bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters





Query= Contig-15_CDS_annotation_glimmer3.pl_2_3

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  483216.BACEGG_02721                                                   369   1e-116


> 483216.BACEGG_02721
Length=578

 Score =   369 bits (947),  Expect = 1e-116, Method: Compositional matrix adjust.
 Identities = 238/618 (39%), Positives = 335/618 (54%), Gaps = 65/618 (11%)

Query  3    SRLFSYGDVKGRPSRAGFDLSKKFCFTAKAGELLPVYWKMLLPGT--KVNLKDMHFTRTM  60
            + + S   ++ +PSR GFDLS K  FTAKAGELLPV  K +LPG   K+NLK   FTRT 
Sbjct  2    ANIMSLKSIRNKPSRNGFDLSFKKNFTAKAGELLPVMVKEVLPGDTFKINLK--AFTRTQ  59

Query  61   PVNTAAYTRIKEYFDWYFVPLRLINKNLNPALVNMLDQSNIANSL--IQNKVVSDEIPCF  118
            PVNTAA+ RI+EY+D++FVP  L+    N  L  M D    A S+   +N V+S E+P  
Sbjct  60   PVNTAAFARIREYYDFFFVPYDLLWNKANTVLTQMYDNPQHAVSIDPTRNFVLSGEMPYM  119

Query  119  DYDTLTSCLKAFNTQHPSYLDIA----GFERVPKTLKLLRYLRYGN---FLYDTGFSTLP  171
              + + S + A +T   +  D      G+ R   ++KLL YL YGN   FL D  ++T P
Sbjct  120  TSEAIASYINALSTAS-ALADYKSNYFGYNRSKSSVKLLEYLGYGNYESFLTD-DWNTAP  177

Query  172  SKNMNYSSVKDFNLYAKWNLNVNVLPLAAYQKIYCDYFRFEQWEKAQPYTYNFDYYSGG-  230
                         L A  NLN N+  L AYQKIY D++R  QWE+  P T+N DY  G  
Sbjct  178  -------------LMA--NLNHNIFGLLAYQKIYSDFYRDSQWERVSPSTFNVDYLDGSS  222

Query  231  -NILTEYKGDPSDLFLKDNLFSLRYANYPKDLFMGILPSSQLGSVATINISHSSSAGVHL  289
             N+   Y    ++ +   N F LRY N+ KDLF G+LP  Q G  A  +I+   +  + L
Sbjct  223  MNLDNAYS---TEFYQNYNFFDLRYCNWQKDLFHGVLPHQQYGETAVASITPDVTGKLTL  279

Query  290  TNQEGYLTGTVASDGTTITVKNTRSLTPGISPVLRTNFADLNANFDILSFRIANAIQRMR  349
            +N       TV +  TT +   T++L P    V          +  IL  R A  +Q+ +
Sbjct  280  SN-----FSTVGTSPTTASGTATKNL-PAFDTV---------GDLSILVLRQAEFLQKWK  324

Query  350  EIQQCAGQGYKEQLEARWNVKLSTALSDHCTYIGGNSSQINISEVLNNSLDTEQSQADIK  409
            EI Q   + YK+QLE  W V +    S+ CTY+GG SS I+I+EV+N ++ T  + ADI 
Sbjct  325  EITQSGNKDYKDQLEKHWGVSVGDGFSELCTYLGGVSSSIDINEVINTNI-TGSAAADIA  383

Query  410  GKGVGSGSGSESFETQ-EHGILMCIYHAVPVLDYQLTGPDLQLLNTYATDLPQPELDNLG  468
            GKGVG  +G  +F +   +G++MCIYH +P+LDY     D   L   +TD   PE D +G
Sbjct  384  GKGVGVANGEINFNSNGRYGLIMCIYHCLPLLDYTTDMLDPAFLKVNSTDYAIPEFDRVG  443

Query  469  LEALPYFTFVNDAVATQPNNVTVKSIIGYVPRYIAYKTDIDCVDGAFLTSLTSWVTPLTI  528
            ++++P    +N  + +  N   +  ++GYVPRYI YKT +D   G F  +L SWV     
Sbjct  444  MQSMPLVQLMN-PLRSFANASGL--VLGYVPRYIDYKTSVDQSVGGFKRTLNSWVISYGN  500

Query  529  DEIVTKISLGSGTGPFTP----------NYGLFKVSPYVLDSIFVSQCDSTVDTDQFLVE  578
              ++ +++L +   P  P          N+  FKV+P  LD IF  Q     +TDQFL  
Sbjct  501  ISVLKQVTLPNDAPPIEPSEPVPSVAPMNFTFFKVNPDCLDPIFAVQAGDDTNTDQFLCS  560

Query  579  SFFDVKLVQNLDYNGMPY  596
            SFFD+K V+NLD +G+PY
Sbjct  561  SFFDIKAVRNLDTDGLPY  578



Lambda      K        H        a         alpha
   0.319    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1332996093440