FEATURES             Location/Qualifiers
     gene            67..1107
                     /locus_tag="Alpa_01"
     CDS             67..1107
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="LDELREEILLTKGNTAYIVNNSNNVPLLKSFTQRMTTNLLNTTSSQFGLALKTYNSDLLQNWINTEWIEGEQGINEISAVDVSNGQLTMDALNLAQKVYNMLNRIAVSGGTYRDWLETVFTGGNYMERCETPVFEGGMSQEIVFQEVISNSASGEEPLGTLAGRGISTEKQKGGHVKIKVTEPCYIIGIGSITPRIDYSQGNEFYAYHQTVDDIHKPALDGIGYQDSVNWQRAFWDRQYNTTGQIQQPAVGKTVAWINYMTNINRTFGNFADNNSEAFMVMNRNYEYRSGTTFGTTAINDLTTYIDPVKFNYIFADTNLDAMNFWVQTKFDIKCRRLISAKQIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /inference="similar to AA sequence:INSD:AHN52939.1"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1110..1433
                     /locus_tag="Alpa_02"
     CDS             1110..1433
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MKTRIVPSFFNRMKPCECFEGETIEEKVNRVVNNNEPITDGAPIIFTEKKDGVLPEYNPRTDRWDIALTAMEKMDRARKAKKEQGVKPEDFGKDVPNKLEGGSPSEN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1600..2544
                     /locus_tag="Alpa_03"
     CDS             1600..2544
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MLGAIMGVIGAASALQSGSNQSYNEEQAQLRQAQINKEQAKYSQGLAMEYWDYTNWENQIDHLKKAGLNPALMYAKGGTGGQTGGGQAQGVGLSPSNQEAVKAQQIGMALQLAQLKSQIEVNESVAKKNTAEAEKTAGVDTEATKIGIKLSEAQVLSERERKNVLYWEAEVAQSESVLKEALANTEQFNLQKVQWDIRMVEKGYEELSERVAMLKRENKIGDATAEMQIEQYKANLVDTWAGAMLKMAQTETQKEEVKAIAERLKQKDYELDQKDTEIIQRWVDLGIKGVSEVGELLTGIKKLSHLAKKLNIGK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 14 and 15 "
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE.00802"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2711..3523
                     /locus_tag="Alpa_04"
     CDS             2711..3523
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MSEELRHDPNAYFMTLTFSEEKLEEYKKLCNSEDPNTIATKAMRLMLERCRRKLKHSIKHWFITELGHNGTERMHLHGLVWGIGMDKLVEEKWQNGIVFTGTFVNEKTINYITKYITKTDEYHKEFIGQILCSAGIGNGYTQRSDAQKHTYKKGETIETYRLRNGAKINLPTYYRNKLFTEEEREKLWIDKIEKGIVWVMGQKVKIDNTEEYEALLEQARHDAIRLQGHQEQNWDKQKYFKRLEKQRKKQQKELRKWENHMFQSTEECPF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4026..4238
                     /locus_tag="Alpa_05"
     CDS             4026..4238
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MAATNWTVIRRNKKSGAIVMTNLEAKWTYKIALGIATESNINETHELICVVETSKILLKDDKEEKKESDL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4273..4470
                     /locus_tag="Alpa_06"
     CDS             4273..4470
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MKTFVWYNSHTNEETEGFEIIDDEIQKHYIFTKKERRLLCEKIYDKNEDYEKWMKSLQLNLFNDE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4666..4917
                     /locus_tag="Alpa_07"
     CDS             4666..4917
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MEREFKDMKECFQIRPTDESGEKWMITIGNHLATEEVFKSRKAAEMKINKTDWNLVSAFFFAIKEAVEFENKLKEQKIQETEE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 tatacatact aaaaagacat gacatccaaa caaagagtta taattgcaaa taacaatcta 
       61 ggacaattgg atgaactaag agaagaaatc ctcttaacaa aaggaaatac agcatacatc 
      121 gtaaacaata gtaataatgt accactgtta aaatcattca cacaaagaat gaccacaaat 
      181 ttactgaaca ctacatcaag ccagttcgga cttgcattaa aaacttacaa tagcgattta 
      241 ttgcaaaact ggatcaacac cgaatggatc gaaggagaac aaggtatcaa cgaaatctct 
      301 gcggtagatg taagtaacgg acaactgaca atggatgctc tgaacttagc gcaaaaagtt 
      361 tataacatgt taaacagaat tgccgtaagc ggtggtacat atcgtgattg gttagaaacc 
      421 gtattcacgg gaggtaacta tatggaaaga tgtgaaacac ctgtattcga aggaggtatg 
      481 tcacaagaaa tcgtattcca agaagtgatc agcaacagtg caagcggaga agaaccatta 
      541 ggtacactag caggtagagg tatcagtaca gaaaaacaaa aaggcggtca cgtaaaaatc 
      601 aaagtaacag aaccatgcta tatcatagga atcggatcaa tcacaccacg aattgattac 
      661 tcacaaggga acgagttcta tgcataccac caaacagtag atgacattca caagccggca 
      721 ttagacggaa ttggctacca agatagcgta aactggcaaa gagcattttg ggacagacaa 
      781 tataatacaa caggtcaaat ccaacaaccg gcagtaggta aaacagtagc atggataaat 
      841 tacatgacca acataaacag aacgttcgga aatttcgctg acaataattc tgaagcattc 
      901 atggtaatga acagaaatta cgaataccga tcaggaacaa cgttcggaac gacagcaata 
      961 aatgacttga caacgtacat cgaccctgtg aaatttaatt atatattcgc agatacgaac 
     1021 ctagacgcaa tgaacttttg ggtacaaaca aaatttgaca tcaaatgtcg tagacttatc 
     1081 agtgcaaaac aaattccaaa tttataatta tgaaaacaag aatagtacca tcattcttta 
     1141 acagaatgaa accatgcgaa tgtttcgaag gtgaaacaat cgaagaaaaa gtaaacagag 
     1201 tggtaaacaa caatgaaccg atcacggacg gagcacctat catatttacg gaaaaaaaag 
     1261 acggtgtatt acccgaatac aatccaagaa ctgacaggtg ggacatagca ctgaccgcaa 
     1321 tggaaaaaat ggacagagct agaaaagcca aaaaagaaca aggagtgaag cccgaagatt 
     1381 tcggtaaaga tgtaccgaac aaactagaag gtggatcgcc aagtgagaac taaacgccat 
     1441 ccggctttgg cggtaagacc acaaggatat ttgcgagagg aatgtaaaaa ttcctctcaa 
     1501 taaaatcgca aatggtacgc atgtggtata ttatatcaag tatatagtaa gactcttttt 
     1561 aaaaaaagag cgaaaaatgt aaatttaaat tatcaagtta tgttaggagc aataatggga 
     1621 gttatcggtg cagcgtcagc cttacaatcg ggaagtaacc aaagttacaa cgaagaacaa 
     1681 gcacaactga gacaagcaca gatcaacaaa gaacaagcca agtacagtca aggactggcg 
     1741 atggaatatt gggattacac caactgggaa aatcaaatag accacctaaa gaaagcagga 
     1801 ttgaatcctg cactaatgta tgccaaaggt ggaacaggag gtcaaacagg tggcggacaa 
     1861 gcacaaggag taggattatc gccaagtaac caagaagcag taaaagcaca gcaaatagga 
     1921 atggctttgc aactggcgca attaaagagc caaattgaag ttaacgagtc tgtagcaaag 
     1981 aagaataccg ctgaagcaga aaaaaccgca ggagtggaca cagaagcgac aaaaataggt 
     2041 attaaattaa gcgaagcaca agtactttca gaaagagaac ggaaaaatgt gttatattgg 
     2101 gaagcagaag ttgctcaatc agaatcagta cttaaagaag cattagctaa taccgagcaa 
     2161 tttaacttgc aaaaagtgca atgggacatc cgaatggtag aaaaaggcta tgaagaattg 
     2221 tcagaaagag tagcgatgct caaacgtgaa aacaaaatcg gtgatgctac agcagaaatg 
     2281 caaatcgaac agtataaagc aaacttagta gatacatggg caggagcgat gctcaaaatg 
     2341 gcgcaaaccg agacccaaaa agaggaagta aaagctatag ctgagagatt gaaacagaag 
     2401 gattacgaac tggatcaaaa agataccgaa attatccaaa gatgggtaga tctaggaatc 
     2461 aaaggtgtca gcgaagtagg agaattactt acaggaatca aaaaattgtc acacttagca 
     2521 aaaaagctaa atataggaaa gtaaaatgtg tctctatccc aagttaatta aaaacaagaa 
     2581 atacttgcca aacaagaaaa acaactggaa tcctccaaaa tgtgaagatt atagggtgtt 
     2641 atacgttacg gcagcttgtg gaaaatgctt ggaatgcagg aaacagaaac aaagggaatg 
     2701 gttagtgcgc atgagcgaag aattgagaca tgatccaaat gcttatttta tgacactaac 
     2761 cttttccgaa gaaaaactag aagaatacaa gaaattatgt aacagcgaag acccaaatac 
     2821 tatagcaaca aaggcaatgc gcctcatgct agaaagatgc cgacgaaagt taaaacattc 
     2881 gataaaacat tggttcatta cagaattagg acacaatggt acagaacgta tgcacctaca 
     2941 tggactcgta tggggaatag gtatggacaa gttagtagaa gaaaaatggc aaaacgggat 
     3001 agtattcact ggaacgttcg taaacgaaaa gactataaac tacattacaa aatatattac 
     3061 aaagacggac gaataccaca aagaattcat tggtcaaata ttgtgttcag ctggtatcgg 
     3121 gaatggatat acacagcgtt cggacgcgca aaaacacact tataaaaaag gggaaacaat 
     3181 tgaaacatac agattaagaa acggagcgaa gataaattta cctacatact acagaaacaa 
     3241 actatttaca gaagaggaac gtgaaaaact gtggatagac aaaatagaaa agggaatcgt 
     3301 atgggtaatg ggtcaaaaag tgaaaatcga caacacagaa gaatatgaag cattattaga 
     3361 gcaagcaaga catgatgcga taagattaca aggtcaccaa gagcaaaatt gggacaaaca 
     3421 gaaatacttc aaaagactag agaaacagcg aaagaagcaa caaaaggaat tgagaaagtg 
     3481 ggaaaaccac atgtttcagt caacagaaga atgtcctttt tagttttcgt ttcacgaaaa 
     3541 catcctgtcc gtaacgaacg gactacacca tgcggaaaat tttattttaa ttttacaggg 
     3601 aggaaagggt agagtaagac agaaggacag ctaccttaag acctgattta aataagggcg 
     3661 tgcacccgac caaaaggtcg tggtgtgcgc ctttggcgat atcaaggtgc taacgctcta 
     3721 ggggtatgcc cctagaaccc cttatttgtc gctcgcgcta tggaaacgtt aagaaaagct 
     3781 ataaaaatca gtaaatattt ggagaatcag aaaatacacg tatctttgta atgttcaaaa 
     3841 aaaacaaaga gtattaaccg ttccacatgg aacattaaaa acaaaaaaat tatgtattgg 
     3901 gaaaaaatta aaaatgaaat ttgcgtagaa gtattcgcaa tggacgaaga aggaacaaaa 
     3961 gtgattatca gagaaatcgt tggagacaaa ggtattcacg aaaacaaaga agaggaggta 
     4021 taatcatggc agcaacaaat tggacagtaa tcagaagaaa caaaaaaagc ggtgcaatcg 
     4081 taatgactaa tctagaagct aaatggacat acaaaatagc gctagggatc gcaactgaat 
     4141 caaacattaa cgaaacacat gaacttatat gtgtggtgga aacatctaaa attctactaa 
     4201 aagatgataa agaagagaaa aaagagagcg atttatagta tcggtaaaaa aacattcgat 
     4261 acattcaaag cgatgaaaac gtttgtatgg tataacagcc acacaaacga agaaaccgaa 
     4321 ggattcgaaa taattgatga tgaaatacaa aaacattata tattcactaa aaaagaaagg 
     4381 aggttattat gtgaaaagat ttatgacaaa aacgaagatt atgaaaaatg gatgaaaagt 
     4441 cttcaactaa atttatttaa cgatgaataa aaaaatcatt tacaaaatcg tagagatcat 
     4501 ttgcactgca attatcagta ttgcagcagt actaacagca caaagttgta ctatgtcact 
     4561 aagtgtcagt aaaaataata gtaacagtac tcaaaaaacc gaacaaacga caactaactc 
     4621 ggtagatagt actcatatta acattgatcc aaaaaaatat taacaatgga aagagaattt 
     4681 aaagacatga aagaatgctt tcagatcaga ccaactgatg aaagcggtga aaaatggatg 
     4741 atcacaattg gtaatcatct agcaacagaa gaagtgttca aaagcagaaa agcagcagag 
     4801 atgaaaatca acaaaactga ttggaatcta gtaagcgcat tcttctttgc aataaaagaa 
     4861 gcagttgaat tcgaaaataa attaaaagaa caaaaaatac aagaaacgga ggaataaacc 
     4921 atgacactaa agaaaaacat tggtaaaaac accattggtg ataacaaaaa aatggaagtt 
     4981 gatctgagga catataacat gtcaactcat gacttatcaa ccatatttag aaacactcaa 
     5041 agcccgggaa cacttgtacc aaccttatgt ttactggcaa caaaaaggag atacattaga 
     5101 cattaacatc gaaagtcatg tactaactca cccaacagta gggccgttat tcggtagctt 
     5161 caaacatgag aatcacctgt ttacagtacc tattcgactg tataacagct ggttacacaa 
     5221 caacagaaca aaggtaggtc tcgatatgag ccaaatcaaa ttaccacagc tgagaacaac 
     5281 agtaacaata gcagacaatc cataccaagc caacaacaat catccatgga cacaagtcaa 
     5341 tccaagttgt ttattagcat acctaggggt aagaggttat ggttcggtaa ccggcaatac 
     5401 aggagaaaaa gtcaacatag acataaacgc agtaccacta atcggctact acgatatatt 
     5461 taaaaactac tacgcaaaca cacaggaaga aaatttttgg acaatcggag caacacctaa 
     5521 agttgcaaaa gtgacagtaa caacaggaac ggatatattc gtaagcgata atccggaaaa 
     5581 aatgcaaata ccaatcatca acaacaaatc aacactacaa ttccagcctg ccggtatatt 
     5641 tcaaaacgat gatctagaat taacattctt cagttcagcg tcagaagcat atctaacatt 
     5701 taaacccgaa gaaatcggtg aattcaaccc agatgaagga gatctcgcaa tcaataaact 
     5761 accatcaaat caagatttat acatactaaa aagcatgaca tccaaacaaa gagttataat 
     5821 tgcaaataac aatctaggac aattggatga actaagagaa gaaatcctct taacaaaagg 
     5881 aaataca 
//
