bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-40_CDS_annotation_glimmer3.pl_2_2
Length=278
Score E
Sequences producing significant alignments: (Bits) Value
gi|575096057|emb|CDL66940.1| unnamed protein product 186 1e-53
gi|575094486|emb|CDL65860.1| unnamed protein product 139 5e-35
gi|575094568|emb|CDL65929.1| unnamed protein product 130 5e-32
gi|575094545|emb|CDL65905.1| unnamed protein product 128 5e-31
gi|393707865|ref|YP_004732987.1| structural protein VP2 62.0 3e-08
gi|575094495|emb|CDL65861.1| unnamed protein product 56.6 4e-06
gi|12085140|ref|NP_073542.1| minor capsid protein 55.1 6e-06
gi|547839281|ref|WP_022246923.1| putative minor capsid protein 54.7 1e-05
gi|575094430|emb|CDL65810.1| unnamed protein product 53.9 3e-05
gi|568290031|gb|ETN78178.1| hypothetical protein NECAME_18237 50.4 8e-05
>gi|575096057|emb|CDL66940.1| unnamed protein product [uncultured bacterium]
Length=275
Score = 186 bits (473), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/154 (74%), Positives = 129/154 (84%), Gaps = 0/154 (0%)
Query 30 ASENTAKSAQMASEQRDWQERQNALAMQFNAQEAAKSRSWQEYMSNTAHQREIRDLKAAG 89
A N+A +A+ A QRDWQE QNA AMQFN+ EAAK+R WQE MSNTAHQRE++DL AAG
Sbjct 32 AQANSAWNAEQAEIQRDWQEAQNAKAMQFNSMEAAKNRKWQEMMSNTAHQREVKDLMAAG 91
Query 90 LNPVLSAMggngaavtsgatasgvtsagaKGEVDTSANAALVQMLGSVLSAQTQLQTANV 149
LNPVLSAM GNGAAV SGATASGVTSAGAKGE DTS + A+ +LGS+LSA T +Q ANV
Sbjct 92 LNPVLSAMNGNGAAVGSGATASGVTSAGAKGEADTSTSGAIANLLGSILSASTAIQAANV 151
Query 150 NARTQEAVADKYTAMEEIVANISRDATLGSAGIH 183
NARTQEAVADKYTAM +IVA I++ ATLGSAGIH
Sbjct 152 NARTQEAVADKYTAMSQIVAEINKAATLGSAGIH 185
>gi|575094486|emb|CDL65860.1| unnamed protein product [uncultured bacterium]
Length=344
Score = 139 bits (350), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/165 (56%), Positives = 116/165 (70%), Gaps = 1/165 (1%)
Query 19 LDSALSRITRTASENTAKSAQMASEQRDWQERQNALAMQFNAQEAAKSRSWQEYMSNTAH 78
LD SR+ + N A SA A +Q D+Q Q AL QFN EA SR WQE MSNTAH
Sbjct 61 LDDYFSRLQSITASNNAWSAAQAQKQMDFQASQGALVRQFNHDEAELSRLWQERMSNTAH 120
Query 79 QREIRDLKAAGLNPVLSAMggngaavtsgatasg-vtsagaKGEVDTSANAALVQMLGSV 137
QREI+DL+AAGLNPVLSAMGG+GA VTSG+TASG +G+KG+ DTS ALV +LGS
Sbjct 121 QREIKDLQAAGLNPVLSAMGGSGAPVTSGSTASGYSPPSGSKGDTDTSLAGALVSLLGSS 180
Query 138 LSAQTQLQTANVNARTQEAVADKYTAMEEIVANISRDATLGSAGI 182
+ AQ + ++ARTQE+VADKYTAM ++VA I ++ TL ++ I
Sbjct 181 MMAQASMANTAMSARTQESVADKYTAMSKLVAEIQQETTLSASTI 225
>gi|575094568|emb|CDL65929.1| unnamed protein product [uncultured bacterium]
Length=310
Score = 130 bits (327), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 93/166 (56%), Positives = 123/166 (74%), Gaps = 7/166 (4%)
Query 19 LDSALSRITRT-------ASENTAKSAQMASEQRDWQERQNALAMQFNAQEAAKSRSWQE 71
L + L++IT++ + +NTA+S Q A R WQE QN +AMQFNA EA K+R+WQE
Sbjct 32 LANQLTKITQSIDDVIGLSEKNTARSVQEAESLRTWQEEQNRIAMQFNAAEAEKNRNWQE 91
Query 72 YMSNTAHQREIRDLKAAGLNPVLSAMggngaavtsgatasgvtsagaKGEVDTSANAALV 131
MSNTAHQRE+ DL AAGLNPVLSA GGNGAAVTSGATASGVTS+GAKG+VDTSA++A+V
Sbjct 92 IMSNTAHQREVNDLMAAGLNPVLSAGGGNGAAVTSGATASGVTSSGAKGDVDTSASSAVV 151
Query 132 QMLGSVLSAQTQLQTANVNARTQEAVADKYTAMEEIVANISRDATL 177
+LGS+LS+ T + AN +A T A +K + +++A+ + + L
Sbjct 152 GILGSMLSSLTNIANANTSAITSMANTEKLGQINQLIAHANNENAL 197
>gi|575094545|emb|CDL65905.1| unnamed protein product [uncultured bacterium]
Length=325
Score = 128 bits (321), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 116/235 (49%), Positives = 161/235 (69%), Gaps = 0/235 (0%)
Query 2 TTGKDAAQVQSVPAVGNLDSALSRITRTASENTAKSAQMASEQRDWQERQNALAMQFNAQ 61
T+ + A + S P +G + L +ITR AS+N+A +A A+ R+WQ++QN +AMQF++
Sbjct 3 TSAQSFANIPSAPQLGQYSNYLGQITRMASDNSAFNASQAAANRNWQQQQNNIAMQFSSA 62
Query 62 EAAKSRSWQEYMSNTAHQREIRDLKAAGLNPVLSAMggngaavtsgatasgvtsagaKGE 121
EAAK+R WQ YMSNTAHQRE+ DLKAAGLNPVLSAMGGNGAAVTSGATA G TS+G +
Sbjct 63 EAAKNRDWQSYMSNTAHQREVADLKAAGLNPVLSAMGGNGAAVTSGATAQGYTSSGGQAS 122
Query 122 VDTSANAALVQMLGSVLSAQTQLQTANVNARTQEAVADKYTAMEEIVANISRDATLGSAG 181
DTSA AALV +LGS+L+AQT + NA +VADKYT+ A++ T SA
Sbjct 123 ADTSATAALVGLLGSLLNAQTSIANTATNAVANLSVADKYTSATRYAADVGYAGTSYSAN 182
Query 182 IHagatryaadtsaaasryfaDKNYEGTKYSSDKHYQGTMYSANKSYEGTKYSSD 236
+ A A+R+A++ + AAS+Y +D + +KY+SD+ Y + +++ KY+ D
Sbjct 183 VAAYASRFASNNALAASKYASDNSRAASKYASDQSYLASKFASILQSNTAKYNID 237
>gi|393707865|ref|YP_004732987.1| structural protein VP2 [Microviridae phi-CA82]
gi|311336637|gb|ADP89808.1| structural protein VP2 [Microviridae phi-CA82]
Length=234
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 39/235 (17%)
Query 41 ASEQRDWQERQNALAMQFNAQEAAKSRSWQEYMSNTAHQREIRDLKAAGLNPVLSAMggn 100
A +Q W Q + QFNAQEA K+R WQE MSNTA QR+++D + AGLNP+ +
Sbjct 12 ADKQNKWNAEQTEKSNQFNAQEAQKNRDWQEQMSNTALQRKMQDAEKAGLNPIFA----- 66
Query 101 gaavtsgatasgvtsagaKGEVDTS---ANAALVQMLGSVLSAQTQLQTANVNARTQEAV 157
A+G TS A+A + +++A T A R Q +
Sbjct 67 ---------------LNAQGASTTSGATASADSSKPATDIINAMTSYTNAQEQNRMQREL 111
Query 158 ADKYTAMEEIVANISRDATLGSAGIHagatryaadtsaaasryfaDKNYEGTKYSSDKHY 217
A + ++ +A + A L A + A A SA ++Y +D+ Y
Sbjct 112 ALQENRVKLQIAQMQMQAELQRARLATNAQMATAYASA-----------SASRYGADRSY 160
Query 218 QGTMYSANKSYEGTKYSSDNSVR----NPSSAVGYAREIGKVAVNIFSDLFG-WD 267
+ YS++ SY+ + ++N++ NP+ + +E + N + F WD
Sbjct 161 NASRYSSDTSYKNVQSQNENNILTKGVNPTGVLYNNKEFQRRTNNAINKGFNLWD 215
>gi|575094495|emb|CDL65861.1| unnamed protein product [uncultured bacterium]
Length=266
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/41 (61%), Positives = 33/41 (80%), Gaps = 0/41 (0%)
Query 56 MQFNAQEAAKSRSWQEYMSNTAHQREIRDLKAAGLNPVLSA 96
+ +N Q A + ++QE MS+TAHQRE++DL AAGLNPVLSA
Sbjct 64 LNYNTQSAREQMAFQERMSSTAHQREVKDLIAAGLNPVLSA 104
>gi|12085140|ref|NP_073542.1| minor capsid protein [Bdellovibrio phage phiMH2K]
gi|75089169|sp|Q9G055.1|H_BPPHM RecName: Full=Minor spike protein H; AltName: Full=H protein;
AltName: Full=Pilot protein; AltName: Full=Protein VP2; Short=VP2
[Bdellovibrio phage phiMH2K]
gi|12017988|gb|AAG45344.1|AF306496_5 Vp2 [Bdellovibrio phage phiMH2K]
Length=199
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 34/50 (68%), Gaps = 7/50 (14%)
Query 47 WQERQNALAMQFNAQEAAKSRSWQEYMSNTAHQREIRDLKAAGLNPVLSA 96
WQ R+N EAA++R WQE MSN+AHQRE DL+ AGLN +L+A
Sbjct 37 WQTRENQA-------EAARNRKWQEQMSNSAHQREANDLQTAGLNRLLTA 79
>gi|547839281|ref|WP_022246923.1| putative minor capsid protein [Clostridium sp. CAG:306]
gi|524476581|emb|CDC18646.1| putative minor capsid protein [Clostridium sp. CAG:306]
Length=236
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/29 (76%), Positives = 28/29 (97%), Gaps = 0/29 (0%)
Query 69 WQEYMSNTAHQREIRDLKAAGLNPVLSAM 97
+QE MS+TAHQRE++DL+AAGLNP+LSAM
Sbjct 41 FQERMSSTAHQREVKDLRAAGLNPILSAM 69
>gi|575094430|emb|CDL65810.1| unnamed protein product [uncultured bacterium]
Length=274
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/41 (49%), Positives = 33/41 (80%), Gaps = 0/41 (0%)
Query 55 AMQFNAQEAAKSRSWQEYMSNTAHQREIRDLKAAGLNPVLS 95
AMQ+N+ +A + W+E+MSNT++QR + D++ AGLNP+L+
Sbjct 120 AMQYNSAQAMRQMKWEEHMSNTSYQRAMEDMRKAGLNPILA 160
>gi|568290031|gb|ETN78178.1| hypothetical protein NECAME_18237 [Necator americanus]
Length=112
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/26 (81%), Positives = 23/26 (88%), Gaps = 0/26 (0%)
Query 68 SWQEYMSNTAHQREIRDLKAAGLNPV 93
+WQE MSNTAHQRE DLKAAGLNP+
Sbjct 43 AWQERMSNTAHQREQADLKAAGLNPI 68
Lambda K H a alpha
0.309 0.121 0.329 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1373811661332