bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-39_CDS_annotation_glimmer3.pl_2_2
Length=716
Score E
Sequences producing significant alignments: (Bits) Value
gi|649557305|gb|KDS63784.1| capsid family protein 83.2 3e-14
gi|492501782|ref|WP_005867318.1| hypothetical protein 84.3 1e-13
gi|649569140|gb|KDS75238.1| capsid family protein 83.2 1e-13
gi|649555287|gb|KDS61824.1| capsid family protein 83.2 2e-13
gi|494610271|ref|WP_007368517.1| capsid protein 82.4 3e-13
gi|547920049|ref|WP_022322420.1| capsid protein VP1 81.3 9e-13
gi|494308783|ref|WP_007173938.1| hypothetical protein 76.3 3e-11
gi|609718276|emb|CDN73650.1| conserved hypothetical protein 75.1 7e-11
gi|494306153|ref|WP_007173049.1| hypothetical protein 75.1 8e-11
gi|496521299|ref|WP_009229582.1| capsid protein 73.2 3e-10
>gi|649557305|gb|KDS63784.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649559156|gb|KDS65543.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 6]
Length=245
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/246 (29%), Positives = 113/246 (46%), Gaps = 20/246 (8%)
Query 473 LNRIAVSGGSYRDWQEAVFGVRVSRAA-ESPIYVGGYASEIVFDEVVSTAAFESGETGQE 531
R A SG Y + + FGVR S A + P ++GG + I EV+ T++ +S
Sbjct 18 FERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSEVLQTSSTDS----TS 73
Query 532 PLGSLAGRGRETSKRGGKNIKIRCEEPSLIMILGSIVPRVDYSQG-NKWWTRVDTMNDFH 590
P ++AG G G EE IM + SI PR Y QG K + + D M DF+
Sbjct 74 PQANMAGHGISAGVNHG--FTRYFEEHGYIMGIMSIRPRTGYQQGVPKDFRKFDNM-DFY 130
Query 591 KPNLDQIGFQELLSQEMHGRAWRVNANYKTTDFSVGKQPAWTEYTTTVNETYGDFAAGEP 650
P +G QE+ ++E++ +N + + + G P + EY + NE +GDF
Sbjct 131 FPEFAHLGEQEIKNEELY-----LNESDAANEGTFGYTPRYAEYKYSQNEVHGDFRGN-- 183
Query 651 LEYMAFNRVYDVANDPKLKDATTYIDPQIFNKAFANSNLDAKNFWIQIGFDVIGRRVKSA 710
+ + NR++ P L TT+++ N+ FA + +W+QI D+ R+
Sbjct 184 MAFWHLNRIF--KEKPNLN--TTFVECNPSNRVFATAETSDDKYWVQIYQDIKALRLMPK 239
Query 711 REIPNL 716
P L
Sbjct 240 YGTPML 245
>gi|492501782|ref|WP_005867318.1| hypothetical protein [Parabacteroides distasonis]
gi|409230408|gb|EKN23272.1| hypothetical protein HMPREF1059_03257 [Parabacteroides distasonis
CL09T03C24]
Length=538
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 115/246 (47%), Gaps = 20/246 (8%)
Query 473 LNRIAVSGGSYRDWQEAVFGVRVSRA-AESPIYVGGYASEIVFDEVVSTAAFESGETGQE 531
R A SG Y + + FGVR S A + P ++GG + I EV+ T+A +S
Sbjct 311 FERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSEVLQTSATDS----TS 366
Query 532 PLGSLAGRGRETSKRGGKNIKIRCEEPSLIMILGSIVPRVDYSQG-NKWWTRVDTMNDFH 590
P ++AG G G K EE I+ + SI PR Y QG K + + D M DF+
Sbjct 367 PQANMAGHGISAGVNHG--FKRYFEEHGYIIGIMSIRPRTGYQQGVPKDFRKFDNM-DFY 423
Query 591 KPNLDQIGFQELLSQEMHGRAWRVNANYKTTDFSVGKQPAWTEYTTTVNETYGDFAAGEP 650
P +G QE+ ++E++ + + + + G P + EY ++NE +GDF
Sbjct 424 FPEFAHLGEQEIKNEEVY-----LQQTPASNNGTFGYTPRYAEYKYSMNEVHGDFRGN-- 476
Query 651 LEYMAFNRVYDVANDPKLKDATTYIDPQIFNKAFANSNLDAKNFWIQIGFDVIGRRVKSA 710
+ + NR++ + P L TT+++ N+ FA + +WIQ+ DV R+
Sbjct 477 MAFWHLNRIF--SESPNLN--TTFVECNPSNRVFATAETSDDKYWIQLYQDVKALRLMPK 532
Query 711 REIPNL 716
P L
Sbjct 533 YGTPML 538
>gi|649569140|gb|KDS75238.1| capsid family protein, partial [Parabacteroides distasonis str.
3999B T(B) 6]
Length=390
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/246 (29%), Positives = 113/246 (46%), Gaps = 20/246 (8%)
Query 473 LNRIAVSGGSYRDWQEAVFGVRVSRA-AESPIYVGGYASEIVFDEVVSTAAFESGETGQE 531
R A SG Y + + FGVR S A + P ++GG + I EV+ T++ +S
Sbjct 163 FERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSEVLQTSSTDS----TS 218
Query 532 PLGSLAGRGRETSKRGGKNIKIRCEEPSLIMILGSIVPRVDYSQG-NKWWTRVDTMNDFH 590
P ++AG G G EE IM + SI PR Y QG K + + D M DF+
Sbjct 219 PQANMAGHGISAGVNHG--FTRYFEEHGYIMGIMSIRPRTGYQQGVPKDFRKFDNM-DFY 275
Query 591 KPNLDQIGFQELLSQEMHGRAWRVNANYKTTDFSVGKQPAWTEYTTTVNETYGDFAAGEP 650
P +G QE+ ++E++ +N + + + G P + EY + NE +GDF
Sbjct 276 FPEFAHLGEQEIKNEELY-----LNESDAANEGTFGYTPRYAEYKYSQNEVHGDFRGN-- 328
Query 651 LEYMAFNRVYDVANDPKLKDATTYIDPQIFNKAFANSNLDAKNFWIQIGFDVIGRRVKSA 710
+ + NR++ P L TT+++ N+ FA + +W+QI D+ R+
Sbjct 329 MAFWHLNRIF--KEKPNLN--TTFVECNPSNRVFATAETSDDKYWVQIYQDIKALRLMPK 384
Query 711 REIPNL 716
P L
Sbjct 385 YGTPML 390
>gi|649555287|gb|KDS61824.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649560568|gb|KDS66876.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649561020|gb|KDS67307.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649562724|gb|KDS68908.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 6]
Length=541
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/246 (29%), Positives = 113/246 (46%), Gaps = 20/246 (8%)
Query 473 LNRIAVSGGSYRDWQEAVFGVRVSRA-AESPIYVGGYASEIVFDEVVSTAAFESGETGQE 531
R A SG Y + + FGVR S A + P ++GG + I EV+ T++ +S
Sbjct 314 FERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSEVLQTSSTDS----TS 369
Query 532 PLGSLAGRGRETSKRGGKNIKIRCEEPSLIMILGSIVPRVDYSQG-NKWWTRVDTMNDFH 590
P ++AG G G EE IM + SI PR Y QG K + + D M DF+
Sbjct 370 PQANMAGHGISAGVNHG--FTRYFEEHGYIMGIMSIRPRTGYQQGVPKDFRKFDNM-DFY 426
Query 591 KPNLDQIGFQELLSQEMHGRAWRVNANYKTTDFSVGKQPAWTEYTTTVNETYGDFAAGEP 650
P +G QE+ ++E++ +N + + + G P + EY + NE +GDF
Sbjct 427 FPEFAHLGEQEIKNEELY-----LNESDAANEGTFGYTPRYAEYKYSQNEVHGDFRGN-- 479
Query 651 LEYMAFNRVYDVANDPKLKDATTYIDPQIFNKAFANSNLDAKNFWIQIGFDVIGRRVKSA 710
+ + NR++ P L TT+++ N+ FA + +W+QI D+ R+
Sbjct 480 MAFWHLNRIF--KEKPNLN--TTFVECNPSNRVFATAETSDDKYWVQIYQDIKALRLMPK 535
Query 711 REIPNL 716
P L
Sbjct 536 YGTPML 541
>gi|494610271|ref|WP_007368517.1| capsid protein [Prevotella multiformis]
gi|324988543|gb|EGC20506.1| putative capsid protein (F protein) [Prevotella multiformis DSM
16608]
Length=531
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 117/272 (43%), Gaps = 44/272 (16%)
Query 480 GGSYRDWQEAVFGVRV--SRAAESPIYVGGYASEIVFDEVVSTAAFESGETGQEPLGSLA 537
G Y EA FG RV SRA ++ ++GG+ + +V EVV+ + F+ G LG L
Sbjct 269 GLDYSSQIEAHFGFRVPESRAGDA-RFIGGFDNPVVISEVVNQSEFDRGADESPCLGDLG 327
Query 538 GRGRETSKRGGKNIKIRCEEPSLIMILGSIVPRVDYSQGNKWWTRVDTMN------DFHK 591
G+G +I +E +IM + S+VP+ +Y+ T D N DF +
Sbjct 328 GKG--VGSLNSSSIDFDVKEHGIIMCIYSVVPQTEYNG-----TYFDPFNRKLRREDFFQ 380
Query 592 PNLDQIGFQELLSQEMHG------------RAWRVNANYKTTDFS-----VGKQPAWTEY 634
P +G+Q +++ ++ + R+ A Y + +G Q + EY
Sbjct 381 PEFADLGYQPVVTSDLISTYLDNPVPDGPEKQKRLAAGYPLSSIEANNRLLGWQVRYNEY 440
Query 635 TTTVNETYGDFAAGEPLEYMAFNRVYDVANDPKLKD----------ATTYIDPQIFNKAF 684
T+ + +G+F +G L Y R YD D K D A Y++P I N F
Sbjct 441 KTSRDLVFGEFESGLSLSYWCSPR-YDFGFDGKAGDKKLVNSPWSPAHFYVNPSILNTIF 499
Query 685 ANSNLDAKNFWIQIGFDVIGRRVKSAREIPNL 716
S + A +F + FDV R S + L
Sbjct 500 LVSAVKADHFLVNSFFDVKAVRPMSVSGLAGL 531
>gi|547920049|ref|WP_022322420.1| capsid protein VP1 [Parabacteroides merdae CAG:48]
gi|524592961|emb|CDD13573.1| capsid protein VP1 [Parabacteroides merdae CAG:48]
Length=553
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/246 (30%), Positives = 115/246 (47%), Gaps = 20/246 (8%)
Query 473 LNRIAVSGGSYRDWQEAVFGVRVSRA-AESPIYVGGYASEIVFDEVVSTAAFESGETGQE 531
R A G Y + + FGVR S A + P ++GG I EV+ T++ + ET
Sbjct 326 FERNARGGSRYIEQILSHFGVRSSDARLQRPQFLGGGRMPISVSEVLQTSS--TDET--S 381
Query 532 PLGSLAGRGRETSKRGGKNIKIRCEEPSLIMILGSIVPRVDYSQG-NKWWTRVDTMNDFH 590
P ++AG G G K EE I+ + SI PR Y QG + +T+ D M DF+
Sbjct 382 PQANMAGHGISAGINNG--FKHYFEEHGYIIGIMSITPRSGYQQGVPRDFTKFDNM-DFY 438
Query 591 KPNLDQIGFQELLSQEMHGRAWRVNANYKTTDFSVGKQPAWTEYTTTVNETYGDFAAGEP 650
P + QE+ +QE+ V+ + + + G P + EY +E +GDF
Sbjct 439 FPEFAHLSEQEIKNQELF-----VSEDAAYNNGTFGYTPRYAEYKYHPSEAHGDFRGN-- 491
Query 651 LEYMAFNRVYDVANDPKLKDATTYIDPQIFNKAFANSNLDAKNFWIQIGFDVIGRRVKSA 710
L + NR+++ + P L TT+++ + N+ FA S + FW+Q+ DV R+
Sbjct 492 LSFWHLNRIFE--DKPNLN--TTFVECKPSNRVFATSETEDDKFWVQMYQDVKALRLMPK 547
Query 711 REIPNL 716
P L
Sbjct 548 YGTPML 553
>gi|494308783|ref|WP_007173938.1| hypothetical protein [Prevotella bergensis]
gi|270333035|gb|EFA43821.1| putative capsid protein (F protein) [Prevotella bergensis DSM
17361]
Length=553
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/259 (26%), Positives = 120/259 (46%), Gaps = 30/259 (12%)
Query 440 DGTN--GINEITSVDVTSGLLTMDALILQKKVYDMLNRIAVSGGSYRDWQEAVFGVRVSR 497
DG+N +N D + G ++ +L V +L+ +G +++D A +GV +
Sbjct 276 DGSNFTRVNFGVDTDSSEGDFSVSSLRAAFAVDKLLSVTMRAGKTFQDQMRAHYGVEIPD 335
Query 498 AAESPI-YVGGYASEIVFDEVVSTAAFESGETGQEP--LGSLAGRGRETSKRGGKNIKIR 554
+ + + Y+GG+ S++ +V T+ + E E LG +AG+G + G I
Sbjct 336 SRDGRVNYLGGFDSDMQVSDVTQTSGTTATEYKPEAGYLGRVAGKG---TGSGRGRIVFD 392
Query 555 CEEPSLIMILGSIVPRVDYSQGNKWWTRVDTM------NDFHKPNLDQIGFQELLSQEMH 608
+E ++M + S+VP++ Y TR+D M D+ P + +G Q L S +
Sbjct 393 AKEHGVLMCIYSLVPQIQYD-----CTRLDPMVDKLDRFDYFTPEFENLGMQPLNSSYI- 446
Query 609 GRAWRVNANYKTTDFS---VGKQPAWTEYTTTVNETYGDFAAGEPLEYMAFNRVYDVAND 665
+++ TTD +G QP ++EY T ++ +G FA + L + +R
Sbjct 447 -------SSFCTTDPKNPVLGYQPRYSEYKTALDVNHGQFAQSDALSSWSVSRFRRWTTF 499
Query 666 PKLKDATTYIDPQIFNKAF 684
P+L+ A IDP N F
Sbjct 500 PQLEIADFKIDPGCLNSIF 518
>gi|609718276|emb|CDN73650.1| conserved hypothetical protein [Elizabethkingia anophelis]
Length=537
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 118/253 (47%), Gaps = 16/253 (6%)
Query 459 TMDALILQKKVYDMLNRIAVSGGSYRDWQEAVFGVRVSRA-AESPIYVGGYASEIVFDEV 517
T++ L K+ + L + A +G Y + + FGV+ S + P ++GG S I+ EV
Sbjct 290 TVNDLRRAFKLQEWLEKNARAGSRYAESILSFFGVKTSDGRLQRPEFLGGNKSPIMISEV 349
Query 518 VSTAAFESGETGQEPLGSLAGRGRETSKRGGKNIKIRCEEPSLIMILGSIVPRVDYSQG- 576
+ +A +S P G++AG G K GG EE ++ L S++P+ YSQG
Sbjct 350 LQQSATDS----TTPQGNMAGHGIGIGKDGG--FSRFFEEHGYVIGLMSVIPKTSYSQGI 403
Query 577 NKWWTRVDTMNDFHKPNLDQIGFQELLSQEMHGRAWRVNANYKTTDFSVGKQPAWTEYTT 636
+ +++ D D+ P + IG Q + ++E+ + N + ++ G P ++EY
Sbjct 404 PRHFSKSDKF-DYFWPQFEHIGEQPVYNKEIFAK----NIDAFDSEAVFGYLPRYSEYKF 458
Query 637 TVNETYGDFAAGEPLEYMAFNRVYDVANDPKLKDATTYIDPQIFNKAFANSNLDAKNFWI 696
+ + +GDF + L + R++D P L + D ++ FA + D F+
Sbjct 459 SPSTVHGDFK--DDLYFWHLGRIFDTDKPPVLNQSFIECDKNALSRIFAVED-DTDKFYC 515
Query 697 QIGFDVIGRRVKS 709
+ + +R S
Sbjct 516 HLYQKITAKRKMS 528
>gi|494306153|ref|WP_007173049.1| hypothetical protein [Prevotella bergensis]
gi|270333881|gb|EFA44667.1| putative capsid protein (F protein) [Prevotella bergensis DSM
17361]
Length=519
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 65/252 (26%), Positives = 115/252 (46%), Gaps = 28/252 (11%)
Query 445 INEITSVDVTSGLLTMDALILQKKVYDMLNRIAVSGGSYRDWQEAVFGVRVSRAAESPI- 503
+N VD G ++ +L V +L+ +G +++D A +GV + + + +
Sbjct 249 LNFPVDVDNNLGYFSVSSLRSAFAVDKLLSVTMRAGKTFQDQMRAHYGVEIPDSRDGRVN 308
Query 504 YVGGYASEIVFDEVVSTAAFESGETGQEP--LGSLAGRGRETSKRGGKNIKIRCEEPSLI 561
Y+GG+ S++ +V T+ + E E LG +AG+G + G I +E ++
Sbjct 309 YLGGFDSDLQVSDVTQTSGTTATEYKPEAGYLGRIAGKG---TGSGRGRIVFDAKEHGVL 365
Query 562 MILGSIVPRVDYSQGNKWWTRVDTM------NDFHKPNLDQIGFQELLSQEMHGRAWRVN 615
M + S+VP++ Y TR+D M DF P + +G Q L S +
Sbjct 366 MCIYSLVPQIQYD-----CTRLDPMVDKLDRFDFFTPEFENLGMQPLNSSYI-------- 412
Query 616 ANYKTTDFS---VGKQPAWTEYTTTVNETYGDFAAGEPLEYMAFNRVYDVANDPKLKDAT 672
+++ T D +G QP ++EY T ++ +G FA + L + +R P+L+ A
Sbjct 413 SSFCTPDPKNPVLGYQPRYSEYKTALDINHGQFAQNDALSSWSVSRFRRWTTFPQLEIAD 472
Query 673 TYIDPQIFNKAF 684
IDP N F
Sbjct 473 FKIDPGCLNSVF 484
>gi|496521299|ref|WP_009229582.1| capsid protein [Prevotella sp. oral taxon 317]
gi|288330570|gb|EFC69154.1| putative capsid protein (F protein) [Prevotella sp. oral taxon
317 str. F0108]
Length=541
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 110/257 (43%), Gaps = 28/257 (11%)
Query 440 DGTNGINEITSVDVTSGLLTMDALILQKKVYDMLNRIAVSGGSYRDWQEAVFGVRVSRAA 499
DG + + S DV + A L K +L+ +G +Y + EA FGV VS
Sbjct 268 DGNSAKLNMASPDVLNVSAIRSAFALDK----LLSISMRAGKTYAEQIEAHFGVTVSEGR 323
Query 500 ESPIY-VGGYASEIVFDEVVSTAAFESGETGQEPLGSLAGR-GRETSKRGGKN---IKIR 554
+ +Y +GG+ S + +V T+ + + LAG G+ T K G I+
Sbjct 324 DGQVYYLGGFDSNVQVGDVTQTSGTTNPNVSEVGNAKLAGYLGKITGKGTGSGYGEIQFD 383
Query 555 CEEPSLIMILGSIVPRVDYSQGNKWWTRVD------TMNDFHKPNLDQIGFQELLSQEMH 608
+EP ++M + S+VP + Y R+D T D+ P + +G Q ++
Sbjct 384 AKEPGVLMCIYSVVPAMQYD-----CMRLDPFVAKQTRGDYFIPEFENLGMQPIVPA--- 435
Query 609 GRAWRVNANYKTTDFSVGKQPAWTEYTTTVNETYGDFAAGEPLEYMAFNRVYDVANDPKL 668
V+ N + D S G QP ++EY T + +G FA GEPL Y + R
Sbjct 436 ----FVSLN-RAKDNSYGWQPRYSEYKTAFDINHGQFANGEPLSYWSIARARGSDTLNTF 490
Query 669 KDATTYIDPQIFNKAFA 685
A I+P + FA
Sbjct 491 NVAALKINPHWLDSVFA 507
Lambda K H a alpha
0.316 0.134 0.390 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5553829103760