bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters



Query= Contig-50_CDS_annotation_glimmer3.pl_2_1

Length=242
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  298386.PBPRA1662                                                    35.8    7.4


> 298386.PBPRA1662
Length=547

 Score = 35.8 bits (81),  Expect = 7.4, Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (45%), Gaps = 13/118 (11%)

Query  90   ICILTGSRTVSHSTNVRRIYRSLPNTKKIGLINIRRRRFSTPKSAKN------IANTTTG  143
            ICI        HS ++  IY ++P+TK   L  I    F+ PK   +      ++  TTG
Sbjct  146  ICI--AEYLEQHSNSITHIYTAVPHTKYRSLTGIENTPFTPPKIDPDTPAIFLVSGGTTG  203

Query  144  NKKTI---HPILKFCLQTKLRNSNVKTSIRFIGLVIFNRNFNRGGRTLLNNITKQIGG  198
              K I   H    F +++ ++ SN+     ++ ++    NF  G   +L  ++  +GG
Sbjct  204  LPKLIPRTHNDYLFNIKSCVQASNISAKDTYLAVLPAAHNFTLGCPGILGALS--LGG  259



Lambda      K        H        a         alpha
   0.322    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332170879180