bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters





Query= Contig-4_CDS_annotation_glimmer3.pl_2_8

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  483216.BACEGG_02723                                                 40.8    0.23


> 483216.BACEGG_02723
Length=368

 Score = 40.8 bits (94),  Expect = 0.23, Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 24/225 (11%)

Query  1    MNEAQAGTATGMSGTSAASAAGAAPQ---------IPYTPDFQSVGVNLASALKMMSEKK  51
            MN   AG A  +SGT  ++ +  +P           PY+ D+  V   L  A+  +    
Sbjct  120  MNGGSAGVAGSVSGTQGSAPSAGSPSAQGVQPPTATPYSADYSGVMQGLGHAIDTIMTGS  179

Query  52   KTDIENLNMSDLLRSQIWQNLGATDWRNASPEA-RAYNLSQG---RRAAELGMASLEENL  107
            + +I+N   +D LR +     G      A  E  + YN ++    R A +  ++S++++L
Sbjct  180  QRNIQNAQ-ADNLRIE-----GKYIASKAIAELYKTYNEAKNDDERVAIQRVLSSIQKDL  233

Query  108  S-NQRWSNNLLVANIANSLLDADTKTILN----KYLDQQQQAELNVKAANYEYLVMSGQL  162
            S +Q   NN  V  I      A T+ +L     K+L  +Q+ +L + AA+         L
Sbjct  234  SASQVAVNNENVRQIQAQTKIAVTENLLREQQLKFLPYEQRTQLALGAADIALKYAQKNL  293

Query  163  KRQEVNNLIAEEIETYARANGYNLQNRILRETSDGLIRATNNTNF  207
              ++  + I +  ET  RANG  +QN+   ET    ++    + F
Sbjct  294  TEKQARHEIEKLAETIVRANGQAMQNQYDAETYRDRVKLVKESLF  338



Lambda      K        H        a         alpha
   0.312    0.125    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 477324767400