FEATURES             Location/Qualifiers
     gene            complement(601..1689)
                     /locus_tag="Alpa_01"
     CDS             complement(601..1689)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MGLSEKCIAPLVLGGIIAAGASLAGNAIGSASQNKTNQTSIDINRENNAFNAHQAQIQRDWQEKMWGMNNSYNSPNAMISRGLNPFVQGSAAMAGSRSPASGGAAASAASAPSLQAFRPDFSDVGSALASMAQARAAMINAEQNAALTPYKMQQILGDTNYRNIGVGQSGYWTASTGRRSALLDQSKEYQELKNMEFAGRLTSAQEAQILLDSEAQQVLNKYLDEQQQADLFIKGQTLSNLYAQGSLTEAQYKTEMAKAVKTAAETNGIRINNKIASQTADSLIYANIQSNRARGLSSLWDSKNTNVLKNIEYSKDKALRDYYKWSSKHKQKDVDSYELRNAVDYGTRIFQGIGNSIGTKGR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 24 and 25 "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1719..2162)
                     /locus_tag="Alpa_02"
     CDS             complement(1719..2162)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MRNFAYKNPDFVKDDYVPELVENHPCYQESVYDSVMYDETSDGDLIQCDMTQILLNQEKYRRLLGDMNIQNILAQMHPTQSTVMDGMTDEDRFACVISRHCQTMSERQAVLQQLASEKSELTAYAEAMLAEQQSAPDPSPAPDTSVQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2173..3912)
                     /locus_tag="Alpa_03"
     CDS             complement(2173..3912)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MSDFNPLNRARISTHRSSFDLSSKKLFTAKVGEILPCYWQIAIPGNKYRISSDWFTRTVPVNTAAYTRIKEYYDFYAVPLRLISRALPQAFTQMTDYITSAASSTANSSTLTSVPFVSQTLFNAFFQTANAGDQPNTRDDAGLPIVYGSCKLLDMLGYGSMIASNNPSKAAITKKYLGVDSLNDADNPLVYQTSQTVNALPFLAYQKIYYDFFSNSQWEKHKAYAYNVDYWSGAGNIGLVTDMVQLRYANYPKDYFMGMLPSSQYGSVAVLPSISSSSDSRSLLYYEPSSSATAALQSAGGSSSSVRLSQTVSSSQGIRLNSDLSALSIRATEYLQRWKEIVQFSSKDYSDQMAAQFGIKAPEYMGNHSHYIGGWSSVININEVVNTNLDADSSQASIAGKGISSNSGHTLTYDCGAEHQIIMCVYHAVPMLDWNLTGQAPQLTVTAISDFPQPAFDQLGMQSVPSLNLQNNPGRNVSGALGYNLRYWQWKSNIDTVHAGFRAGAAYQSWVAPLDGWNVLTSSGAWSYQSMKVRPQQLNSIFVPQVDSANCSVAFDQLLCNVNFQVYAVQNLDRNGLPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_021963493.1"
                     /inference="similar to AA sequence:INSD:WP_008775336.1"
                     /db_xref="InterPro:IPR003514"
                     /db_xref="InterPro:IPR016184"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3940..5619)
                     /locus_tag="Alpa_04"
     CDS             complement(3940..5619)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MKFSPDLLKAADHCQHRSFITNRYTGARIAVDCGQCDYCIHKRAQKASMRVKTAGSAFKYSYFVTLTYDNEHIPLMRCKVLHSEYEDVVGISGDIHFGDEYHHYIPVSEYQCDDSSALRHIFFEQVQGTVPYDREIKEYVPVKDNWFLSIDAIRSFIHKTQALGKTDYPVAEQYGRDNLIPFLNYVDVQNYIKRLRKYLFKVLGSYESLHFYAVGEYGPVHFRPHFHLLLFTNSDEVAEVLRQCHDKSWKFGRSDFQRSAGGSASYVSSYVNSLCSAPLLYRSCRAFRPKSRASVGFFEKGCDFVEDEDPYAQIEKKIDSVVNGRCYNFNGVSVWSTPPMSYVRTLLPRFSSARNDDSTAIIRILRAVHSTPARIARFGFIDYNQDSVLSLVRAYYQYLQSNSILSDDDKIILHNARCLTRFVNCSSDVDIESFINKLYRLFLYVYKFFRNWHLPSFGSNLDAYSNRIRFIIKTGIEYETKKNYESLRDVFNIRSANPDISDCMFALPANGQERDVLSNVSRETVQLLEQLRYRSAAYCRDMIKHKKLNDANGIFNRMV"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /inference="similar to AA sequence:INSD:CDL65688.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 gaaataataa acttttgcat aattttaata atttttaaag cattaataat agctgtaact 
       61 tctatacgac gcaaaggtat aagattttct tgtatttcca aaattttttt tagaaattgt 
      121 gggaacagga ccatttgtga tggagtgtga gttgtacgtt tatggacaag ggataggaga 
      181 atccgagagg ataactcgga tttgcttcgc atacaactag gggcttcgct taattaacac 
      241 tcattaagag agttgagatc tgaacaagta taagcactgg aattgacaaa gtgtaactcc 
      301 tggacttgac aaaatgtaac tcctggactt gacaaaatgt aactcctgga cttgacaaaa 
      361 tgtaactcct ggacttgaca aaatgtaact cctggacttg acaaaatgta agatatatac 
      421 aaaaagggta taggcacggc aggtcagata gaacctgcct ttgcgcacct tcgtgctaaa 
      481 ataccggagc ggaacgctcc tataaggaag tcgctccgct ccatatttcg atcaggccct 
      541 acgcgggcgg cgggtgtata tcgctcaaac gccgcgatgg gcttttagtc ctgaagtacg 
      601 ctacctaccc ttagtaccga ttgaattgcc aataccttgg aatatacgtg taccataatc 
      661 cacagcatta cgtaactcat aagaatcaac atccttctgt ttatgtttag aactccactt 
      721 ataataatca cggagagcct tatccttgga atactcaata ttcttaagaa cattggtatt 
      781 tttcgaatcc cacaatgaag atagacctcg agcacgatta gactgaatat tagcataaat 
      841 cagagaatca gcagtttggg aggcaatctt attattaata cgaataccat tagtctcagc 
      901 agcagttttt acagctttag ccatttcagt tttatactga gcttctgtaa gagaaccttg 
      961 agcatacaaa ttagataagg tctgaccttt aataaacaga tcagcctgtt gttgttcatc 
     1021 aaggtactta ttaagcacct gttgggcttc agaatcaagg agaatctgcg cttcttgagc 
     1081 agaagtaaga cgaccggcaa actccatatt cttaagctcc tgatattcct tagattgatc 
     1141 caggagtgca gatcggcgac cggtagacgc agtccaataa cctgactggc caacaccaat 
     1201 attacgataa ttggtatcgc ctaagatctg ctgcatctta tacggagtaa gagcagcgtt 
     1261 ctgttcagca ttaatcatag cagcacgagc ctgcgccata gaagcaaggg cagaaccaac 
     1321 atccgaaaag tcgggtcgaa aagcctgtaa actaggggca gaagcggcag aagcagcagc 
     1381 accaccagaa gcgggagacc tagagccggc catagcggca gaaccttgaa caaacggatt 
     1441 caaaccacgg gaaatcatcg cattggggga attataggaa ttattcattc cccacatttt 
     1501 ttcctgccag tcacgctgaa tctgagcctg gtgggcatta aatgcattat tctcacgatt 
     1561 aatatcgata ctagtctgat ttgtcttgtt ctgagaagcg gatccgatcg cattaccagc 
     1621 aagagaagca ccagcagcaa taataccacc aagaacaagc ggagcaatac acttttcgga 
     1681 gagccccatt aaggggcttt ctccaatatc atagaacctc attgaacaga agtgtcaggg 
     1741 gcgggcgacg gatcgggcgc tgactgttgc tctgccaaca tcgcttcggc ataagccgtt 
     1801 agctcagact tctcactagc caattgctgt aacacagctt ggcgttccga cattgtctga 
     1861 caatgacggg aaattacaca agcaaatcgg tcttcgtcag tcataccatc cataacagta 
     1921 gactgagtag ggtgcatttg agcaagaatg ttctgtatat tcatgtcacc aagtaagcga 
     1981 cgatattttt cctgatttaa caagatttgg gtcatatcgc actgaatcag atcaccatca 
     2041 gaagtttcat catacatcac agaatcatat acagattcct gataacatgg atgattttca 
     2101 accaattcag gaacataatc atccttaaca aaatcaggat ttttataagc aaaatttctc 
     2161 ataacaaaca aattaataag gtaaaccatt acgatccaag ttttgaacag catatacttg 
     2221 gaaattaaca ttacacaaca gttgatcaaa cgcaacagaa caattggcag aatcaacctg 
     2281 aggaacaaat atagaattta actgttgggg acgaactttc atagactgat aagaccaagc 
     2341 accagaggaa gtcaacacat tccaaccatc aagaggagca acccaagact gataagcagc 
     2401 accggcacga aatccagcat gaacagtatc aatattagat ttccactgcc agtagcgaag 
     2461 attataacct aaagcaccag aaacattacg accgggatta ttctgaagat tcagagaagg 
     2521 aacagactgc ataccaagct gatcaaatgc aggctgcgga aagtcagata tagcagtaac 
     2581 agtcaactga ggagcctgac cggtcaaatt ccaatccaac ataggcacag catggtatac 
     2641 acacataatt atctgatgtt cagcaccaca atcataagta agagtgtgtc cagaattact 
     2701 ggatatgcct ttaccagcaa tagaggcttg ggaagagtcg gcatcaagat tagtattaac 
     2761 tacttcgtta atgttaatta cgctagacca accaccaata taatgtgaat ggttacccat 
     2821 atactcggga gctttaatac caaactgagc agccatctga tccgaataat ctttactact 
     2881 gaactgaact atctctttcc aacgctgaag atattctgta gcacgaattg agagagcaga 
     2941 aagatctgaa ttaaggcgga taccttgaga cgacgataca gtttgagaca aacgaacaga 
     3001 tgaggaacta cctccagcag attgcaaagc agctgtagca gaagaagagg gctcataata 
     3061 aagcaaggaa cgagaatcag aagaagaaga aatagacggt aaaacagcta ccgaaccata 
     3121 ttgagaagaa ggaagcatac ccataaaata gtccttagga taattcgcat aacgcagttg 
     3181 aaccatatcc gtaaccaatc caatattacc agcaccggac caatagtcta cattataggc 
     3241 ataagccttg tgtttctccc attgactgtt actaaagaaa tcataataga ttttctgata 
     3301 agcaagaaat gggagagcat taactgtctg cgaagtctga taaaccaaag gattgtcagc 
     3361 atcattaaga gaatcaacgc ctaaatattt tttagtaata gcagccttag atggattatt 
     3421 agacgcaatc atagaaccat aaccaagcat atcaagtaac ttacaggaac cgtaaacaat 
     3481 aggaaggccg gcatcgtctc gagtattagg ctgatcaccg gcattcgccg tttggaaaaa 
     3541 cgcattaaat agagtttgtg aaacaaaagg aacagaagta agtgtagatg aattagcagt 
     3601 agagctagcc gcactagtaa tataatctgt catctgggta aacgcctgag gaagcgcacg 
     3661 agaaatcaga cgtaacggca cagcatagaa atcataatac tccttaatac gagtataagc 
     3721 ggccgtatta acaggaacgg tacgggtaaa ccaatccgaa gaaatacgat acttattacc 
     3781 aggaatagca atctgccaat agcatggtaa gatctcacca accttagcag tgaataactt 
     3841 cttcgaactt aagtcgaatg aagatcgatg cgtagatatt ctcgctcgat tcaagggatt 
     3901 aaaatcactc ataatgtaat aaattaaaag ttataaaaat taaaccatac ggttaaaaat 
     3961 accattagca tcattcaact tcttatgctt aatcatatca cgacagtatg ccgcactacg 
     4021 gtaccggagt tgctcaagga gttgaaccgt ttcacgtgaa acatttgaca agacatcacg 
     4081 ctcctgcccg ttcgcaggca acgcaaacat acaatccgat atgtccgggt tagcggagcg 
     4141 tatgttgaat acatctcgta gactttcata attttttttc gtctcatact ctatacctgt 
     4201 tttaatgata aaccgaatac gattggagta agcatcaaga ttagaaccga aggaaggcaa 
     4261 atgccaatta cggaagaatt tatagacata taagaacagc cgatataact tattaataaa 
     4321 agattcaata tcgacatcac tagaacagtt gacgaaccga gtaaggcacc gagcattatg 
     4381 taatataatc ttgtcatcat cagatagaat cgaattagat tgaagatatt gataataagc 
     4441 acgtacaaga ctcaagaccg agtcttggtt atagtcaatg aagccgaacc tcgcaattct 
     4501 tgctggcgtc gaatgtacag ctcgaagaat tctaataatc gcagtactat cgtcattgcg 
     4561 agcagacgag aatcggggga gtaaggtacg gacatacgac atgggaggag ttgaccaaac 
     4621 actgacacca ttgaagttgt agcatcttcc gttaacgaca gaatcgattt ttttctcaat 
     4681 ctgcgcataa gggtcttcgt cttccacgaa atcgcagccc ttttcaaaaa atccgacaga 
     4741 tgctcgtgac ttgggtctaa atgcgcggca tgaacgatat aagaggggag cagagcacaa 
     4801 gctgttaacg taactcgata cgtacgaagc agatccgcca gcggaacgtt ggaaatctga 
     4861 acgaccgaat ttccaactct tatcgtgaca ttgtcgtaga acctctgcga cttcgtccga 
     4921 gttcgtgaat aataacaaat ggaaatgcgg acggaaatgg actggaccat attcgcccac 
     4981 agcgtagaaa tgtaacgatt cataagagcc taatacttta aataaatatt tacgtaaacg 
     5041 ttttatatag ttctggacat caacataatt cagaaaggga ataaggttat cacgaccgta 
     5101 ttgttcagca acgggatagt ccgttttacc aagggcttgc gtcttatgga taaaactacg 
     5161 aatagcatcg atagaaagaa accaattgtc cttaacagga acatattcct taatttcacg 
     5221 gtcatacgga acagtaccct gtacctgttc gaaaaatata tgacgcaatg cggagctatc 
     5281 atcacattga tattcagaaa cagggatata atgatggtat tcatcaccaa aatggatatc 
     5341 tcctgaaatg cctacaacat cctcatattc agagtgaaga accttacaac gcataagagg 
     5401 aatatgctca ttatcatacg taagtgtaac aaaataagaa tacttaaaag cacttccagc 
     5461 ggtcttcaca cgcatggacg ctttctgagc acgcttatgg atacaataat cgcattgacc 
     5521 acaatctacg gcaatgcgtg caccagtgta cctattcgta ataaacgaac gatgctgaca 
     5581 atgatcagct gccttaagca aatcaggaga aaatttcata taaccaagag cctgtaatgg 
     5641 caataaatat aaatataaac aataaaatca atcaaacacc gatagcgcta aggatatagc 
     5701 ctaaagcagc agaaatagcg ccaataacaa tcttccaaat atgattactc ttcatctctc 
     5761 tgagttttaa gttcgacaaa atcattttcc tctctaatcg agtccacaat aacgataaga 
     5821 cccaattgag aaactcgttc agaataatgt ccaagacctt caagagaatt aacaatataa 
     5881 ggcggaataa catcacg 
//
