FEATURES             Location/Qualifiers
     gene            complement(560..1657)
                     /locus_tag="Alpa_01"
     CDS             complement(560..1657)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MGLLGSITGGLLGLGSSAVQNSQNRQNVRETNQMNYKINQMNNQFNERMAIQQRNWQENMWNKENAYNTASAQRQRLEEAGLNPYLMMNGGSAGVAQSAGNGATAASSGNAVMQPFQADYSGIGSSIGNIFQYDLMQSEKSQLQGARQLSDAKAMETLSNIDWGNLTAETRNYLRSTGLARAQLGYVKEQQEVDNMAMTGLIMRAQRSGMLLDNEAKGILNKYLDQEQQLDLNVKAADYYQRMSAGYLSYAETKKALADEALAAARTRGQKISNEVASRIAESQIAANIAANQSSEAYHNEELKLGLSQDNARSKNIEEWYRSRNEKKRYKYYDADKWVEYGTNIGNIIGNFLPRRIVSKTFPRR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 18 and 19 "
                     /inference="protein motif:SignalP:4.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:INSD:WP_007558289.1"
                     /inference="similar to AA sequence:INSD:WP_004291034.1"
                     /note="1 probable transmembrane helix predicted by TMHMM
                     Signal peptide predicted by SignalP 4.0 (Signal peptide probability ) with cleavage site probability  between residues 17 and 18"
     gene            complement(1657..2151)
                     /locus_tag="Alpa_02"
     CDS             complement(1657..2151)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MIGKFNSLSSLEQGSGLIPNVEPDAFAVAPKFDSTEQLRVEIDDTDETRPVRYTSDVCLILHTKDLASRAGLAVASKFGQSKQPISQIQQIMDTMSDEDLLATIRSRYIQSPSEIIAWSKELSAYAENLESQAQELIDAENARQEAEKAAAAPAAASADAPSTE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2166..4007)
                     /locus_tag="Alpa_03"
     CDS             complement(2166..4007)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MASYTGMSNLQNHPHRSGFDIGRKNAFTAKVGELLPVYWDISMPGDKYRFNIEYFTRTQPVETSAYTRLREYFDFYAVPLRLLWKSAPSVLTQMQDVNKIQALSLTQNLSLGTFLPSIPLSVLSDAMYLLNGRSWTPGNSSSLKNMFGFDRSDLCYKLLSYLGYGNLISSESTGRWWSTSVSSKNDASYTQRYIQNNYVNLFPLLAYQKIYQDFFRWSQWEASNPSSYNVDYFTGVSPSLISSLLSVSPDYWKSGTMFDLKYCNWNKDMLMGVLPNSQFGDVAVLDIPDSGDSNVVLGTDSHKSSVGIASAITSKTAPFPLFALDASPENPIPINSKLRLDLSSLKSQFTVLALRQAEALQRWKEISQSGDSDYREQIRKHFGVKLPQALSNMCTYIGGVSRNLDISEVVNNNLATEGDTAVIAGKGVGAGNGSFEYTTTEHCVVMCIYHAVPLLDYTLTGQDGQLLVTDAESLPIPEFDNIGMEVLPMTQVFNSPKASIVNLFNAGYNPRYFNWKTKLDVINGAFTTTLKSWVSPVTESLLSGWFCFGYNKDDAAPDTKVIMNYKFFKVNPSVLDPIFGVNADSTWDTDQLLVNSYIGCYVVRNLSRDGVPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_021963493.1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /db_xref="InterPro:IPR003514"
                     /db_xref="InterPro:IPR016184"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4027..5745)
                     /locus_tag="Alpa_04"
     CDS             complement(4027..5745)
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MITKELQNKLATRCQHPRTVVNKYTHEPVVVSCGCCPSCVLRRSAVQTNLLTTYSAQFRYIYFVTLTYAPRFLPTLEVSIIETCSDDIADVPCVPNINELDDSDPNTYLFGFRNIPRSASIKLKNSTVERTFKDPEVKFSYPMKPKELLSILGKVKHDVPNRIPYICNRDLDLFLKRLRSYYLDEKLRYYAVSEYGPTSFRPHWHLLLFSNSERFSETICENISKAWSYGRCDASLSRGFAAPYVASYVNSFVALPNFYTQMPKVVRPKSFHSIGFTESNLFPRKVRITEIDEVTNKCLDGVSVERNGRFRTIKPTWPYLLRLFPRFSDPIRKLPSSVYQLLLSALSAPARVIRGGCADITCDPFNVNAPSKQSILSFCKQYLNYVDNYGKSNECRNFLSPQANLPYSDVLILTECRLYDGTDLESTHRLSRVYRFFLGISKFIRTYSVDGCSELFWSSGTPGGELFGRDRFLRIISEKIVTFWNRYDYNRLVDFYQTLEDANDRDLVDFELRNYSFRYNRPPDNKEKPYNKLPLVRRLAAVALMKCRGKVKHKKLNDLSGLFFYQDDPDIV"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_021963494.1"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 tcagaaactt catcaacagg aacaagaaca gtttcgcact gactaggatt taactttgat 
       61 tggatagaac acaaataata cttttccata aacttaaaaa tttaataaat tagacatcgt 
      121 tttttttaag acagaacaaa gataagaata aagatttgaa aaaaacaaat gctcatacaa 
      181 attattaaca taaataaaca ataaaatatg tgggtggcaa gctggtctgt gagtttgcgc 
      241 tataaagaca aggggagact gaaagcgatg aggtaaatcg ctttccctac gggcaaactc 
      301 atgtaggttt caccaaatta tattttaagg ggtatagcgg cgacgagaaa gaagtgattt 
      361 acggaaaatt gcttacgcgt tgcaaacgtc aagtttaaag gatgaaagta ctataaccta 
      421 cggtttgaat ttcagtcgac gaggtctccc gaaattcagg aggtgcataa ccacgcttcg 
      481 cgcggttgcc ggaagttact ccaaacaaca aaacccggca cgtatcgaat acggccgggt 
      541 aaatgtaaaa aaaagaatat caacgacgag gaaaggtctt agaaacaatc ctacgaggca 
      601 agaaattgcc tataatatta ccgatattag taccatattc aacccattta tcagcatcat 
      661 aatacttata tcttttcttt tcatttctag aacggtacca ttcctcaata ttcttactgc 
      721 gagcattatc ctgagacaaa ccaagcttga gttcttcatt atgataagcc tcagaagatt 
      781 gattagccgc aatattggca gcaatttgag attcagcaat acgagaagca acctcattag 
      841 aaattttttg accacgagtc cgagcagcag ccaaagcttc atcagccaaa gcttttttag 
      901 tttcagcata agaaagatat ccggcagaca tgcgctggta gtaatccgca gctttgacat 
      961 ttaaatcaag ctgctgttct tggtcaagat acttattcaa aatgccttta gcctcattat 
     1021 cgaggagcat gccagaacgc tgagcacgca taataagacc ggtcattgcc atgttatcaa 
     1081 cttcttgttg ttccttaacg taaccaagtt gagcacgagc tagtccagta gacctcaaat 
     1141 aattacgagt ttcagcagta aggtttcccc aatcaatatt agaaagagtt tccatggctt 
     1201 tggcatcaga aagctgccta gcaccttgca attgagactt ttcagattgc atcaaatcat 
     1261 attgaaaaat attaccaatg gaagaaccta tgccggaata atcagcctga aaaggctgca 
     1321 taacggcatt tccggaagaa gcagcagtag caccattacc agcagactga gcaacaccag 
     1381 cagaacctcc attcatcatt aaataaggat ttaaaccagc ctcctcgaga cgttgacgtt 
     1441 gggcagaagc agtgttataa gcattttctt tattccacat attttcctgc cagttgcgct 
     1501 gctgtatcgc catacgttcg ttaaactggt tattcatctg attaatctta taattcatct 
     1561 ggttggtttc ccggacattt tgtctattct gcgaattctg aaccgcagaa gaaccaaggc 
     1621 caaggagacc accagtgatt gaaccaagaa gacccattac tcagtagagg gagcatcagc 
     1681 ggaagcagca gcgggagcag cagccgcttt ttctgcttct tgtctagcat tttcagcatc 
     1741 aatcaattct tgcgcttggg actcgagatt ttcagcataa gccgacaact ccttagacca 
     1801 ggcaataatc tcagaaggag attgaatata ccgagaacga attgtagcca aaaggtcctc 
     1861 atcggacata gtatccatta tttgctggat ttgagaaata ggctgtttac tttgtccaaa 
     1921 cttagaagca acagcaagac cagcacgaga ggcaaggtcc ttagtatgaa gaatcaaaca 
     1981 aacatcagaa gtataacgca cagggcgagt ttcgtcagta tcatcaattt ctacacgaag 
     2041 ctgctcagta gaatcaaatt taggagcaac agcaaaggca tcaggttcaa cattaggaat 
     2101 aagcccagaa ccttgttcca aactactcaa agaattaaat tttccaatca taaataaaac 
     2161 aaactttaat aaggtacacc atcacgagac aaattacgga caacatagca accgatataa 
     2221 gagttaacca ataattggtc agtatcccaa gtagaatccg cattcacacc aaaaattgga 
     2281 tcaagaacag aaggattaac cttgaagaac ttgtaattca taataacctt agtatccggg 
     2341 gcagcatcat ctttattgta tccaaaacaa aaccatccag aaaggagaga ttctgtaaca 
     2401 ggagaaaccc aagatttaag ggtagtagta aaagctccat tgataacatc aagctttgtt 
     2461 ttccaattga aataacgggg gttataaccg gcattaaaca aattaacaat agaagctttc 
     2521 ggagaattga aaacttgtgt cataggaaga acctccatac caatgttatc aaactcagga 
     2581 ataggaagag attcagcatc ggttaccaat aattggccat cctgtccagt aagtgtgtaa 
     2641 tcaagcagag gaacagcatg ataaatacac ataacgacac aatgctcagt agtagtatac 
     2701 tcgaaagaac cgttaccagc accaacacct ttaccggcaa taacagcagt atcaccttca 
     2761 gtggcaaggt tattgttaac aacctcactg atgtcaaggt tacgagaaac accaccaata 
     2821 taggtacaca tattagaaag agcttggggc aatttcacac caaaatgctt gcgaatttgt 
     2881 tcacggtagt cactatcacc agattgactg atttctttcc aacgttggag agcttcagct 
     2941 tgacgaagag caagaacggt gaattgagac ttaagagatg ataaatcaag acgaagcttg 
     3001 gaatttatag gtataggatt ttcaggagaa gcatcaagtg caaaaagggg gaacggagca 
     3061 gttttagaag tgatagcaga ggcaatacca acagaactct tatgcgagtc agttcccaaa 
     3121 acgacattag aatctcctga atcaggaata tccaaaacag caacatctcc aaattgggaa 
     3181 ttaggaagaa cacccatcaa catatccttg ttccaattac aatatttgag gtcaaacatt 
     3241 gtaccagatt tccaatagtc aggagacaca gaaagaaggg aggaaattaa agagggggaa 
     3301 actcccgtaa aatagtccac attataagaa gaaggattag aagcttccca ttgagaccaa 
     3361 cggaaaaaat cctgataaat cttttgataa gcaagaaggg ggaaaagatt tacataatta 
     3421 ttctgaatat accgctgagt ataagaagca tcattcttag aagataccga agtagaccac 
     3481 caacgaccag tggattcaga tgaaattaaa ttaccatagc caagataact caaaagctta 
     3541 tagcacaaat ccgaacggtc gaaaccaaac atattcttta gagaagaaga attaccagga 
     3601 gtccaactac gaccattaag aagatacata gcatcactaa gtacagataa gggaatcgaa 
     3661 ggtaaaaaag ttccaagcga caaattttga gtcaaagaca aggcttgaat cttattaaca 
     3721 tcctgcattt gtgttaacac agaaggagcg gacttccaaa gaagacgtaa cggcacagca 
     3781 taaaaatcaa aatactcacg caaccgggta taagcagaag tttcaacggg ttgagtacga 
     3841 gtaaaatact caatgttaaa ccgatactta tcaccaggca tagaaatatc ccagtaaacc 
     3901 gggagaagct caccaacttt tgcagtgaat gcatttttgc gtccaatatc aaatccagaa 
     3961 cgatgcgggt gattctgaag attggacata ccagtgtaag aagccatagt aaaaaaaatt 
     4021 aaaaaattaa acaatatcag ggtcatcctg ataaaagaaa agaccagaca aatcattaag 
     4081 cttcttgtgt ttgaccttac ctcgacattt catcaacgcc acagcagcca aacgacgaac 
     4141 aagaggaagt ttattgtaag gtttttcctt attatcagga ggcctgttat aacgaaagga 
     4201 atagttacga agctcaaaat ctaccaaatc tctatcatta gcatcctcca aggtttgata 
     4261 aaaatccaca aggcgattat aatcataacg attccaaaaa gtaactattt tttcagagat 
     4321 tattcgtaag aacctgtctc gaccaaagag ctctcctcca ggagtgccgc tggaccagaa 
     4381 gagttctgaa catccgtcca cagaatacgt tcgaataaat tttgaaattc cgagaaaaaa 
     4441 gcggtatacg cgggagagac gatgagtaga ttccaaatca gtaccatcgt acaaacgaca 
     4501 ttcagtaaga atgagaacat cactatacgg taaattcgcc tgaggagaga ggaaattcct 
     4561 acattcattt gattttccat aattatctac ataatttaaa tattgtttac aaaaagacaa 
     4621 aatgctttgc ttagaaggag catttacatt aaatggatca caagttatat ctgcacatcc 
     4681 gccacgaatg actcgtgcgg gcgcagagag cgcagataat aataattggt aaacactcga 
     4741 tggaagttta cgaatagggt ccgaaaatcg ggggaataat cgaaggagat acggccaagt 
     4801 aggtttaatt gtgcgaaaac gtccattgcg ctcaacgctg acaccatcaa gacacttatt 
     4861 ggtaacttcg tcaatttcgg taattcgtac ctttcgagga aagagatttg attctgtaaa 
     4921 tccaatggaa tggaaggatt taggtcgcac cacttttggc atttgagtat aaaagttggg 
     4981 taaagcgaca aaactgttaa catacgacgc aacatacgga gctgcgaatc ctctcgacaa 
     5041 tgatgcatca caacgtccgt aagaccaagc cttagatata ttttcacaaa tagtttccga 
     5101 gaatcgctcg gaattggaaa acaatagcaa atgccaatgc gggcggaaac tggtagggcc 
     5161 gtattctgat acagcgtagt aacgtaattt ttcatccagg taataacttc ttaaacgttt 
     5221 taaaaataaa tccaagtcac gattacaaat ataaggaatc ctatttggaa catcatgttt 
     5281 aacctttcca aggatagata aaagttcctt aggtttcata ggataagaaa acttaacctc 
     5341 aggatcttta aaagttcgtt caacagtaga attcttcaat ttaatagagg cggaacgagg 
     5401 aatgttgcga aaaccaaaca aataagtatt agggtcacta tcgtccaact cattaatatt 
     5461 gggaacgcag ggcacatccg caatatcatc cgaacaagtt tcaataatcg aaacctccaa 
     5521 agtaggaaga aagcgaggag cataagtaag agtaacaaaa taaatataac ggaattgagc 
     5581 agaataagtg gtaagaagat tcgtctgaac agcagaacga cgaagaacac atgaaggaca 
     5641 acaaccacaa gaaacaacaa caggttcatg tgtatactta ttgacaaccg tacggggatg 
     5701 ctgacaacga gttgccagct tattctgcaa ttccttagta atcattttct atcagtaaaa 
     5761 ttaagttcca ttagacgagg cttgcggcca cgagcaaaag aaatatgaat aaaacttcga 
     5821 tattttatga gttggtcaaa tttaaaagga gaatctttta tcattgaaat aaactcatca 
     5881 acagaaaaat aaagaggttt 
//
