bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-42_CDS_annotation_glimmer3.pl_2_2
Length=496
Score E
Sequences producing significant alignments: (Bits) Value
gi|444298142|dbj|GAC77768.1| major capsid protein 56.2 2e-05
gi|547312923|ref|WP_022044635.1| putative uncharacterized protein 55.8 3e-05
gi|639237429|ref|WP_024568106.1| hypothetical protein 53.5 3e-04
gi|649557305|gb|KDS63784.1| capsid family protein 51.2 6e-04
gi|444298000|dbj|GAC77839.1| major capsid protein 52.0 7e-04
gi|609718276|emb|CDN73650.1| conserved hypothetical protein 51.6 0.001
gi|444297994|dbj|GAC77842.1| major capsid protein 49.3 0.001
gi|649569140|gb|KDS75238.1| capsid family protein 50.8 0.001
gi|492501782|ref|WP_005867318.1| hypothetical protein 51.2 0.001
gi|649555287|gb|KDS61824.1| capsid family protein 50.8 0.002
>gi|444298142|dbj|GAC77768.1| major capsid protein [uncultured marine virus]
Length=299
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (48%), Gaps = 9/153 (6%)
Query 224 VSMSGVTTIPQLAIASRLQEYKDLLGAGGNRYSDWLDTF-FASKIEHVDRPKLLFSASQT 282
+S +G I L A LQ Y++ G R++++L +S + RP+++ +
Sbjct 113 LSQAGAININDLREAFALQRYQEARNLYGARFTEYLRYLGISSSXGRLQRPEMISTGKSN 172
Query 283 INVQVIMNQAGPNNFSGLDISGPLGQQGG-AIAFNEQLGRRQSYYFSEPGYLIDMLSIRP 341
IN ++N GP SG+D PLG+ GG IA + R Y+ E G++I ++S+RP
Sbjct 173 INFSEVLNTTGP---SGVD-DHPLGEMGGHGIAGVK--SNRARYFCEEHGHIISLMSVRP 226
Query 342 -VYYWSFVKPDYLNYLGPDYFNPIYNDIGYQDV 373
Y + + DY+ IG ++V
Sbjct 227 KTIYMTTQHKQFDRESKEDYWQKELQAIGMEEV 259
>gi|547312923|ref|WP_022044635.1| putative uncharacterized protein [Alistipes finegoldii CAG:68]
gi|524208404|emb|CCZ76639.1| putative uncharacterized protein [Alistipes finegoldii CAG:68]
Length=338
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/193 (30%), Positives = 83/193 (43%), Gaps = 26/193 (13%)
Query 205 VPSNPDRFSRLIPTGSTSAVSMSGV------------TTIPQLAIASRLQEYKDLLGAGG 252
VP +PD F +I GS+ AV + + +P+L + +++Q + D L G
Sbjct 15 VPYSPDLFGNIIKQGSSPAVEIEVMNALDLNISTGFSVAVPELRLRTKIQNWMDRLFVSG 74
Query 253 NRYSDWLDTFFASKIE--HVDRPKLLFSASQTINVQVIMNQAGPNNFSGLDISGPLGQQG 310
R D T + +K +V++P L +IN + A + SG D + LGQ
Sbjct 75 GRVGDVFRTLWGTKSSAIYVNKPDFLGVWQASINPSNVRAMAN-GSASGEDAN--LGQLA 131
Query 311 GAI----AFNEQLGRRQSYYFSEPG--YLIDMLSIRPVYYWSFVKPDYLNYLGPDYFNPI 364
+ F+ G YY EPG LI ML P Y + PD + D FNP
Sbjct 132 ACVDRYCDFSGHSG--IDYYAKEPGTFMLITMLVPEPAYSQG-LHPDLASISFGDDFNPE 188
Query 365 YNDIGYQDVSSAR 377
N IG+Q V R
Sbjct 189 LNGIGFQLVPRHR 201
>gi|639237429|ref|WP_024568106.1| hypothetical protein [Elizabethkingia anophelis]
Length=546
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/188 (27%), Positives = 87/188 (46%), Gaps = 16/188 (9%)
Query 230 TTIPQLAIASRLQEYKDLLGAGGNRYSDWLDTFFASKIE--HVDRPKLLFSASQTINVQV 287
+TI L A +LQE+ + G+RY++ + +FF K + RP+ L I +
Sbjct 298 STINDLRRAFKLQEWLEKNARAGSRYAESILSFFGVKTSDGRLQRPEFLGGNKTPILISE 357
Query 288 IMNQAGPNNFSGLDISGPLGQQGG-AIAFNEQLGRRQSYYFSEPGYLIDMLSIRPVYYWS 346
++ Q S D + P G G I+ ++ G S +F E GY+I ++S+ P +S
Sbjct 358 VLQQ------SSTDSTTPQGNMAGHGISVGKEGGF--SKFFEEHGYVIGLMSVIPKTSYS 409
Query 347 FVKPDYLNYLGP-DYFNPIYNDIGYQDVSSARI----VFNGNAGATSASEPCFNEFRASY 401
P + + DYF P + IG Q V + I V + ++G P ++E++ S
Sbjct 410 QGIPRHFSKFDKFDYFWPQFEHIGEQPVYNKEIFAKNVGDYDSGGVFGYVPRYSEYKYSP 469
Query 402 DEVLGQLQ 409
+ G +
Sbjct 470 STIHGDFK 477
>gi|649557305|gb|KDS63784.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649559156|gb|KDS65543.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 6]
Length=245
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 82/188 (44%), Gaps = 19/188 (10%)
Query 232 IPQLAIASRLQEYKDLLGAGGNRYSDWLDTFFA--SKIEHVDRPKLLFSASQTINVQVIM 289
I + ++ LQ + + G+RY + + + F S + RP+ L I+V ++
Sbjct 5 INDIRTSNALQRWFERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSEVL 64
Query 290 NQAGPNNFSGLDISGP---LGQQGGAIAFNEQLGRRQSYYFSEPGYLIDMLSIRP-VYYW 345
S D + P + G + N R YF E GY++ ++SIRP Y
Sbjct 65 QT------SSTDSTSPQANMAGHGISAGVNHGFTR----YFEEHGYIMGIMSIRPRTGYQ 114
Query 346 SFVKPDYLNYLGPDYFNPIYNDIGYQDVSSARIVFNGNAGATSAS---EPCFNEFRASYD 402
V D+ + D++ P + +G Q++ + + N + A + P + E++ S +
Sbjct 115 QGVPKDFRKFDNMDFYFPEFAHLGEQEIKNEELYLNESDAANEGTFGYTPRYAEYKYSQN 174
Query 403 EVLGQLQG 410
EV G +G
Sbjct 175 EVHGDFRG 182
>gi|444298000|dbj|GAC77839.1| major capsid protein [uncultured marine virus]
Length=480
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 107/273 (39%), Gaps = 40/273 (15%)
Query 231 TIPQLAIASRLQEYKDLLGAGGNRYSDWLDTFFAS-KIEHVDRPKLLFSASQTINVQVIM 289
TI + A +Q Y++ G+RY+++L + K + RP+ + + IN ++
Sbjct 237 TINDIRRAFAIQRYQEARSRYGSRYTEYLRYLGVNPKDARLQRPEYMGGGTTQINFSEVL 296
Query 290 NQA----GPNNFSGLDISGPLGQQGGAIAFNEQLGRRQSYYFSEPGYLIDMLSIRP-VYY 344
+ G + S + G G A RR Y E GY+I MLS+RP Y
Sbjct 297 QTSPEIPGEDQVSQFGVGDMYGH--GIAAMRSNKYRR---YIEEHGYIISMLSVRPKTMY 351
Query 345 WSFVKPDYLNYLGPDYFNPIYNDIGYQDVSSARIVFNGNAGA-TSASEPCFNEFRASYDE 403
+ + +L DY+ IG Q++ + I + AG T ++E+R +
Sbjct 352 TNGIHRSWLRLTKEDYYQKELEHIGQQEIMNNEIYADEGAGTETFGYNDRYSEYRETPSH 411
Query 404 VLGQLQGYPMPEVDGTSYIPLYAYWVQQRTSKLSDGSGSLPESHYYPIL---FTDMNQVN 460
V + +G + YW R E P+L F D +
Sbjct 412 VSAEFRG-------------ILNYWHMAR------------EFEAPPVLNQSFVDCDATK 446
Query 461 SPFASKVEDNFFVNMSYAVQKKSLVNKTFATRL 493
+ +D ++ + + + + L+++ A R+
Sbjct 447 RIHNEQTQDALWIMIQHKMVARRLLSRNAAPRI 479
>gi|609718276|emb|CDN73650.1| conserved hypothetical protein [Elizabethkingia anophelis]
Length=537
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 85/190 (45%), Gaps = 18/190 (9%)
Query 229 VTTIPQLAIASRLQEYKDLLGAGGNRYSDWLDTFFASKIE--HVDRPKLLFSASQTINVQ 286
V+T+ L A +LQE+ + G+RY++ + +FF K + RP+ L I +
Sbjct 288 VSTVNDLRRAFKLQEWLEKNARAGSRYAESILSFFGVKTSDGRLQRPEFLGGNKSPIMIS 347
Query 287 VIMNQAGPNNFSGLDISGPLGQQGG-AIAFNEQLGRRQSYYFSEPGYLIDMLSIRPVYYW 345
++ Q S D + P G G I + G S +F E GY+I ++S+ P +
Sbjct 348 EVLQQ------SATDSTTPQGNMAGHGIGIGKDGGF--SRFFEEHGYVIGLMSVIPKTSY 399
Query 346 SFVKPDYLNYLGP-DYFNPIYNDIGYQDVSSARIVFNGNAGATSASE-----PCFNEFRA 399
S P + + DYF P + IG Q V + I F N A + P ++E++
Sbjct 400 SQGIPRHFSKSDKFDYFWPQFEHIGEQPVYNKEI-FAKNIDAFDSEAVFGYLPRYSEYKF 458
Query 400 SYDEVLGQLQ 409
S V G +
Sbjct 459 SPSTVHGDFK 468
>gi|444297994|dbj|GAC77842.1| major capsid protein, partial [uncultured marine virus]
Length=183
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/164 (27%), Positives = 72/164 (44%), Gaps = 12/164 (7%)
Query 220 STSAVSMSGVT--TIPQLAIASRLQEYKDLLGAGGNRYSDWLDTFFASKIEHVD--RPKL 275
ST +SG T TI + IA +Q + GG RY + + F + + + RP+L
Sbjct 25 STGTADLSGATSATINDMRIAVTMQHLLERDARGGTRYREQVLAHFGVQTDDIRLMRPEL 84
Query 276 LFSASQTINVQVIMNQAGPNNFSGLDISGPLGQQGGAIAFNEQLGRRQSYYFSEPGYLID 335
L + S T+N+ + A GP+ + A A +GR + F+E G ++
Sbjct 85 LATGSTTVNLSPVATTAAFG-------VGPVLGELAAFATASAVGRGWTKRFNEHGIVMG 137
Query 336 MLSIR-PVYYWSFVKPDYLNYLGPDYFNPIYNDIGYQDVSSARI 378
+ SIR + Y + + DY+ P + +G Q V S I
Sbjct 138 LCSIRAELSYQQGMARRFARTSRLDYYWPELSHLGEQVVQSREI 181
>gi|649569140|gb|KDS75238.1| capsid family protein, partial [Parabacteroides distasonis str.
3999B T(B) 6]
Length=390
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 82/188 (44%), Gaps = 19/188 (10%)
Query 232 IPQLAIASRLQEYKDLLGAGGNRYSDWLDTFFA--SKIEHVDRPKLLFSASQTINVQVIM 289
I + ++ LQ + + G+RY + + + F S + RP+ L I+V ++
Sbjct 150 INDIRTSNALQRWFERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSEVL 209
Query 290 NQAGPNNFSGLDISGP---LGQQGGAIAFNEQLGRRQSYYFSEPGYLIDMLSIRP-VYYW 345
S D + P + G + N R YF E GY++ ++SIRP Y
Sbjct 210 QT------SSTDSTSPQANMAGHGISAGVNHGFTR----YFEEHGYIMGIMSIRPRTGYQ 259
Query 346 SFVKPDYLNYLGPDYFNPIYNDIGYQDVSSARIVFNGNAGATSAS---EPCFNEFRASYD 402
V D+ + D++ P + +G Q++ + + N + A + P + E++ S +
Sbjct 260 QGVPKDFRKFDNMDFYFPEFAHLGEQEIKNEELYLNESDAANEGTFGYTPRYAEYKYSQN 319
Query 403 EVLGQLQG 410
EV G +G
Sbjct 320 EVHGDFRG 327
>gi|492501782|ref|WP_005867318.1| hypothetical protein [Parabacteroides distasonis]
gi|409230408|gb|EKN23272.1| hypothetical protein HMPREF1059_03257 [Parabacteroides distasonis
CL09T03C24]
Length=538
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 19/190 (10%)
Query 230 TTIPQLAIASRLQEYKDLLGAGGNRYSDWLDTFFA--SKIEHVDRPKLLFSASQTINVQV 287
+I L ++ LQ + + G+RY + + + F S + RP+ L I+V
Sbjct 296 VSINDLRTSNALQRWFERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSE 355
Query 288 IMNQAGPNNFSGLDISGP---LGQQGGAIAFNEQLGRRQSYYFSEPGYLIDMLSIRP-VY 343
++ S D + P + G + N R YF E GY+I ++SIRP
Sbjct 356 VLQT------SATDSTSPQANMAGHGISAGVNHGFKR----YFEEHGYIIGIMSIRPRTG 405
Query 344 YWSFVKPDYLNYLGPDYFNPIYNDIGYQDVSSARIVFNGNAGATSAS---EPCFNEFRAS 400
Y V D+ + D++ P + +G Q++ + + + + + P + E++ S
Sbjct 406 YQQGVPKDFRKFDNMDFYFPEFAHLGEQEIKNEEVYLQQTPASNNGTFGYTPRYAEYKYS 465
Query 401 YDEVLGQLQG 410
+EV G +G
Sbjct 466 MNEVHGDFRG 475
>gi|649555287|gb|KDS61824.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649560568|gb|KDS66876.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649561020|gb|KDS67307.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649562724|gb|KDS68908.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 6]
Length=541
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 82/188 (44%), Gaps = 19/188 (10%)
Query 232 IPQLAIASRLQEYKDLLGAGGNRYSDWLDTFFA--SKIEHVDRPKLLFSASQTINVQVIM 289
I + ++ LQ + + G+RY + + + F S + RP+ L I+V ++
Sbjct 301 INDIRTSNALQRWFERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSEVL 360
Query 290 NQAGPNNFSGLDISGP---LGQQGGAIAFNEQLGRRQSYYFSEPGYLIDMLSIRP-VYYW 345
S D + P + G + N R YF E GY++ ++SIRP Y
Sbjct 361 QT------SSTDSTSPQANMAGHGISAGVNHGFTR----YFEEHGYIMGIMSIRPRTGYQ 410
Query 346 SFVKPDYLNYLGPDYFNPIYNDIGYQDVSSARIVFNGNAGATSAS---EPCFNEFRASYD 402
V D+ + D++ P + +G Q++ + + N + A + P + E++ S +
Sbjct 411 QGVPKDFRKFDNMDFYFPEFAHLGEQEIKNEELYLNESDAANEGTFGYTPRYAEYKYSQN 470
Query 403 EVLGQLQG 410
EV G +G
Sbjct 471 EVHGDFRG 478
Lambda K H a alpha
0.318 0.133 0.403 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3479077307112