWFRDENLIDSIPVTTGDG 179
T F GSI DY+GLPT V A RAYNLI+N+++RDEN+ +S+ V GD
Sbjct 121 TGGFTEGSIHDYLGLPTKV----AGVQCAAFWHRAYNLIWNQYYRDENIQESVEVQMGDT 176
Query 180 P-DPVSNYTLRKRAKRHDYFTSALPWPQKGPSVDVGLTGNAPIVGFGQDGYQFNFTSDPA 238
D V NY L KR KR+DYFTS LPWPQKGP+V +G+ G API +G N S+
Sbjct 177 TTDEVKNYELLKRGKRYDYFTSCLPWPQKGPAVTIGVGGKAPI-----EGLYMNVNSN-- 229
Query 239 DGQGPSSGWQLGAADTNNMGKLQAFFGNSVGAGNQARAWQNYGSPSPAWTdviqqqddss 298
P + L + T + LQ GN + + + AW V Q +
Sbjct 230 ---NPVGKFVLDSQSTPRV--LQDLQGNKLSGIAAYNQTGKHVYVNSAWYTVTPQSE--- 281
Query 299 svqLTALKGSDLSSFYHFGGGYLLPANPSQTPYADLSGVSAITINDLRQAFQIQKFYEKW 358
G+ L + G Y P YADL S +TIN LR+AFQ+QK YE+
Sbjct 282 -------PGATLEN-----GNYYTTQKPQI--YADLGATSPVTINSLREAFQLQKLYERD 327
Query 359 ARGGSRYTETLRVMFNVISPDARLQRPEYLGGTHSRVNVVPTAQTSSTDSVSPQSNLSAF 418
ARGG+RY E +R FNV SPDARLQR EYLGG+ + VN+ P QTSSTDS SPQ NL+A+
Sbjct 328 ARGGTRYIEIIRSHFNVQSPDARLQRAEYLGGSSTPVNISPIPQTSSTDSTSPQGNLAAY 387
Query 419 GVLGDSAHGFNKSFVEHGYVIGLCCLRADITYQQGLNRMWSRRQLFDFYWPTLAHLGEQV 478
G S F KSF EHG ++GL +RAD+ YQQGL+RMWSRR +DFYWP L+HLGEQ
Sbjct 388 GTAIGSKRVFTKSFTEHGVILGLASVRADLNYQQGLDRMWSRRTRWDFYWPALSHLGEQA 447
Query 479 VYNKEIYAQGTADDNG--------VFGYQERYAEYRYKPSMITGKLRSTDAQSLDVWHLA 530
V NKEIY QG + N VFGYQER+AEYRYK S ITGK RS SLD WHLA
Sbjct 448 VLNKEIYCQGPSVKNSGGEIVDEQVFGYQERFAEYRYKTSKITGKFRSNATSSLDSWHLA 507
Query 531 QRFDSLPKLNQDFIEENPPINRVIAVQNEPQFFADFWFDLKTSRPMPVYSVPGLVDHF 588
Q F++LP L+ +FIEENPP++RV+AV NEP F D WF L+ +RPMPVYSVPG +DHF
Sbjct 508 QEFENLPTLSPEFIEENPPMDRVLAVSNEPHFLLDGWFSLRCARPMPVYSVPGFIDHF 565
>gi|9634949|ref|NP_054647.1| structural protein [Chlamydia phage 2]
gi|7406589|emb|CAB85589.1| structural protein [Chlamydia phage 2]
Length=565
Score = 565 bits (1457), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/600 (51%), Positives = 376/600 (63%), Gaps = 47/600 (8%)
Query 1 MAKNSARSHRKNNRFSQIPNSPIQRSVFDRSHDYKTTMDAGYLIPFFVDEVLPGDTFKLR 60
M +N ++ F+Q+P++ IQRS FDRS KTT DAGYLIP F DEVLPGDTF L+
Sbjct 1 MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFDAGYLIPIFCDEVLPGDTFSLK 60
Query 61 VNAFVRMNTLVAPFMDNVFMDTFFFFVPSRLVWDNWQRFCGEQKNPGDSTDFLIPSLSG- 119
RM T + P MDN+ +DT +FFVP RL+W N+Q+FCGEQ NP DSTDFL P L+
Sbjct 61 EAFLARMATPIFPLMDNLRLDTQYFFVPLRLLWSNFQKFCGEQDNPDDSTDFLTPILTAP 120
Query 120 TNTFANGSIFDYMGLPTGVPLNPTNTPINALPFRAYNLIYNEWFRDENLIDSIPVTTGDG 179
F GSI DY+GLPT V A RAYNLI+N+++RDEN+ +S+ V GD
Sbjct 121 AGGFTEGSIHDYLGLPTKV----AGVQCVAFWHRAYNLIWNQYYRDENIQESVEVQMGDT 176
Query 180 P-DPVSNYTLRKRAKRHDYFTSALPWPQKGPSVDVGLTGNAPIVGFGQDGYQFNFTSDPA 238
D V+NYTL KR KR+DYFTS LPWPQKGP+V +G+ G API G +
Sbjct 177 TTDEVNNYTLLKRGKRYDYFTSCLPWPQKGPAVTIGVGGKAPIEGLYMN----------V 226
Query 239 DGQGPSSGWQLGAADTNNMGKLQAFFGNSVGAGNQARAWQNYGSPSPAWTdviqqqddss 298
+ P + L + T + LQ GN + + + AW
Sbjct 227 NSSNPVGKFVLDSQSTPRV--LQDLQGNKLSGIAAYNQTGKHVYVNSAW----------- 273
Query 299 svqLTALKGSDLSSFYHFGGGYLLPANPSQTP--YADLSGVSAITINDLRQAFQIQKFYE 356
T S+ ++ G Y +Q P YADL S +TIN LR+AFQ+QK YE
Sbjct 274 ---YTVTPQSEPAATLENGNYYT-----TQKPQIYADLGATSPVTINSLREAFQLQKLYE 325
Query 357 KWARGGSRYTETLRVMFNVISPDARLQRPEYLGGTHSRVNVVPTAQTSSTDSVSPQSNLS 416
+ ARGG+RY E +R FNV SPDARLQR EYLGG+ + VN+ P QTSSTDS SPQ NL+
Sbjct 326 RDARGGTRYIEIIRSHFNVQSPDARLQRAEYLGGSSTPVNISPIPQTSSTDSTSPQGNLA 385
Query 417 AFGVLGDSAHGFNKSFVEHGYVIGLCCLRADITYQQGLNRMWSRRQLFDFYWPTLAHLGE 476
A+G S F KSF EHG ++GL +RAD+ YQQGL+RMWSRR +DFYWP L+HLGE
Sbjct 386 AYGTAIGSKRVFTKSFTEHGVILGLASVRADLNYQQGLDRMWSRRTRWDFYWPALSHLGE 445
Query 477 QVVYNKEIYAQGTA--------DDNGVFGYQERYAEYRYKPSMITGKLRSTDAQSLDVWH 528
Q V NKEIY QG + D+ VFGYQER+AEYRYK S ITGK RS SLD WH
Sbjct 446 QAVLNKEIYCQGPSVKNSGGEIVDDQVFGYQERFAEYRYKTSKITGKFRSNATSSLDSWH 505
Query 529 LAQRFDSLPKLNQDFIEENPPINRVIAVQNEPQFFADFWFDLKTSRPMPVYSVPGLVDHF 588
LAQ F++LP L+ +FIEENPP++RV+AV EP F D WF L+ +RPMPVYSVPG +DHF
Sbjct 506 LAQEFENLPTLSPEFIEENPPMDRVLAVSTEPDFLLDGWFSLRCARPMPVYSVPGFIDHF 565
>gi|9791178|ref|NP_063895.1| hypothetical protein [Chlamydia pneumoniae phage CPAR39]
gi|7190965|gb|AAF39725.1| hypothetical protein [Chlamydia pneumoniae phage CPAR39]
Length=553
Score = 563 bits (1450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/606 (50%), Positives = 377/606 (62%), Gaps = 71/606 (12%)
Query 1 MAKNSARSHRKNNRFSQIPNSPIQRSVFDRSHDYKTTMDAGYLIPFFVDEVLPGDTFKLR 60
M +N ++ F+Q+P++ IQRS FDRS KTT DAGYLIP F DEVLPGDTF L+
Sbjct 1 MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFDAGYLIPIFCDEVLPGDTFSLK 60
Query 61 VNAFVRMNTLVAPFMDNVFMDTFFFFVPSRLVWDNWQRFCGEQKNPGDSTDFLIPSLSG- 119
RM T + P MDN+ +DT +FFVP RL+W N+Q+FCGEQ NPGDSTDFL P L+
Sbjct 61 EAFLARMATPIFPLMDNLRLDTQYFFVPLRLIWSNFQKFCGEQDNPGDSTDFLTPVLTAP 120
Query 120 TNTFANGSIFDYMGLPTGVPLNPTNTPINALPFRAYNLIYNEWFRDENLIDSIPVTTGDG 179
+ F GSI DY+GLPT V A RAYNLI+N+++RDEN+ +S+ V GD
Sbjct 121 SGGFTEGSIHDYLGLPTKV----AGIECVAFWHRAYNLIWNQYYRDENIQESVDVEMGDT 176
Query 180 -PDPVSNYTLRKRAKRHDYFTSALPWPQKGPSVDVGLTGNAPIVGFGQDGYQFNFTSDPA 238
+ V+NY L KR KR+DYFTS LPWPQKGP+V +G+ G P+ G G Q+ +S P
Sbjct 177 TSNEVNNYKLLKRGKRYDYFTSCLPWPQKGPAVTIGVGGIVPVQGLG---IQWGNSSAP- 232
Query 239 DGQGPSSGWQLGAADTNNMGKLQAFFGNSVGAGNQARAWQNYGSPSPAWTdviqqqddss 298
+S W + + F NS +P+P T
Sbjct 233 -NPITASSW---------INSVNPTFINST-------------TPTPTGT---------- 259
Query 299 svqLTALKGSDLSSFYHFGGGYLLP------ANPSQTPYADLSGVSAITINDLRQAFQIQ 352
+ ++G Y + +P+ Y DL S +TIN LR+AFQ+Q
Sbjct 260 ------------NQILNYGQAYYIKKPGEATTDPTPRAYVDLGSTSPVTINSLREAFQLQ 307
Query 353 KFYEKWARGGSRYTETLRVMFNVISPDARLQRPEYLGGTHSRVNVVPTAQTSSTDSVSPQ 412
K YE+ ARGG+RY E +R FNV SPDARLQR EYLGG+ + VN+ P QTSSTDS SPQ
Sbjct 308 KLYERDARGGTRYIEIIRSHFNVQSPDARLQRAEYLGGSSTPVNISPIPQTSSTDSTSPQ 367
Query 413 SNLSAFGVLGDSAHGFNKSFVEHGYVIGLCCLRADITYQQGLNRMWSRRQLFDFYWPTLA 472
NL+A+G S F KSF EHG ++GL +RAD+ YQQGL+RMWSRR +DFYWP L+
Sbjct 368 GNLAAYGTAIGSKRVFTKSFTEHGVILGLASVRADLNYQQGLDRMWSRRTRWDFYWPALS 427
Query 473 HLGEQVVYNKEIYAQGTA----------DDNGVFGYQERYAEYRYKPSMITGKLRSTDAQ 522
HLGEQ V NKEIY QG A D VFGYQER+AEYRYK S ITGK RS
Sbjct 428 HLGEQAVLNKEIYCQGPAVKDAQNGNVVVDEQVFGYQERFAEYRYKTSKITGKFRSNATG 487
Query 523 SLDVWHLAQRFDSLPKLNQDFIEENPPINRVIAVQNEPQFFADFWFDLKTSRPMPVYSVP 582
SLD WHLAQ+F++LP L+ +FIEENPP++RV+AV EP F D WF L+ +RPMPVYSVP
Sbjct 488 SLDAWHLAQQFENLPTLSPEFIEENPPMDRVVAVDTEPDFLLDGWFSLRCARPMPVYSVP 547
Query 583 GLVDHF 588
GL+DHF
Sbjct 548 GLIDHF 553
>gi|77020115|ref|YP_338238.1| putative major coat protein [Chlamydia phage 4]
gi|59940014|gb|AAX12543.1| putative major coat protein [Chlamydia phage 4]
Length=554
Score = 563 bits (1450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/602 (50%), Positives = 373/602 (62%), Gaps = 62/602 (10%)
Query 1 MAKNSARSHRKNNRFSQIPNSPIQRSVFDRSHDYKTTMDAGYLIPFFVDEVLPGDTFKLR 60
M +N ++ F+Q+P++ IQRS FDRS KTT DAGYLIP F DEVLPGDTF L+
Sbjct 1 MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFDAGYLIPIFCDEVLPGDTFSLK 60
Query 61 VNAFVRMNTLVAPFMDNVFMDTFFFFVPSRLVWDNWQRFCGEQKNPGDSTDFLIPSLSGT 120
RM T + P MDN+ +DT +FFVP RL+W N+Q+FCGEQ +PGDSTDFL P L+
Sbjct 61 EAFLARMATPIFPLMDNLRLDTQYFFVPLRLLWSNFQKFCGEQDDPGDSTDFLTPILTAP 120
Query 121 NT--FANGSIFDYMGLPTGVPLNPTNTPINALPFRAYNLIYNEWFRDENLIDSIPVTTGD 178
FA GSI DY+GLPT V A RAYNLI+N+++RDEN+ DS+ V GD
Sbjct 121 QNGGFAEGSIHDYLGLPTKV----AGVQCVAFWHRAYNLIWNQYYRDENIQDSVEVQMGD 176
Query 179 G-PDPVSNYTLRKRAKRHDYFTSALPWPQKGPSVDVGLTGNAPIVGFGQDGYQFNFTSDP 237
D V+NY L KR KR+DYFTS LPWPQKGP+V +G+ G P+ G G Q+ ++ P
Sbjct 177 TTADEVNNYKLLKRGKRYDYFTSCLPWPQKGPAVTIGVGGIVPVQGLG---IQWGGSTGP 233
Query 238 ADGQGPSSGWQLGAADTNNMGKLQAFFG-NSVGAGNQARAWQNYGSPSPAWTdviqqqdd 296
+S W+ T Q G N + + QA + G P+
Sbjct 234 --NPITASDWRDSVNPTYVNSATQTPTGTNKILSYGQAYYIKKPGEPA------------ 279
Query 297 sssvqLTALKGSDLSSFYHFGGGYLLPANPSQTPYADLSGVSAITINDLRQAFQIQKFYE 356
+P+ Y DL S +TIN LR+AFQ+QK YE
Sbjct 280 ---------------------------TDPAPRAYVDLGSTSPVTINSLREAFQLQKLYE 312
Query 357 KWARGGSRYTETLRVMFNVISPDARLQRPEYLGGTHSRVNVVPTAQTSSTDSVSPQSNLS 416
+ ARGG+RY E +R FNV SPDARLQR EYLGG+ + VN+ P QTSSTDS SPQ NL+
Sbjct 313 RDARGGTRYIEIIRSHFNVQSPDARLQRAEYLGGSSTPVNISPIPQTSSTDSTSPQGNLA 372
Query 417 AFGVLGDSAHGFNKSFVEHGYVIGLCCLRADITYQQGLNRMWSRRQLFDFYWPTLAHLGE 476
A+G S F KSF EHG ++GL +RAD+ YQQGL+RMWSRR +DFYWP L+HLGE
Sbjct 373 AYGTAIGSKRVFTKSFTEHGVILGLASVRADLNYQQGLDRMWSRRTRWDFYWPALSHLGE 432
Query 477 QVVYNKEIYAQGTA----------DDNGVFGYQERYAEYRYKPSMITGKLRSTDAQSLDV 526
Q V NKEIY QG A D VFGYQER+AEYRYK S ITGK RS SLD
Sbjct 433 QAVLNKEIYCQGPAVKDAQNGNVVVDEQVFGYQERFAEYRYKTSKITGKFRSNATSSLDS 492
Query 527 WHLAQRFDSLPKLNQDFIEENPPINRVIAVQNEPQFFADFWFDLKTSRPMPVYSVPGLVD 586
WHLAQ F++LP L+ +FIEENPP++RV+AV EP F D WF L+ +RPMPVYSVPGL+D
Sbjct 493 WHLAQEFENLPTLSPEFIEENPPMDRVLAVNTEPDFLLDGWFSLRCARPMPVYSVPGLID 552
Query 587 HF 588
HF
Sbjct 553 HF 554
>gi|17402851|ref|NP_510872.1| hypothetical protein PhiCPG1p2 [Guinea pig Chlamydia phage]
Length=553
Score = 561 bits (1446), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/606 (50%), Positives = 377/606 (62%), Gaps = 71/606 (12%)
Query 1 MAKNSARSHRKNNRFSQIPNSPIQRSVFDRSHDYKTTMDAGYLIPFFVDEVLPGDTFKLR 60
M +N ++ F+Q+P++ IQRS FDRS KTT DAGYLIP F DEVLPGDTF L+
Sbjct 1 MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFDAGYLIPIFCDEVLPGDTFSLK 60
Query 61 VNAFVRMNTLVAPFMDNVFMDTFFFFVPSRLVWDNWQRFCGEQKNPGDSTDFLIPSLSG- 119
RM T + P MDN+ +DT +FFVP RL+W N+Q+FCGEQ NPGDSTDFL P L+
Sbjct 61 EAFLARMATPIFPLMDNLRLDTQYFFVPLRLLWSNFQKFCGEQDNPGDSTDFLTPVLTAP 120
Query 120 TNTFANGSIFDYMGLPTGVPLNPTNTPINALPFRAYNLIYNEWFRDENLIDSIPVTTGDG 179
+ F GSI DY+GLPT V A RAYNLI+N+++RDEN+ +S+ V GD
Sbjct 121 SGGFIEGSIHDYLGLPTKV----AGIECVAFWHRAYNLIWNQYYRDENIQESVDVEMGDT 176
Query 180 -PDPVSNYTLRKRAKRHDYFTSALPWPQKGPSVDVGLTGNAPIVGFGQDGYQFNFTSDPA 238
+ V+NY L KR KR+DYFTS LPWPQKGP+V +G+ G P+ G G Q+ +S P
Sbjct 177 TSNEVNNYKLLKRGKRYDYFTSCLPWPQKGPAVTIGVGGIVPVQGLG---IQWGNSSAP- 232
Query 239 DGQGPSSGWQLGAADTNNMGKLQAFFGNSVGAGNQARAWQNYGSPSPAWTdviqqqddss 298
+S W + + F NS +P+P T
Sbjct 233 -NPITASSW---------INSVNPTFINST-------------TPTPTGT---------- 259
Query 299 svqLTALKGSDLSSFYHFGGGYLLP------ANPSQTPYADLSGVSAITINDLRQAFQIQ 352
+ ++G Y + +P+ Y DL S +TIN LR+AFQ+Q
Sbjct 260 ------------NKILNYGQAYYIKKPGEATTDPTPRAYVDLGSTSPVTINSLREAFQLQ 307
Query 353 KFYEKWARGGSRYTETLRVMFNVISPDARLQRPEYLGGTHSRVNVVPTAQTSSTDSVSPQ 412
K YE+ ARGG+RY E +R FNV SPDARLQR EYLGG+ + VN+ P QTSSTDS SPQ
Sbjct 308 KLYERDARGGTRYIEIIRSHFNVQSPDARLQRAEYLGGSSTPVNISPIPQTSSTDSTSPQ 367
Query 413 SNLSAFGVLGDSAHGFNKSFVEHGYVIGLCCLRADITYQQGLNRMWSRRQLFDFYWPTLA 472
NL+A+G S F KSF EHG ++GL +RAD+ YQQGL+RMWSRR +DFYWP L+
Sbjct 368 GNLAAYGTAIGSKRVFTKSFTEHGVILGLASVRADLNYQQGLDRMWSRRTRWDFYWPALS 427
Query 473 HLGEQVVYNKEIYAQGTA----------DDNGVFGYQERYAEYRYKPSMITGKLRSTDAQ 522
HLGEQ V NKEIY QG A D VFGYQER+AEYRYK S ITGK RS
Sbjct 428 HLGEQAVLNKEIYCQGPAVKDAQNGNVVVDEQVFGYQERFAEYRYKTSKITGKFRSNATG 487
Query 523 SLDVWHLAQRFDSLPKLNQDFIEENPPINRVIAVQNEPQFFADFWFDLKTSRPMPVYSVP 582
SLD WHLAQ+F++LP L+ +FIEENPP++RV+AV EP F D WF L+ +RPMPVYSVP
Sbjct 488 SLDAWHLAQQFENLPTLSPEFIEENPPMDRVVAVDTEPDFLLDGWFSLRCARPMPVYSVP 547
Query 583 GLVDHF 588
GL+DHF
Sbjct 548 GLIDHF 553
>gi|575096093|emb|CDL66973.1| unnamed protein product [uncultured bacterium]
Length=574
Score = 536 bits (1381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/614 (48%), Positives = 368/614 (60%), Gaps = 84/614 (14%)
Query 6 ARSHRKNNRFSQIPNSPIQRSVFDRSHDYKTTMDAGYLIPFFVDEVLPGDTFKLRVNAFV 65
AR RF+ P + I+RS FDRS YKTT D G LIP+FVDEVLPGDTFKL V F
Sbjct 14 ARISSNQGRFAMQPQADIRRSRFDRSFVYKTTFDEGKLIPYFVDEVLPGDTFKLSVTEFC 73
Query 66 RMNTLVAPFMDNVFMDTFFFFVPSRLVWDNWQRFCGEQKNPGDSTDFLIPSLSGTN---- 121
R+ T + PFMDN+ DT FFFVP RLVWDN+ R CGEQ NP DSTDF IP + N
Sbjct 74 RLATPICPFMDNLHFDTHFFFVPYRLVWDNFVRMCGEQDNPEDSTDFSIPQVRYDNLSKS 133
Query 122 TFANGSIFDYMGL--------PTGVPLNPTNTPINALPFRAYNLIYNEWFRDENLIDSIP 173
TF G++ DY G+ +GV ++ALPFRAY LI+NEWFRDENL S+
Sbjct 134 TFI-GTLVDYFGISSANFGSDKSGVT---ELVSVSALPFRAYWLIWNEWFRDENLQSSVK 189
Query 174 VTTGDGPDPVSN-------------------YTLRKRAKRHDYFTSALPWPQKGPSVDVG 214
V+ GD V N Y R KR+DYFTS LPWPQKGP V++
Sbjct 190 VSMGDTNSAVDNMGSGTGNVNYSFPSGVTSYYHCAPRGKRYDYFTSCLPWPQKGPGVELP 249
Query 215 LTGNAPIVGFGQDGYQFNFTSDPADGQGPSSGWQLGAADTNNMGKLQAFFGNSVGAGNQA 274
L A + G Q+ S +G SG+ +N+G++ VG +
Sbjct 250 LGSTANVSG--QNNISLTLPSVYYNGD-TGSGY-------SNLGQM-------VGKQLSS 292
Query 275 RAWQNYGSPSPAWTdviqqqddsssvqLTALKGSDLSSFYHFGGGYLLPANPSQTPYADL 334
+ Y PA G L + S DL
Sbjct 293 ARQETYSYIKPA-------------------------------GNLTLNGSMSGLS-VDL 320
Query 335 SGVSAITINDLRQAFQIQKFYEKWARGGSRYTETLRVMFNVISPDARLQRPEYLGGTHSR 394
S ++ITIN LRQAF +Q++YE ARGG+RYTE L+ F V +PD+RLQRPEYLGG S
Sbjct 321 SSATSITINSLRQAFMLQRYYEVDARGGTRYTEKLQAHFGVTNPDSRLQRPEYLGGRSSM 380
Query 395 VNVVPTAQTSSTDSVSPQSNLSAFGVLGDSAHGFNKSFVEHGYVIGLCCLRADITYQQGL 454
N+ P AQTSST+ +SPQ N++A+G+ G + FNKSF E G VIGLC +RAD+TYQQG
Sbjct 381 FNINPVAQTSSTNDISPQGNMAAYGIHGRTYRAFNKSFTEFGVVIGLCSVRADLTYQQGT 440
Query 455 NRMWSRRQLFDFYWPTLAHLGEQVVYNKEIYAQGTADDNGVFGYQERYAEYRYKPSMITG 514
RMW R+ DFYWP AHLGEQ V N+EIY QGT+ D GVFGYQERYAEYRYKP+ ITG
Sbjct 441 ERMWFRKDDLDFYWPEFAHLGEQAVLNQEIYVQGTSADTGVFGYQERYAEYRYKPNKITG 500
Query 515 KLRSTDAQSLDVWHLAQRFDSLPKLNQDFIEENPPINRVIAVQNEPQFFADFWFDLKTSR 574
+ RST Q+LDVWHLAQ+FDSLPKL FI+++PP++RV+AV + P F D F L+ R
Sbjct 501 QFRSTYKQTLDVWHLAQKFDSLPKLGDQFIQDHPPVSRVVAVPSYPHFLLDVKFHLQCVR 560
Query 575 PMPVYSVPGLVDHF 588
P+P++S+PGL+ HF
Sbjct 561 PLPLFSIPGLMPHF 574
>gi|530695351|gb|AGT39907.1| major capsid protein [Marine gokushovirus]
Length=539
Score = 528 bits (1359), Expect = 2e-178, Method: Compositional matrix adjust.
Identities = 286/598 (48%), Positives = 377/598 (63%), Gaps = 70/598 (12%)
Query 1 MAKN-SARSHRKNNRFSQIPNSPIQRSVFDRSHDYKTTMDAGYLIPFFVDEVLPGDTFKL 59
M +N SA +H+ FS IP + I RS FD KT D+GYL+P VDEVLPGD+ L
Sbjct 2 MHRNKSASAHQ----FSMIPRAEIPRSKFDAQKTLKTAFDSGYLVPILVDEVLPGDSMNL 57
Query 60 RVNAFVRMNTLVAPFMDNVFMDTFFFFVPSRLVWDNWQRFCGEQK-NPGDSTDFLIPSLS 118
R+ AF R+ T + P MDN+++DTFFFFVP+RL+W NWQRF GE+ +P S D+ IP+++
Sbjct 58 RMTAFTRLATPLFPVMDNMYLDTFFFFVPNRLLWSNWQRFMGERDPDPDSSIDYTIPTMT 117
Query 119 GTNT-FANGSIFDYMGLPTGVPLNP-TNTPINALPFRAYNLIYNEWFRDENLIDSIPVTT 176
N +A S+ DYMGLPT ++ ++ N+L RAYNLI+NEWFRDENL DS+ V
Sbjct 118 SPNGGYAVNSLQDYMGLPTAGQVDAGSSISHNSLFTRAYNLIWNEWFRDENLQDSVVVDK 177
Query 177 GDGPDPVSNYTLRKRAKRHDYFTSALPWPQKGPSVDVGLTGNAPIVGFGQDGYQFNFTSD 236
GDGPD ++YTL +R KRHDYFTSALPWPQKG +V + L G+A +V +N T D
Sbjct 178 GDGPDTYTDYTLLRRGKRHDYFTSALPWPQKGDAVTLPLGGSANVV--------YNDTGD 229
Query 237 PADGQGPSSGWQLGAADTNNMGKLQAFFGNSVGAGNQARAWQNYGSPSPAWTdviqqqdd 296
PA + V GN WT ++
Sbjct 230 PA-------------------------YIREVSTGN-------------VWTTPSRESVS 251
Query 297 sssvqLTALKGSDLSSFYHFGGGYLLPANPSQTPYADLSGVSAITINDLRQAFQIQKFYE 356
+ ++ +++ Y +P+ + ADLS +A TIN +RQ+FQIQ+ E
Sbjct 252 KEANGNMSVPTGSVNAQY----------DPNGSLVADLSTATAATINAIRQSFQIQRLLE 301
Query 357 KWARGGSRYTETLRVMFNVISPDARLQRPEYLGGTHSRVNVVPTAQTSSTDSVSPQSNLS 416
+ ARGG+RYTE +R F VISPDAR+QRPEYLGG + + V P AQ S++ + + L
Sbjct 302 RDARGGTRYTEIVRSHFGVISPDARMQRPEYLGGGSAPIIVNPVAQQSASGASGTDTPLG 361
Query 417 AFGVLGD---SAHGFNKSFVEHGYVIGLCCLRADITYQQGLNRMWSRRQLFDFYWPTLAH 473
G +G S HGF SF EHG V+GLC +RAD+TYQQGL+RM+SR +DF++P +H
Sbjct 362 TLGAVGTGLASGHGFASSFTEHGVVVGLCSVRADLTYQQGLHRMFSRSTRYDFFFPVFSH 421
Query 474 LGEQVVYNKEIYAQGTADDNGVFGYQERYAEYRYKPSMITGKLRSTDAQSLDVWHLAQRF 533
LGEQ + NKE+YA GT+ D+ VFGYQE +AEYRYKPS +TG +RST A +LD WHLAQ F
Sbjct 422 LGEQPILNKELYATGTSTDDDVFGYQEAWAEYRYKPSQVTGLMRSTAAGTLDAWHLAQNF 481
Query 534 DSLPKLNQDFIEENPPINRVIAVQNEP---QFFADFWFDLKTSRPMPVYSVPGLVDHF 588
SLP LN FIE+ PP++RV+AV +E QF D +FD+ +RPMP+YSVPGLVDHF
Sbjct 482 GSLPTLNSTFIEDTPPVDRVVAVGSEANGQQFIFDAFFDINMARPMPMYSVPGLVDHF 539
>gi|444297960|dbj|GAC77859.1| major capsid protein, partial [uncultured marine virus]
Length=494
Score = 498 bits (1281), Expect = 3e-167, Method: Compositional matrix adjust.
Identities = 264/550 (48%), Positives = 338/550 (61%), Gaps = 62/550 (11%)
Query 44 IPFFVDEVLPGDTFKLRVNAFVRMNTLVAPFMDNVFMDTFFFFVPSRLVWDNWQRFCGEQ 103
+PFFVDE LPGDTF + F RM T + P MDN+ MD+FFF VP RL+WDNW R GEQ
Sbjct 2 VPFFVDEALPGDTFSVSSTFFARMATPIFPIMDNLKMDSFFFAVPVRLLWDNWARMHGEQ 61
Query 104 KNPGDSTDFLIPSLSG--TNTFANGSIFDYMGLPTGVPLNPTNTPINALPFRAYNLIYNE 161
+NPGDSTDF++P+++ N + GS+ DY+GLPTG+P + ++L RA+NLI+NE
Sbjct 62 RNPGDSTDFVVPTMTSPPINGYDEGSLEDYLGLPTGIP----DLEHSSLFHRAHNLIHNE 117
Query 162 WFRDENLIDSIPVTTGDGPDPVSNYTLRKRAKRHDYFTSALPWPQKGPSVDVGLTGNAPI 221
WFRDENL DS+ DGPD +Y L +R+KRHDYFTSALPWPQKG S+ + L A +
Sbjct 118 WFRDENLTDSVINNVDDGPDSNLDYALYRRSKRHDYFTSALPWPQKGESISIPLGTRADV 177
Query 222 VGFGQDGYQFNFTSDPADGQGPSSGWQLGAADTNNMGKLQAFFGNSVGAGNQARAWQNYG 281
G G++ F G + A ++ G++Q +G G+
Sbjct 178 KGIGKEDQTF--------------GASVNAYESGGTGQVQYLSATRIGDGSAGETHSMEE 223
Query 282 SPSPAWTdviqqqddsssvqLTALKGSDLSSFYHFGGGYLLPANPSQTPYADLSGVSAIT 341
P+ P P+ YADL+ +A T
Sbjct 224 DPNN-------------------------------------PGFPNI--YADLTTATAAT 244
Query 342 INDLRQAFQIQKFYEKWARGGSRYTETLRVMFNVISPDARLQRPEYLGGTHSRV---NVV 398
IN LRQ+FQIQK E+ ARGG+R TE + F V SPDAR+QRPEYLGG + + V
Sbjct 245 INQLRQSFQIQKMLERDARGGTRLTEVILAHFGVRSPDARMQRPEYLGGGSAPIALQQVA 304
Query 399 PTAQTSSTDSVSPQSNLSAFGVLGDSAHGFNKSFVEHGYVIGLCCLRADITYQQGLNRMW 458
T T++ +PQ NL+A+G+ S + F KSF EH ++G +RADITYQQGLNRM+
Sbjct 305 STVPNDFTENNTPQGNLAAYGIGVSSNNSFTKSFTEHCIILGYVNVRADITYQQGLNRMF 364
Query 459 SRRQLFDFYWPTLAHLGEQVVYNKEIYAQGTADDNGVFGYQERYAEYRYKPSMITGKLRS 518
SR +DFY+P L+H+GEQ V NKEIYAQG D VFGYQER+AEYRYKPS I+G RS
Sbjct 365 SRSTRYDFYYPALSHIGEQAVLNKEIYAQGLPADEDVFGYQERHAEYRYKPSQISGAFRS 424
Query 519 TDAQSLDVWHLAQRFDSLPKLNQDFIEENPPINRVIAVQNEPQFFADFWFDLKTSRPMPV 578
+ A LD WHL+Q F +LP L+Q FIEENPPI+RVIAV EP F D + +K +RPMPV
Sbjct 425 SAAAPLDAWHLSQDFATLPVLDQTFIEENPPIDRVIAVPTEPHFLFDSYTSMKCARPMPV 484
Query 579 YSVPGLVDHF 588
Y VPGL+DHF
Sbjct 485 YGVPGLIDHF 494
>gi|12085136|ref|NP_073538.1| major capsid protein [Bdellovibrio phage phiMH2K]
gi|75089173|sp|Q9G059.1|F_BPPHM RecName: Full=Capsid protein VP1; Short=VP1 [Bdellovibrio phage
phiMH2K]
gi|12017984|gb|AAG45340.1|AF306496_1 Vp1 [Bdellovibrio phage phiMH2K]
Length=533
Score = 486 bits (1252), Expect = 2e-162, Method: Compositional matrix adjust.
Identities = 270/587 (46%), Positives = 337/587 (57%), Gaps = 64/587 (11%)
Query 8 SHRKNNRFSQIPNSPIQRSVFDRSHDYKTTMDAGYLIPFFVDEVLPGDTFKLRVNAFVRM 67
S + F+QIP+ RS F+RS K T L P F+DE+LPGDT + F+R+
Sbjct 5 SRHNQHSFAQIPSVHTTRSKFNRSFGTKDTFKFDDLTPIFIDEILPGDTINMNTKTFIRL 64
Query 68 NTLVAPFMDNVFMDTFFFFVPSRLVWDNWQRFCGEQKNPGDSTDFLIPSLSG-TNTFANG 126
T V P MD + +D +FFFVP RLVWDNW++F G Q NP DSTD+LIP+++ F N
Sbjct 65 ATQVVPVMDRMMLDFYFFFVPCRLVWDNWEKFNGAQDNPSDSTDYLIPTITAPAGGFENM 124
Query 127 SIFDYMGLPTGVPLNPTNTPINALPFRAYNLIYNEWFRDENLIDSIPVTTGDGPDPVSNY 186
SI+D+ G+PT V N INALPFRAYNLIYN+WFRD+NLI I V GDGPD ++Y
Sbjct 125 SIYDHFGIPTQV----ANLEINALPFRAYNLIYNDWFRDQNLIGKIAVPKGDGPDNHADY 180
Query 187 TLRKRAKRHDYFTSALPWPQKGPSVDVGLTGNAPIVGFGQDGYQFNFTSDPADGQGPSSG 246
L K AK HDYFTSALPWPQKG +V++ + +API + + +G P
Sbjct 181 QLLKAAKPHDYFTSALPWPQKGMAVEMPIGNSAPIT----------YVPNAGNGPYPHFN 230
Query 247 WQLGAADTNNMGKL-QAFFGNSVGAGNQARAWQNYGSPSPAWTdviqqqddsssvqLTAL 305
W N G L Q FG G +A +
Sbjct 231 WVQTPGGPGNNGALSQVTFG-----GQKA----------------------------ISA 257
Query 306 KGSDLSSFYHFGGGYLLPANPSQTPYADLSGVSAITINDLRQAFQIQKFYEKWARGGSRY 365
G+D + +P T ADLS +A TIN LRQA +Q E ARGG+RY
Sbjct 258 AGNDPIGY-----------DPQGTLIADLSSATAATINQLRQAMMMQSLLELDARGGTRY 306
Query 366 TETLRVMFNVISPDARLQRPEYLGGTHSRVNVVPTAQTSSTDSVSPQSNLSAFGVLGDSA 425
E L+ FNVIS D RLQRPEYL G + P QTSS+ + SPQ NL+AF +
Sbjct 307 VEILKSHFNVISLDFRLQRPEYLSGGTIDLQQNPVPQTSSSTTDSPQGNLAAFSTASEFG 366
Query 426 H--GFNKSFVEHGYVIGLCCLRADITYQQGLNRMWSRRQLFDFYWPTLAHLGEQVVYNKE 483
+ GF+KSFVEHGYV+G R +TYQQGL++MWSR+ +DF+WP LGEQ + NKE
Sbjct 367 NKIGFSKSFVEHGYVLGFIRARGQVTYQQGLHKMWSRQTRWDFFWPKFQELGEQAILNKE 426
Query 484 IYAQGTADDNGVFGYQERYAEYRYKPSMITGKLRSTDAQSLDVWHLAQRFDSLPKLNQDF 543
IYAQG A D+ +FGYQERY EYR++PS I G+ RS A+SLDVWHLA+ F P LN+ F
Sbjct 427 IYAQGNATDSEIFGYQERYGEYRFRPSEIKGQFRSNFAESLDVWHLAEYFTVKPSLNKTF 486
Query 544 IEENPPINRVIAVQ--NEPQFFADFWFDLKTSRPMPVYSVPGLVDHF 588
IE N PI R + V + P DFWFD RPM Y VP F
Sbjct 487 IESNTPIERSLVVTRPDYPDLIGDFWFDYTHVRPMVTYGVPATFGRF 533
Lambda K H a alpha
0.320 0.137 0.430 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4346759288298