FEATURES             Location/Qualifiers
     gene            24..254
                     /locus_tag="Alpa_01"
     CDS             24..254
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MSAKKGKWIERFNQKNDFDFTVSRVIVTRVAYVRVIKLIPITRFSLFGITVTEAMKIARSFNTLADHVCMITLIED"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:INSD:WP_008775332.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            256..414
                     /locus_tag="Alpa_02"
     CDS             256..414
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MEAKGFVYVVVFQNSLDERVAHVYTGTFDRVFKKAKSLCSSSNYFIREIKVV"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            621..2114
                     /locus_tag="Alpa_03"
     CDS             621..2114
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MIKNSFCKCLHPKKIVNPYTNESMVVPCGHCQACMLAKNSRYAFQCDLESYVAKHTLFITLTYANRYIPRATFVDSLERPFGNDLVDKETGEILGPSDMKQEDIDRLLNKFYLFGDVPYLRKTDLQLFFKRLRYYVSKQCPSEKVRYFAVGEYGPVHFRPHYHILLFLQSDEALQVCSENISQAWTLGRIDCQISKGQCSSYVASYVNSSCTIPKVFKLSSVCPFNVHSQKLGQGFLDCQREKIYSSTPQNFVKRSIVLNGKYKEFDVWRSCYAYYFPRCKGFASKSSRERAYSYGIYDTARRLFSSSETTFSLAKEIAFYIKHFHFTDDTYLLDLFGHVSDQKSLLDLSNYFLDRDAMVRPVESDEFNRWVHRIYTELLVSKHFLYFVCTHTTLAERKSKQRMIEEFYSYLDYMHLTTFFESQQEFYESDLIGDDDLCTDQWENSYYPYFYYNVHTNEPFEKTPVYRLYASDVKKLFNDRIKHKKLNDANKIFIDE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /inference="similar to AA sequence:INSD:WP_004291031.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2141..3910
                     /locus_tag="Alpa_04"
     CDS             2141..3910
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MANIMSLKSLRNKTSRNGFDLSSKRNFTAKAGELLPVKTWEVLPGDTFKIDLKSFTRTQPLNTAAFARMREYYDFYFVPYDLLWNKANTSLTQMYDNPQHALDSSPLNVVKLDGSMPFTDLSSISRYLNSLASNSTAVTNKANYFGYNRALCSAKLMECLGYGNLYYYAESTSNTFAKRPLHYNLNVSLFNLLAYQKIYADYYRDSQWERVSPSCFNVDYMPYSTGSSGMMLSFNYSDFYENYSMFDLRYCNWQKDLFHGVVPNQQYGDVASISMSVPVVAGSSAALINSRITSSNSTTTLRFPTDPAIPDATPLLTHPSFSILALRQAEFLQKWKEITQSGNKDYKEQVEKHWNVSPGDGFSEMCTYLGGISSSLDINEVVNQNITGSNAADIAGKGTGVSNGVINFNSQGRYGVVMCIYHCLPLIDYTTDFVSPSVTRVNAADFAIPEFDRVGMQTVPLSYVSNGPLSVLPLSIPNEIGYAPRYIDYKTDIDTSIGAFKTSLKNWVISYDNQSLANQFGYSVETPESPVPNPANSSWNYTLFKVNPNSLNPLFAVEADSSIDTDQFLCSTFFDVKVVRNLDTDGLPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_008775336.1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /db_xref="InterPro:IPR003514"
                     /db_xref="InterPro:IPR016184"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3944..4414
                     /locus_tag="Alpa_05"
     CDS             3944..4414
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MFAKRRIEPYVTPVNPSPVSAKDMLCSEFRQESPIDQFLFEEFEFDGVKSVRLTSDIYMLFNQQRLDRLSRESLLSHFESMSVNEPKFGDLRAKLGDDQLISFVKSRFIQSPSELMAWSQYLMSSSDVVVAELAAVQQEQQSQQSQQSSESSASTE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /inference="similar to AA sequence:INSD:WP_008775337.1"
                     /inference="similar to AA sequence:INSD:WP_004291033.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4752..5825
                     /locus_tag="Alpa_06"
     CDS             4752..5825
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MAIGASAATLLGSGILGASAIGSTVAGNKGNASIAQQNNAFNEKMLQKQMDYNTQMYQQQLGDQWQFYNDAKQNSWDMFNAANDYNSASAQRERLEAAGLNPYLMMSGGNAGTATAQSSPQASSPSAQGVTPPTATPYSADYSGITQGLGMVLDKIATQPDRDVKSAEADNLRIEGKYKAAKTIAEIVQMRTNAKTQEGRLALDKLIYSIDKDLKSSQMDVNRESIANMQAERKLTNVQTLLVDKQLSWMDAQSKMDLAQKAADIQLKYAQGALTRKQVDHEIAKIAETEVRTSLDIQEQTTNVLKQQGMRQENSFNEATFDNRVKSVKESLWNLMHEADSYGLSKTIGRVIRPLYD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 17 and 18 "
                     /inference="protein motif:SignalP:4.0"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE"
                     /inference="similar to AA sequence:INSD:WP_008775338.1"
                     /inference="similar to AA sequence:INSD:WP_004291034.1"
                     /note="1 probable transmembrane helix predicted by TMHMM
                     Signal peptide predicted by SignalP 4.0 (Signal peptide probability ) with cleavage site probability  between residues 20 and 21"
ORIGIN
        1 agaaatttaa aacctatttg aatatgtctg cgaaaaaagg aaaatggatt gaacgtttta 
       61 atcagaaaaa cgattttgat ttcacggtat cccgtgttat tgttactcgt gttgcttatg 
      121 tccgtgttat taagttgatt cctattacta ggttttctct ttttggtatt actgttacag 
      181 aagctatgaa gatcgctaga tcttttaata cgcttgctga tcatgtttgt atgataactt 
      241 taattgaaga ttgatatgga agctaaagga tttgtttacg ttgtagtttt tcaaaactct 
      301 cttgatgagc gtgttgctca tgtttataca ggtacttttg atcgagtatt taaaaaagca 
      361 aagtctcttt gctcttcttc taattatttt attcgtgaaa ttaaagtcgt ttaatatgaa 
      421 actttctaat caacaaatct atgacatcat taagatcgtc gttactgcga ttctttcaat 
      481 ttccgcaatt ttgtttgtgc aatcctgcac agtgtcttta tctgtttcga agaacaactc 
      541 gaatagtact cagaaaacgg aacagactac tactagttca gtagattcta ctcatattaa 
      601 ctttgctcct aagttctgat atgattaaaa attctttttg taagtgtctt catcctaaga 
      661 aaatcgttaa tccttatact aacgaatcta tggttgttcc ttgtggtcac tgtcaggcat 
      721 gcatgttggc taaaaactca cgttatgcct ttcagtgtga tcttgaatct tatgttgcta 
      781 agcacacatt gtttataact cttacttatg ctaatcgtta tattcctcgt gctacttttg 
      841 tagatagtct tgaacgccca tttggtaatg atcttgtaga taaggaaaca ggtgaaattc 
      901 ttggtccatc tgatatgaaa caagaagata ttgatcgttt attaaataag ttctatctct 
      961 ttggagatgt cccctatctt cgtaaaactg atttacaatt attttttaaa agattacgtt 
     1021 attatgtctc aaaacaatgt ccctcggaaa aagtgcgtta ctttgctgtc ggagaatatg 
     1081 gacccgtcca tttccgcccg cattatcata tcttattatt cctccaatca gacgaagcgt 
     1141 tacaggtatg ttcagagaat atatctcaag catggaccct tggtcgtatc gactgtcaaa 
     1201 tatccaaagg tcagtgttca tcatacgttg cgagctatgt taatagcagt tgcactatac 
     1261 ccaaagtttt taaacttagt tccgtctgtc cgttcaacgt tcattctcag aaattgggtc 
     1321 aaggctttct tgactgtcaa cgtgagaaga tatactcatc tacccctcag aactttgtta 
     1381 aaagaagcat cgtactcaat ggcaaatata aagagtttga cgtatggcgg tcgtgttacg 
     1441 cttactactt tccccggtgt aaaggatttg cttctaaatc ttcacgtgaa cgtgcttact 
     1501 cttatggaat ttatgataca gcgaggcgtt tattctcgtc ctcagaaacg acgttttctc 
     1561 ttgcgaaaga aatagctttt tatataaaac attttcattt tacggatgat acttacttac 
     1621 ttgatttgtt tggacatgta tcagatcaga agtctttgct tgatctttct aattattttc 
     1681 ttgatcgtga cgctatggtt cgacctgtag agtcggatga atttaatcgt tgggttcatc 
     1741 ggatctatac tgagttactt gtctctaaac atttcttgta ttttgtttgc actcatacca 
     1801 cccttgctga acgtaagtct aaacagcgta tgattgagga attctactca tatcttgatt 
     1861 atatgcacct tactacattc tttgaatctc agcaggaatt ttatgagagt gatttgattg 
     1921 gtgatgatga tctttgtact gatcaatggg aaaattctta ttatccttat ttctattata 
     1981 atgttcatac gaatgaacct tttgagaaaa cccctgtgta tcgtttgtat gcttcggatg 
     2041 ttaagaaact ttttaatgat cgtattaagc ataagaaact caatgatgct aataagatat 
     2101 tcattgacga ataattgtta aacttttaat ttattaattt atggctaata tcatgtcttt 
     2161 gaagtcttta agaaataaga cttctcgaaa tggttttgac cttagttcaa aacgtaactt 
     2221 tactgcgaaa gcaggtgagc ttctccctgt taaaacttgg gaagttcttc ccggtgatac 
     2281 gtttaagatt gatcttaaat cgtttactcg tactcaacct ttgaatactg ctgcatttgc 
     2341 tcgtatgaga gagtattatg atttctattt tgttccttat gatcttcttt ggaataaggc 
     2401 gaatacttct cttactcaga tgtatgacaa tcctcaacat gcattggatt ctagtccttt 
     2461 gaatgttgtt aagcttgatg gctctatgcc ttttactgat ctttctagca tttctcgtta 
     2521 tttgaattct cttgcttcta attcaactgc tgttacgaat aaggctaatt attttggtta 
     2581 taatcgtgct ctttgttctg ctaagttaat ggaatgtctt ggttatggta atttgtatta 
     2641 ttatgcagaa tctactagta atacttttgc taaaagacct ttgcattata acttgaatgt 
     2701 gtctttgttt aatcttcttg cttatcagaa aatttatgct gattactatc gtgactctca 
     2761 atgggaacgt gtaagtcctt cttgctttaa cgtggactat atgccttata gtactggttc 
     2821 ttctggaatg atgctttctt ttaactactc tgatttctat gagaattaca gtatgtttga 
     2881 tcttcggtat tgtaactggc aaaaggattt attccacggt gtcgttccta atcaacagta 
     2941 tggtgatgtg gctagtattt ctatgtctgt tccggttgtt gctggtagtt ctgctgcttt 
     3001 aattaattct aggataactt cttcgaattc tactactact cttcgcttcc ctactgatcc 
     3061 tgctattcct gatgctacgc ctcttttaac tcatccttct tttagtattc ttgctctccg 
     3121 tcaagctgaa tttttacaga aatggaaaga aattactcag tctggtaaca aggattataa 
     3181 agaacaagta gaaaaacatt ggaatgtttc tcctggtgac ggcttctctg aaatgtgtac 
     3241 ttatcttggt ggtatttcta gttcgctgga tattaatgaa gtagtgaatc agaatattac 
     3301 aggttctaat gctgctgata ttgcaggaaa aggtactggt gtttctaatg gtgtgatcaa 
     3361 tttcaattca caaggtcgtt atggcgttgt aatgtgtatc tatcattgct tgcctttgat 
     3421 tgattatact actgattttg ttagtccgtc tgttactcgt gttaatgctg ctgattttgc 
     3481 cattcccgag tttgatcgag ttggtatgca gacagtccct ttgtcttatg tttctaatgg 
     3541 tcctttgtct gttttgcctt tgtctattcc taatgagatc ggttacgctc ctcgttatat 
     3601 tgattataag acagatattg atacttctat tggtgcgttt aaaacgtctt tgaagaattg 
     3661 ggttatttct tatgataatc aatcgcttgc taatcaattc ggttattctg ttgaaactcc 
     3721 tgagtcacct gttcctaatc ctgctaattc tagttggaac tataccttgt ttaaggttaa 
     3781 tcctaattct ttgaatcctc tttttgctgt agaagctgat tctagtattg atactgatca 
     3841 gttcctttgt agtactttct ttgatgtgaa ggtagtccgt aatcttgata cggatggttt 
     3901 accttattaa tcccctattg tttaactttt taactttatt gttatgtttg caaaacgtcg 
     3961 tattgaaccg tatgtaacac cggttaatcc tagtccggtt tctgcaaagg atatgctttg 
     4021 ttctgagttt cgtcaagaat cccctattga tcaattcctg tttgaagaat ttgaatttga 
     4081 tggtgtgaaa agtgttcgtt tgacttctga tatttatatg ttgtttaatc aacagcgcct 
     4141 tgatcggttg tctcgtgaat ctctcttgtc tcattttgaa tctatgtcgg ttaatgaacc 
     4201 taagtttggt gatcttcgtg caaaacttgg tgatgatcag ttgattagct ttgtgaagtc 
     4261 tcgctttatt caatctcctt ctgagttgat ggcttggagt cagtatttga tgagttcttc 
     4321 tgatgttgtt gttgctgaac ttgctgctgt tcaacaggaa caacagtctc aacaatctca 
     4381 acagtcttct gaatcttctg cgtctactga gtaataataa aatatttgag atttaatatt 
     4441 aattttgtct caaaaaatat tacttttatt gactttagta ttattttacg tacgtgcgcg 
     4501 tccttttttt tgcgtgcgcg tgcgataaaa gatcaggtct gcgcgcgatg gggggcccct 
     4561 ttggggggag ctgtccggct ccgttaaaaa aattctgtcc ttaagatctt tctgagtctc 
     4621 agacatggaa aactgaaaaa cgggcttgcg atcagtctcc ccttaatttt tttaacctaa 
     4681 accttatctc tgcgtgaaac gcaaattaat cgcaactttg ttgcgtattg tttaatttaa 
     4741 tttttattat tatggctatt ggtgcaagtg ctgctacatt gcttggttca ggtattcttg 
     4801 gtgcttctgc tattggttct actgttgctg gtaataaagg taatgctagt attgctcaac 
     4861 agaataatgc tttcaatgaa aagatgttac agaaacagat ggattataat acacagatgt 
     4921 accaacaaca acttggtgat cagtggcaat tttataatga tgctaaacag aattcttggg 
     4981 atatgtttaa tgcagcaaat gattataatt ctgcttctgc tcaacgtgaa cgtttagaag 
     5041 ctgctggttt gaatccttat ttaatgatgt ccggaggaaa tgcaggtact gcgactgctc 
     5101 aatcttctcc tcaggcttca tctccttctg ctcaaggtgt aactcctcct actgctactc 
     5161 cgtattctgc agattattct ggtattactc aaggtcttgg aatggtattg gataagattg 
     5221 ctactcagcc ggatcgtgat gttaagagtg cagaagctga taatcttcgt attgaaggta 
     5281 agtataaggc cgctaagaca atcgctgaga ttgtgcaaat gcgtacgaat gctaagacac 
     5341 aagaaggtcg tcttgctctt gataagttga tctattctat tgataaggat cttaaatctt 
     5401 ctcagatgga tgttaatcgt gaaagtattg ctaatatgca ggctgagcgt aaattaacga 
     5461 atgtccagac tcttcttgtt gataagcagc tttcttggat ggatgctcag agtaagatgg 
     5521 atcttgccca gaaagctgct gatattcagc ttaagtatgc acaaggtgca ttgactcgta 
     5581 aacaggtaga tcatgagatt gctaagattg ctgagacaga agttcgtact tctcttgaca 
     5641 ttcaggaaca gactactaat gttttgaaac aacagggtat gagacaggaa aactctttta 
     5701 atgaggctac gtttgataac cgtgttaagt ctgttaagga atctctttgg aatcttatgc 
     5761 atgaagctga ttcgtatggc ctttctaaga ctattggtcg tgttattcgt cctctttatg 
     5821 attaatttat tatatttgcg tgattaacca aatattttaa gttatgaaat gtttatattt 
     5881 aggctttttg cctgctggta gtgaatggct gattatttta gctgttttga ttttgtgtgt 
     5941 ttatttgttt ggtaaattta tc 
//
