bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters





Query= Contig-35_CDS_annotation_glimmer3.pl_2_2

Length=605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  575615.HMPREF0670_00477                                             61.2    3e-07


> 575615.HMPREF0670_00477
Length=541

 Score = 61.2 bits (147),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 102/234 (44%), Gaps = 47/234 (20%)

Query  306  IQRWLDLALAGGSRYSDYINSQFDVSRLKHTTSPLYLGSDRQYLG---SNV----IYQTT  358
            + + L +++  G  Y++ I + F V+  +     +Y      YLG   SNV    + QT+
Sbjct  293  LDKLLSISMRAGKTYAEQIEAHFGVTVSEGRDGQVY------YLGGFDSNVQVGDVTQTS  346

Query  359  GAGD------SSSPLGAFAGQASG---GETFRQRSYHFGENGYFVVMASLVPDVIY-SRG  408
            G  +       ++ L  + G+ +G   G  + +  +   E G  + + S+VP + Y    
Sbjct  347  GTTNPNVSEVGNAKLAGYLGKITGKGTGSGYGEIQFDAKEPGVLMCIYSVVPAMQYDCMR  406

Query  409  MDPFNREKTLGDVYVPALDNIAMEPLMVEQVDALPSLLSLQRGTDSVYTLSFRPDKLIKN  468
            +DPF  ++T GD ++P  +N+ M+P+       +P+ +SL R  D+ Y            
Sbjct  407  LDPFVAKQTRGDYFIPEFENLGMQPI-------VPAFVSLNRAKDNSY------------  447

Query  469  SALGYVPAWSKVMQSTSRAHGRLTTD--LKYWLLNRDYGVDIDQIKNTGVIGVD  520
               G+ P +S+   +    HG+      L YW + R  G D     N   + ++
Sbjct  448  ---GWQPRYSEYKTAFDINHGQFANGEPLSYWSIARARGSDTLNTFNVAALKIN  498


 Score = 39.3 bits (90),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 20/70 (29%), Positives = 34/70 (49%), Gaps = 0/70 (0%)

Query  7   TRSRNKKSNVNLSHVSPTTLAPGNLIPISFTRIFAGDDLRFKPSAFVQAMPMNAPLVNGF  66
           +R+   +S  +LS     T   G L+P+    +   D +R +   F++ MPMN+      
Sbjct  12  SRANRPRSAFDLSQKHLYTAPAGALLPVLSVDLMFHDHIRIQAQDFMRTMPMNSAAFISM  71

Query  67  KLCLEYFFVP  76
           +   E+FFVP
Sbjct  72  RGVYEFFFVP  81



Lambda      K        H        a         alpha
   0.319    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1349813388690