FEATURES             Location/Qualifiers
     gene            complement(623..850)
                     /locus_tag="Alpa_01"
     CDS             complement(623..850)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MKKNYYQLQVYYYQKGYITIYAYSGFRSNANRKFRSYLASNFPNYQSSVFRVLTYSSIMSMLHGYPSISCASFNP"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(944..2095)
                     /locus_tag="Alpa_02"
     CDS             complement(944..2095)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="VLLLDHLIQLNNNSFVQFGIPPLVAAGLASGAASLVGNLFGTSSSNSKNMQINKMNNEFNAREAEKARQYQTEMWNKTNEWNSPKNIRKRLQEAGYNPYLGMDSSNVGTAQSIGSSSPASAAPPIQNNPMQFDGIQNALSTAIQMDNATNVSNAEVFNLQGQKSLADANAADILSNIDWYKLTPEYRNWLQTTGMSRAQLSFNTDRQNLENMQWTNKIQRAQRTDILLSNEAKRIINKYLDSSQSLQLKLLANQSFQAFASGRLSLQQCKTEVTKQLMNMAETEGKKISNKVASETADQLIGALQWQYSSDEMFSRGYAGYAREAGKSRGKGDVAKGKLDEYNYSSRYWNTGIESIGRIGNGIGLPLMLGRGLRGPKAIKGFR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:INSD:WP_007558289.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2061..2591)
                     /locus_tag="Alpa_03"
     CDS             complement(2061..2591)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MENKISNKVCFGRGFRKVDPSISAVGFNPAVREKEIAVEIDPVSKFCIETIGEGPDKYYRYRSDISMLLHAKDTANKIGIEGLRYLSESRRTKTSAIQSQLDQMDDQLLLDTVKSRHLQSPSEILAWSESLIQVAHELETRVGAEIRKKYDEEIAAAAAASTVGSSASAGSPDSAE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2603..4513)
                     /locus_tag="Alpa_04"
     CDS             complement(2603..4513)
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MAHFTGLKELQNHPHKAGFDIGSKNLFTAKVGELLPVYWDFAIPSCDYDIDLAYFTRTRPVQTAAYTRIREYFDFYAVPCDLLWKSFDSAVIQMGEVAPVQAKTPLDPLTVGTDIPWCTLSDLYTSLIFMNNRVSLGQTVSVVPDYSNIFGYSRCDTSHKLLLYLNYGNFVEPSSSNVGTSTNRWFNTSFTSSAVQNYSQKYSQNVSVSLFPLLAYQKIYQDFFRWSQWENADPTAYNVDYYNGSGNLFGNGGIASSIPSSNDYWKRDNMFSLRYCNWNKDMFMGLLPNSQFGDVAVVSGVEGIDTFVPVEVFNSINETNIAKPPLTGTHTPVYTDDAMTSSTTPSRIRVAGGSGIPSSVAGSALGVRSLLGGEFSILALRQAEALQKWKEITQSVDTNYRDQIKAHFGINTPASMSHMAQYIGGIARNLDISEVVNNNLSETGSEAVIYGKGVGTGSGKMRYHTGSQYCIIMCIYHAVPLLDYAISGQDSQLLCTSVEDLPIPEFDNIGMEAVPAITLFNSNAFDNDLESDFDFLGYNPRYWPWKSKIDRVHGAFLTTLKDWVAPIDDFYLNRWFASGGSSQASISWPFFKVNPNTLDSIFAVAADSTWESDQLLINCDVSCKVVRPLSQDGMPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65742.1"
                     /inference="similar to AA sequence:INSD:WP_008775336.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4526..6361)
                     /locus_tag="Alpa_05"
     CDS             complement(4526..6361)
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MIPKEELLTKYLFTECLRPQRIVNPYSHDVIFAPCGRCKSCIMNKSNFATAYAMNMATHFKYCYFVTLTYKDIFLPYLSVEVVRRSGNRYLFDENFETMVSTSDPRLLTPEYYHDRDLSLDPAQNEVEQVFDIGFQSIPRDVSVKSKGSFRFRSFDDEPLKFCIPMKLTELQDILIKANGRYDYGKKKVVYPSLADCKLQIPVLQSRDIELFFKRLRRNLDSHGFTSSKICYYVVSEYGPQTYRPHWHCLLFFNSEEITQTLREDISKAWAYGRIDYSLSRGAAASYVASYVNSAACLPFFYVGQKEIRPRSFHSKGFGSNKIFPKSSDVSEISKISDLFFDGVNVDSNGKVINIRPVRSCELAVFPRFSNDFFSDSDTCCKLFQSVIETPERLVSRGYLGIDTPSFGSDGFRLSDLVRAYSEYYERNFTDFSFSLRFLRGYRTRDYSDELIFREARLFDGYVFNKDMIFGRLYRLFAKVLRCFRFWNLKQYTDSWSLKAAVKKIWSYGWEYWKKKEYRFLTTYFEYLEGCNDDERLFLLVRTSGSGLATDSPHSWTYTQREDYVNCLPDDLYKRYMKTLKWLTARTEKVLKDKVKHKEFNDMQGVLLFSD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_021963494.1"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /db_xref="InterPro:IPR021723"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(6366..6557)
                     /locus_tag="Alpa_06"
     CDS             complement(6366..6557)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MEKQVLKKEEKTFVNGFIVSVQLPGVPPKQSFVDTSSSLAETVASILDSTPHAIILVQASVNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(6574..6738)
                     /locus_tag="Alpa_07"
     CDS             complement(6574..6738)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="LIATFVIGVITTLFVHSCTLSLSVAKNNTNSTQKTEQTSTSSVDSTRININSKY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="protein motif:SignalP:4.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM
                     Signal peptide predicted by SignalP 4.0 (Signal peptide probability ) with cleavage site probability  between residues 17 and 18"
ORIGIN
        1 taattttcaa taagttagtt tttttagaca tgacaaaact aataaaaaat aatcgtgatt 
       61 agcaaattta ttaactatta ttatgaataa agcaatgtat tagggggtgt gtcatttttc 
      121 gtatatatga caaggataga gagtaattac taagataaag taattaccct tcgggaaaaa 
      181 tgaaataggc ttcgccaaga gaatttttta aattatacag ggggggatag tcagtatgat 
      241 taggagagac agcaacctta aaaaagagat tagggacaga agtgttcgct aaagcgaatg 
      301 cgcctttggc gatatcaagg tgctaacgct ctagggcaaa gccctagaac cctttttttg 
      361 tcgctcgcgc tgtacacgca gtttcactgc tatcggcaat aaaggggagg tggaaaatcc 
      421 aacaaagttg gagagacgtc ccgaaaagga gttaacgata aaaaaatgta tctgaatatt 
      481 ataatgagca gaaataaaaa tagtaaaagc gaacaattaa taataaataa aaaagctccg 
      541 gtgggaaatc tctataatct gaacgattat agaaacgtcc acgcggagca ataaagagta 
      601 caaaataatc actcgcgcta tgttaaggat taaaagaagc acaactaata gagggataac 
      661 cgtgaagcat ggacataata gaactataag tcaaaactct aaaaacagaa gattgataat 
      721 taggaaaatt agaagctaaa tacgaacgaa atttacgatt agcattagaa cgaaaaccag 
      781 aataagcata aattgtaata taacctttct gataataata aacctgaagt tgataataat 
      841 tctttttcat aacaatattg gtttttgatt acaatacaaa gatagtcata atgattaaga 
      901 taacctaatc actatgacta tttaacaatg tatttaacga taattaacgg aatcctttga 
      961 tagccttagg accacgaaga ccacgaccaa gcattaaagg taatccaata ccattaccaa 
     1021 tacgaccaat agactcaatg ccagtattcc aataacgaga actataatta tactcatcaa 
     1081 gtttaccttt ggcaacatct ccttttccac gagatttacc agcttcacga gcataaccag 
     1141 cataaccacg ggagaacatc tcatcagagg aatattgcca ttgaagagca ccaatcaatt 
     1201 gatcagcagt ttcagaagca accttattag aaatcttctt accttcagtt tcagccatat 
     1261 tcataagttg tttagtaact tcagtcttac attgctgaag agacaaacgt ccagaagcaa 
     1321 aagcctgaaa agactgatta gccaacaact tcaattgcaa ggattgagaa gaatccaaat 
     1381 acttattaat aatacgttta gcctcattag ataaaagaat atcagtgcgc tgagcacgtt 
     1441 gaattttatt ggtccattgc atattctcaa gattttgccg atcagtattg aaagacaatt 
     1501 gagcacgaga cataccagta gtttgtaacc aattccgata ctcaggagtt aacttatacc 
     1561 aatcaatatt agagaggata tcagcagcat tagcatcagc caaagacttt tgtccttgaa 
     1621 gattaaaaac ctcggcatta gaaacattag tagcattatc catctgaata gccgtagaca 
     1681 aagcattctg aataccatca aattgcatgg gattattctg aataggagga gcagcagaag 
     1741 ccggagaaga tgatccgata ctttgagcag ttccaacatt agaagaatcc attcctaaat 
     1801 aaggattata gccagcttct tgaagacgct tacgaatatt cttaggagaa ttccactcat 
     1861 tagtcttatt ccacatttca gtctgatatt gacgagcctt ttctgcttct ctagcattaa 
     1921 actcattatt catcttattg atctgcatat tcttcgaatt agaagaagaa gtaccaaaaa 
     1981 gattgccaac cagtgaagca gcaccggaag caagaccagc agcaactaaa ggaggaatgc 
     2041 caaactgaac aaatgaatta ttattcagct gaatcaggtg atccagcaga agcactacta 
     2101 ccaacagtag aagcggcggc agcggcagca atttcctcat catatttttt acgaatttcg 
     2161 gcaccaacac gagtttcaag ttcatgagct acctggatta aactttcaga ccaagcaagg 
     2221 atctcagaag gagactgtaa atgacgagac ttaacagtat ccaaaagaag ctgatcatcc 
     2281 atttgatcta actgagattg aatagcagac gtcttagtcc tacgagattc agaaagataa 
     2341 cgcaatcctt caataccaat cttattagca gtatccttag catgaagcaa catagaaata 
     2401 tcggaacgat aacggtaata tttatcagga ccttcgccaa tagtttcaat acaaaactta 
     2461 gaaaccggat caatttcaac agctatttcc ttttcgcgaa cagcgggatt aaaaccaaca 
     2521 gcagaaatag aaggatctac cttacggaaa ccacgaccaa aacaaacttt atttgaaatt 
     2581 ttattttcca taataaataa tattaataag gcataccatc ctgagaaaga ggacgaacaa 
     2641 ccttacatga aacatcacaa ttaattaaaa gctgatcact ttcccaagta gaatcagcag 
     2701 caacagcaaa aatagaatcc aaagtattag gatttacctt gaagaacggc caagaaatag 
     2761 aagcttgtga actaccacct gaagcaaacc acctattcaa ataaaaatca tcaataggag 
     2821 caacccaatc cttaagggta gtaagaaatg caccatgaac acgatcaatt ttagatttcc 
     2881 acggccaata acgagggttg taacctagaa agtcaaaatc agattcaaga tcattgtcaa 
     2941 atgcattcga attaaacaaa gtgatagcag gtacagcttc cattccaata ttatcaaatt 
     3001 caggaatagg aagatcctct acagaagtac aaagaagttg agaatcctga ccactaatag 
     3061 cgtaatccaa aagaggtaca gcatggtaaa tacacattat aatacaatac tgagaaccag 
     3121 tatgataacg cattttacca gaaccagtac ctacaccttt accataaata actgcttcag 
     3181 aaccagtttc agaaaggtta ttattaacta cttcggaaat atcaagatta cgggcaatac 
     3241 caccaatata ttgtgccatg tgagacatag aagcaggagt attaatacca aaatgagcct 
     3301 tgatctgatc acgatagtta gtatctacag attgagtaat ttctttccat ttctgaagag 
     3361 cttcagcctg acgaagggca agaatagaaa attcacctcc taaaagagaa cgcacaccta 
     3421 gagcagaacc ggcaacagaa gaagggatac cagaaccacc agcaacgcga attcgagaag 
     3481 gagttgtact ggaagtcata gcatcatcag tataaacagg agtatgagtt ccagttaaag 
     3541 gaggtttagc aatattagtc tcattaatag aattaaatac ctcgacagga acaaaagtat 
     3601 caataccttc tacacctgag actacagcga catcaccgaa ctgggaatta ggaagaagac 
     3661 ccataaacat gtctttattc cagttacaat aacggagaga aaacatatta tcacgtttcc 
     3721 aataatcatt agatgatgga atagaagaag caataccacc attaccaaac aaattaccag 
     3781 aaccgttata ataatctaca ttataagccg taggatcagc attttcccat tgagaccaac 
     3841 gaaagaaatc ttgataaatt ttctgataag ctaaaagagg aaaaagggaa acagaaacat 
     3901 tctgggaata cttctgagaa taattttgaa cagcagaaga cgtaaaagat gtattaaacc 
     3961 atcgatttgt agaagttcca acatttgaag aagatggttc tacaaaatta ccataattaa 
     4021 ggtataataa aagcttatga gaagtatcac aacgagaata accaaaaata ttagaataat 
     4081 ccggaacaac agaaacagtt tgacccaacg aaactctatt attcataaaa attaaagaag 
     4141 tgtataaatc actcaaagta caccaaggaa tatcagttcc aacagtaaga ggatcgagtg 
     4201 gagttttagc ttggacagga gcaacttcgc ccatctgaat cacagcagaa tcaaatgatt 
     4261 tccaaagaag atcacaagga actgcataaa aatcaaaata ctcacgaata cgagtataag 
     4321 cagccgtttg aacaggacgg gttcgagtaa aataagctaa atcaatatca taatcacaac 
     4381 taggaattgc aaagtcccaa taaacgggaa gcaattcacc tactttagca gtaaaaagat 
     4441 ttttactacc aatatcaaaa ccagccttat gaggatgatt ttgaagttct tttaaaccag 
     4501 taaaatgtgc cataaatcaa attagttaat cagaaaataa taaaacacct tgcatatcat 
     4561 taaactcctt atgtttaacc ttatccttca gaaccttctc cgtacgggcg gttaaccatt 
     4621 taagagtttt catataacgc ttataaagat catcaggaag acaatttaca taatcctcac 
     4681 gctgagtata agtccaagaa tgaggagaat cggtagcaag accagagcct gaagtgcgaa 
     4741 caagaagaaa caaacgttcg tcatcattac atccttcaag atactcgaaa taggtagtca 
     4801 agaaacgata ttctttcttt ttccaatatt cccatccata agaccaaatc ttcttaacag 
     4861 cagcctttaa agaccaagaa tcagtatatt gttttaaatt ccagaaccta aaacaacgga 
     4921 ggactttagc aaataaacga tacaacctac caaagatcat atctttattg aatacataac 
     4981 catcaaagag acgagcttca cggaatatca attcatcaga gtaatcacga gttcgataac 
     5041 ctctaagaaa acgaaggctg aatgaaaagt cggtaaaatt ccgctcatag tattcagaat 
     5101 aagcacgtac gagatcagat aatcgaaaac catcagaacc aaagctagga gtatctattc 
     5161 caagatagcc gcgcgaaacg agacgttcgg gcgtttcaat gacagactga aataacttgc 
     5221 aacaagtatc actatctgag aaaaaatcat tagagaatcg ggggaatacc gcaagctcac 
     5281 acgaccgtac aggcctgata ttgataacct tgccattaga atcgacgtta acgccatcaa 
     5341 agaagagatc ggatatcttt gaaatttctg aaacgtcgga cgatttagga aagattttat 
     5401 tcgagccaaa tcccttggaa tggaaggatc gaggacggat ttctttttgt ccaacataaa 
     5461 agaatggtaa acaagcagca ctattaacgt atgacgcaac ataggaagca gcggctccac 
     5521 gggagagaga gtaatcgata cgaccgtagg cccaagcctt agatatatct tctcgaagcg 
     5581 tttgggtgat ctcctccgag ttaaagaata ataaacaatg ccaatgcgga cggtaggttt 
     5641 gaggtccgta ttctgataca acgtagtaac atattttcga ggaagtgaat ccatgtgaat 
     5701 ctaaatttct tcttaaacgt ttaaaaaaca attcaatatc gcgagactga agaacaggaa 
     5761 tctgtaactt acaatcagca agagagggat aaactacctt tttcttacca taatcataac 
     5821 gaccattagc cttaattaaa atgtcttgaa gttcggtaag cttcataggt atacagaatt 
     5881 taagaggttc gtcatcaaag gaacgaaaac gaaatgatcc ttttgattta acagaaacat 
     5941 cacgaggaat agactgaaaa cctatatcaa aaacttgctc aacttcattc tgagccggat 
     6001 caagagaaag atcgcgatca tgataatatt caggagttaa aagtcgaggg tcggaggtgg 
     6061 aaaccatcgt ctcaaagttt tcatcaaaaa gataacgatt accagacctt cgaacaacct 
     6121 cgaccgacaa gtaaggaaga aatatatctt tatatgtaag agtaacgaaa taacaatact 
     6181 taaaatgagt agccatattc atagcataag ccgtagcaaa attcgactta ttcataatac 
     6241 atgacttaca acgaccacac ggggcaaaga taacatcatg agaataaggg tttacaattc 
     6301 tctggggtcg aagacattca gtaaaaaggt acttcgttaa taattcttcc ttaggtatca 
     6361 tactatcaaa gatttacaga agcttgaacc aaaatgatag catgaggggt agagtcaaga 
     6421 atagaagcaa ctgtttccgc caaagaacta gaggtatcta caaatgactg tttcggtgga 
     6481 acaccgggca attgaactga aacaataaaa ccattcacaa aagttttttc ttctttcttc 
     6541 aatacttgct tttccataac aataaaattt aaattagtac ttggaattaa tattaatacg 
     6601 agtagaatct acagaagaag tagaagtctg ctcggttttc tgagtagaat tggtattgtt 
     6661 cttagcaaca gacaaagaaa gtgtgcaaga atgaacaaac aatgtagtaa taacaccaat 
     6721 aacaaatgtg gcaatcaatt taacgatttc 
//
