bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters



Query= Contig-28_CDS_annotation_glimmer3.pl_2_1

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  585502.HMPREF0645_1835                                              75.5    8e-12


> 585502.HMPREF0645_1835
Length=553

 Score = 75.5 bits (184),  Expect = 8e-12, Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 12/176 (7%)

Query  257  TINQLRLAFQIQKLYEKDARGGTRYTEILRSHFGVTSPDSRLQRPEYLGGNRIPIRINQI  316
            +++ LR AF + KL     R G  + + +R+H+GV  PDSR  R  YLGG    ++++ +
Sbjct  297  SVSSLRAAFAVDKLLSVTMRAGKTFQDQMRAHYGVEIPDSRDGRVNYLGGFDSDMQVSDV  356

Query  317  VQQSATQEGS-TPQGNPVGLSL---TSDNHGDFTKSFTEHGFILGLMV----ARYDHTYQ  368
             Q S T      P+   +G      T    G       EHG ++ +       +YD T  
Sbjct  357  TQTSGTTATEYKPEAGYLGRVAGKGTGSGRGRIVFDAKEHGVLMCIYSLVPQIQYDCT--  414

Query  369  QGLDRMFSRKSRFDYYWPVFANIGEQAVLNKEIYAQGTNE-DDEVFGYQEAWADYR  423
              LD M  +  RFDY+ P F N+G Q + +  I +  T +  + V GYQ  +++Y+
Sbjct  415  -RLDPMVDKLDRFDYFTPEFENLGMQPLNSSYISSFCTTDPKNPVLGYQPRYSEYK  469



Lambda      K        H        a         alpha
   0.318    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1081269633080