bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-8_CDS_annotation_glimmer3.pl_2_8 Length=140 Score E Sequences producing significant alignments: (Bits) Value 888743.HMPREF9141_0987 63.9 7e-10 > 888743.HMPREF9141_0987 Length=437 Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 46/113 (41%), Positives = 60/113 (53%), Gaps = 13/113 (12%) Query 21 IGTAIGAIGGAAISAIGNWFGNRSNRKASREAFERESKFAREERLAQQQWI-------EQ 73 IG+AI GG +S +G FG SN+ A A E + ARE Q Q E+ Sbjct 69 IGSAIS--GG--VSLLGGLFGGHSNKTAQDRANETNLQIAREANQNQYQMFQEQNAFNER 124 Query 74 MYEKNNSYNSPAAQMQRLKDAGLNPDLMYSRGDVGNATAPEAPAQAPTPRYNV 126 M+ + N YNSPAAQMQR DAG+NP + + G+V A A AP P+ +V Sbjct 125 MWNQMNQYNSPAAQMQRYTDAGINPYI--AAGNVQTGNAQSALQSAPAPQQHV 175 Lambda K H a alpha 0.311 0.126 0.367 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 128359518120