bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters





Query= Contig-24_CDS_annotation_glimmer3.pl_2_3

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  585502.HMPREF0645_1835                                              55.5    3e-05


> 585502.HMPREF0645_1835
Length=553

 Score = 55.5 bits (132),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 112/533 (21%), Positives = 206/533 (39%), Gaps = 90/533 (17%)

Query  5    SRKRNKKSRFKLFSGNPTSASWGTLIPTNVTRVVAGDDFSFQPGVGVQALPIVAPFMGSV  64
            +R    ++ F L   +  +A  G L+P     ++  D         ++ LP+      S+
Sbjct  11   TRPNRNRNAFDLSQRHLFTAHAGMLLPVLNLDLIPHDHVEINAQDFMRTLPMNTAAFASM  70

Query  65   CVKKEYFFIPDRIYNVDRQLNFQGVTDTPNTVYKPSIAPPIPFDISKPSGDAISFPVSAL  124
                E+FF+P             G+ D  ++  K       P  +   + D++    ++L
Sbjct  71   RGVYEFFFVPYHQLWAQFDQFITGMNDFHSSANKSIQGGTSPLQVPYFNVDSV---FNSL  127

Query  125  QTSVPSGS----------------LGAIVGPGSLADYMGEAPGSIVTGVIDLTPY-----  163
             T   SGS                L  ++G G   D  G A    V+G+ +   Y     
Sbjct  128  NTGKESGSGSTDDLQYKFKYGAFRLLDLLGYGRKFDSFGTAYPDNVSGLKNNLDYNCSVF  187

Query  164  --VGYIDIYYNYYLNQQYDLVPT------ALAGTVSDSAMEYPYYLSVFELETYLRNIKT  215
              + Y  IY +YY N  Y+   T         G + D+ +       +F+L    RN +T
Sbjct  188  RILAYNKIYQDYYRNSNYENFDTDSFNFDKFKGGLVDAKV----VADLFKLR--YRNAQT  241

Query  216  KSNFSPAIREGNSVSYSTNVKAALNAVDSEAFSWYFFAGRQSLFQRGFPSYYLEAWLKTS  275
              ++   +R+    S++T    A   VD+   +               P  Y+++     
Sbjct  242  --DYFTNLRQSQLFSFTT----AFEDVDNINIA---------------PRDYVKSDGSNF  280

Query  276  SFTDAAVDVSTSGNSVSMRNITFASRMQRYMDLAFAGGGRNSDFYESQFDVKL--NQDNT  333
            +  +  VD  +S    S+ ++  A  + + + +    G    D   + + V++  ++D  
Sbjct  281  TRVNFGVDTDSSEGDFSVSSLRAAFAVDKLLSVTMRAGKTFQDQMRAHYGVEIPDSRDGR  340

Query  334  CPAFLGSDSFDMNANTLYQTTG-----FEDSSSPLGAFSGQLSGGTRFRRRNYHFNDDGY  388
                 G DS DM  + + QT+G     ++  +  LG  +G+ +G  R  R  +   + G 
Sbjct  341  VNYLGGFDS-DMQVSDVTQTSGTTATEYKPEAGYLGRVAGKGTGSGR-GRIVFDAKEHGV  398

Query  389  FMEITSIVPRTYYP-SYINPTSRQISLGQQYAPALDNIAMQGLKASTVFGEVQSLGATSP  447
             M I S+VP+  Y  + ++P   ++     + P  +N+ MQ L +S +     S   T P
Sbjct  399  LMCIYSLVPQIQYDCTRLDPMVDKLDRFDYFTPEFENLGMQPLNSSYI----SSFCTTDP  454

Query  448  TYSNSVFAVPGFKLQDTNYVGYEPAWSELMTAVSKPHGRLC--NDLDYWVLSR  498
               N V             +GY+P +SE  TA+   HG+    + L  W +SR
Sbjct  455  --KNPV-------------LGYQPRYSEYKTALDVNHGQFAQSDALSSWSVSR  492



Lambda      K        H        a         alpha
   0.319    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1318217866240