FEATURES             Location/Qualifiers
     gene            complement(967..1290)
                     /locus_tag="Alpa_01"
     CDS             complement(967..1290)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MKTAINRKGCINNPDLTYQAEPREVKLRKIISGESSSMEDGVFPTIYTEKKDGVLPEFDIRTDRFEIAIDAMDKINQSAASQIAKSSGETEAVKDFGTETKTDPEKS"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1295..3340)
                     /locus_tag="Alpa_02"
     CDS             complement(1295..3340)
                     /product="capsid family protein [Parabacteroides distasonis str. 3999B T(B) 4]"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MKKTLGGDRIRSESKMEVYLPNFGRSSHNVGKIIRTSQACGTIVPYWCQIGLDGTTFYIDITTKVKTLPTTGPVFGSFKHQIDVFVIPIRLYIAALHNNALGVGLNMSKVLLPQFRVSTAVASIYENDTNRGQVNPSSLLSYLGIKGFGYSKTNSHIRTFPAIFNLAYWDIFKNYYANKQEENAYVITGINHIWKKISAGDGVAWNREWTENSSEAYPLNPSSQAPSFIKLEFEEKISPEEVNEIQFLTNDPEKPSQKINKLTKLGNAFIFERTDPEAMGLKKPDNPKRATNIYVYQVKKPIYLAYNMNIAGNNYLTMPDNKKIKLTPFPLKNIDQERNKILAAPSTSAYVVEGATMPYGAATKTIGLPSYDRREKYNSSNAWYSQAGLAVKTYLSDRFNNWLNTEWIDGTTGGINSITAVDVSDGKLTMDALILQKKIFNMLNRVAITDGTYQAWREATYGIRSATLPESPIFCGGMQSEIAFDEIVSNSATEEEPLGTLAGRGVATMYKSGRGLKIKCTEPSMIMALGSITPRIDYSQGNKWWTRLQNMDDFHKPTLDAIGFQELIAEEAAAWTTEATDDHELVYQSLGKQPSWIEYTTDVNETYGEFAAGMPLAFMCLNRVYEENSDHTIGNASTYIDPTIYNSIFAESRLSSQNFWVQVAFDVTARRVMSAKQIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:KDS63784.1"
                     /inference="similar to AA sequence:INSD:WP_005867318.1"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3344..3649)
                     /locus_tag="Alpa_03"
     CDS             complement(3344..3649)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MEKKFRDQLLAESGKEEEEIKDVNLEIEEREVSENGPFVLIRNKKNKWVITTCGALVNGKEFDTKEDAEKHLAKKEWDDILTAALIFFTHVKNQMENTQKE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3651..3821)
                     /locus_tag="Alpa_04"
     CDS             complement(3651..3821)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MNEKVKKIVKWIAVIAAAIGAAAAVILEQGCTHKHTLKANGIKIDTIKVETSTRIK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 24 and 25 "
                     /inference="protein motif:TMHMM:2.0"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3818..4174)
                     /locus_tag="Alpa_05"
     CDS             complement(3818..4174)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MGSGIHNQKDRRHLNAKQDFKAYKNRGGIGDRAENLRELIGLERVVRQDFGYEGTYYVTEDGETYDEEYVDAHNPRKTGVKFYEVSNWRYNRKKGIYEPVIRRIVMIEIKEIQLTLEL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4223..4939)
                     /locus_tag="Alpa_06"
     CDS             complement(4223..4939)
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="VRLMEEIKSNPKNIIFATLTFSEESLKKLEYDEKEPNKAPQKAISLFRKRWWKKYKEPLKHWLITELGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWIFFGYEVNERTINYIIKYITKRDEANPEFNGKIFTSKGIGKEYIGENSLRRHRYQDRFTEETYRTNSGIKIALPTYYKQKLWTVQEREALRIIKEEKQVKYYNKTPIRVETIEQYREYVNAVKYWQSIKKYDGKRKKGNM"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5131..5454)
                     /locus_tag="Alpa_07"
     CDS             complement(5131..5454)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MAQAAYYYAAGETQKAEAKMLEVKKRTEEATAELRELQYWTEIANTIIKLAQVVGNLTIGGKTGKLIREYTEKRMSETPPKNSTTVTQHFDPEMQFKGVDKTVTTKW"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 gtcttgatcg ccgccgttcc ctcgaggatc tgtttttcag ctgtcatcat accgccttgg 
       61 aatgattcct ctccgaatac aattttgccg aatttgtcat cttctatctc gaagtacttc 
      121 ggtatttcga cttccttgcc gtcgattgtt gttttctctg taggctgcca ttttaccatc 
      181 tggtcccaca gctggtttgc tgtgtcaatg aagcctttcc atcctttaaa catttcttgc 
      241 tttacctccc atatcctttt atcgattatt gtttgggttt cctctttgtt tttacccgct 
      301 tctgccttga gtgcatctgc ctgagtatta agtaggttaa tttctgcttc gttctttcgc 
      361 tcgctcatcc gcacctgtcg tagtgacatt aatgcttgca gctgcatatt agggtcggca 
      421 gctgaacctg caccggcagc acccgttgcc cccatggggg cgcccgtcgt cgatcctgcc 
      481 cccccaccgc tggccccgcc tccgccatac attaggcctg gagacaatcc tgctgcatcc 
      541 atttgtgcga ctttgttagc gtagctttgg tcttggtagg ttctgtcgta taatacctgc 
      601 tgcctttcga acgcattctc cgctgccatt tctccgtatt tgtagtttat tttggctgcg 
      661 ttctccatca tttctttttg ctgccttatc tgttttttcc tgcctacgcc cagcatgttg 
      721 aggattcctg atgcgccgcc tattattccc gagagagggt ttgtaagatt ctctcctttt 
      781 tcgagtaatt tcaatagatc ttcgaatttc attttcgttc tttttttaaa aagaatttat 
      841 acttatgttc ttgttatata tgtataaacg tctaccgctc tgtgccacac gcatttgcga 
      901 gggttaaaag aggggggcgg aattatcccc cctctttgag ttttggtaga gctttatacg 
      961 actgctttag ctcttttcgg gatcggtttt tgtttctgtc ccgaaatcct tcacggcttc 
     1021 ggtttcaccg ctgctttttg caatttggct tgctgcgctt tgattaatct tgtccatcgc 
     1081 gtctatcgct atttcgaatc ggtctgttct tatgtcgaat tctggtagca caccgtcttt 
     1141 tttttctgtg tagattgttg ggaatactcc atcttccatg ctgctggatt ctccgctaat 
     1201 tatttttctc agttttacct cccttggttc tgcttggtat gtgaggtctg gattgttgat 
     1261 gcatcctttt ctgtttattg ctgttttcat ggtgttataa atttggaatt tgttttgctg 
     1321 acattactcg gcgcgctgtt acgtcgaatg ctacttgtac ccagaagttc tgcgaactca 
     1381 gtcttgactc tgcgaatatg ctgttgtata tcgtaggatc aatgtaggtt gatgcgttgc 
     1441 cgattgtgtg atccgagttt tcttcgtaca ctctgttcaa gcacataaat gctaatggca 
     1501 ttcctgcggc aaattcgccg tatgtttcgt ttacgtctgt tgtgtattcg atccatgacg 
     1561 gctgttttcc taatgactga tatacgagtt catggtcatc ggtggcttct gtagtccacg 
     1621 ctgctgcttc ttctgcgata agttcttgga acccgatcgc gtccaatgtt ggcttgtgga 
     1681 agtcatccat gttttgcagt cttgtccacc atttgttgcc ctggctgtaa tcaattcgag 
     1741 gtgtgatcga tcccaaggcc ataatcatgc tgggttctgt acatttgatt ttcaagcccc 
     1801 ttccggattt gtacatggtt gcaactcctc gtccggcaag tgttcccagt ggttcttctt 
     1861 ctgttgctga gtttgatacg atttcgtcaa atgcgatttc gctctgcatt ccgccgcaga 
     1921 atataggtga ttcaggcagt gttgcgcttc tgattccgta tgtcgcttct ctccatgctt 
     1981 ggtaagtacc gtctgtgatc gcgacgcggt ttagcatatt gaagattttc ttttggagga 
     2041 tcagagcatc cattgtgagt ttgccgtcgc tcacatctac ggctgtgatt gaattgattc 
     2101 cacctgttgt tccgtcgatc cattcggtgt tcagccagtt gttgaacctg tcgctaaggt 
     2161 atgtttttac cgccaaccct gcttgtgagt accatgcgtt tgaactgtta tatttttctc 
     2221 tgcggtcata gcttggtagt cctatagttt ttgttgcggc tccgtatggc attgtagcgc 
     2281 cttctactac atatgctgag gtactgggtg cagctaagat tttatttcgt tcttggtcga 
     2341 tgttttttaa tggaaatggt gttaatttga tttttttgtt gtccggcatt gtcaagtagt 
     2401 tatttcctgc tatgttcata ttgtatgcaa ggtagattgg cttcttgact tggtacacgt 
     2461 aaatgttggt cgctcttttc gggttgtctg gttttttgag tcccatcgct tccggatctg 
     2521 ttcgctcgaa aataaaggcg tttccgagtt ttgttagttt gttgattttt tgtgaaggtt 
     2581 tttccggatc attcgttaag aattgtattt cattgacttc ctcaggtgat attttttcct 
     2641 cgaattccag tttgataaaa ctcggtgctt gacttgacgg attgagtggg tatgcttcac 
     2701 ttgagttttc tgtccactct ctattccaag caactccatc tcctgcactg attttcttcc 
     2761 aaatatggtt tattccggtg attacgtatg cgttttcttc ttgcttgttg gcgtaatagt 
     2821 ttttgaatat gtcccagtat gccagattga atattgcagg aaaggttcga atgtggctgt 
     2881 tggttttgga gtatccgaat ccttttattc ctaagtatga gagcagcgaa ctcggattga 
     2941 cttgccctct gttggtatcg ttttcataga ttgatgcgac agcggtgctg accctgaatt 
     3001 gcggcaacag taccttgctc atgttcaacc ctactcccag agcattatta tgcagtgctg 
     3061 ctatatagag tctgattgga attacgaaca catcgatttg atgtttgaag cttccgaata 
     3121 caggcccggt tgttggcagg gttttcacct tcgttgtgat gtcgatgtag aacgtcgttc 
     3181 catccaaacc tatttgacac caatagggaa cgatcgtgcc gcatgcctgt gatgttcgga 
     3241 ttatctttcc tacgttgtga gacgatctgc cgaaattagg cagatatact tccattttgc 
     3301 tttcgcttct gattctgtct cctcctaatg tttttttcat ggtttattct ttttgagtgt 
     3361 tttccatttg gttttttacg tgcgtgaaga atatgagcgc tgcagttagg atgtcatccc 
     3421 attctttttt agccagatgt ttttcagcgt cttctttagt gtcgaactct ttcccgttta 
     3481 cgagtgcgcc gcatgttgtg atcacccatt tgttcttctt gttgcggatc agtacgaacg 
     3541 ggccgttttc cgatacttct ctttcttcga tttcgaggtt tacatctttg atttcttctt 
     3601 cttcttttcc gctttcagca agcagctgat ctctgaattt cttttccatg ttacttgatt 
     3661 cttgttgatg tttctacttt gattgtgtca attttgatgc catttgcttt gagggtgtgc 
     3721 ttgtgagtgc atccctgttc caggatcacg gcggctgccg cgccgatcgc agctgctatt 
     3781 actgcgatcc attttacgat tttctttact ttttcattca tagttctaat gttagttgga 
     3841 tttctttgat ttcgatcatt actattcttc tgatgacggg ttcgtatatt cccttttttc 
     3901 tgttgtatct ccagttgctc acctcgtaga atttaacgcc ggtttttcgt ggattatgag 
     3961 catctacata ttcctcgtca tatgtttccc cgtcttctgt tacatagtat gttccttcgt 
     4021 atccgaagtc ttgtcgaact actctttcca ggccgatcag ttctctgagg ttttcggctc 
     4081 tgtctccgat tcctcctctg tttttgtagg ctttaaaatc ttgtttcgcg ttaagatgtc 
     4141 ttctatcttt ctgattgtga attccacttc ccatatttca cgaattagtt tttctttctt 
     4201 tatgattaag tctgcatagc ctctacatat ttcctttttt tctctttccg tcatattttt 
     4261 tgattgattg ccaatatttt actgcgttta cgtactccct gtattgttct attgtttcta 
     4321 ctctgatagg agttttattg tagtacttta cttgtttttc ctcctttatg attcggaggg 
     4381 cttcgcgttc ctgaactgtc cataattttt gtttgtaata cgttggtagt gcgattttta 
     4441 ttcctgagtt tgttctgtat gtttcctccg taaatctatc ctggtatcta tgccttctga 
     4501 gtgagttctc gcctatgtat tcttttccga tcccttttga agtgaatatc ttcccgttga 
     4561 actcaggatt ggcctcgtct ctcttcgtta tgtattttat gatgtagttt attgttcttt 
     4621 cattcacttc gtatccgaag aatatccaac catatcccca ttctttttcg aattgttcct 
     4681 ctgttaattc tgtccatata atgccgtgta ggtgtattct tttggtgttg tcatgtccta 
     4741 gctctgtgat cagccagtgc tttagtggct ccttgtattt tttccaccat cgctttctaa 
     4801 ataggctgat tgctttttga ggtgctttgt tcggttcttt ttcgtcatat tccagctttt 
     4861 ttaggctttc ctcggagaat gtcagcgttg caaatataat gttttttgga tttgatttta 
     4921 tttcttccat taatctcact ctccattcat ttgcttttgc gcgtctgcat tcttcgcagt 
     4981 gcccgcatgg aatttgaatc catcttaggc gataatcctt tattcttttg cggttttcat 
     5041 ttgatttggc gtatcttggg ttctcaatga tacttggata taggcacatt ggttttattt 
     5101 gaaattttcc ctcttaaaat catttttttc ttaccatttt gttgttactg ttttatccac 
     5161 tcctttgaat tgcatttccg gatcgaaatg ctgtgttact gttgttgagt ttttgggggg 
     5221 tgtttcgctc atcctttttt ctgtgtattc tctgattagt tttcctgttt ttcctccgat 
     5281 cgttagattt cctactactt gtgctagttt aatgatcgtg tttgctatct cggtccagta 
     5341 ttgaagctct cgcagttctg cggttgcctc ttcggttctc ttttttactt cgagcatctt 
     5401 tgcttctgct ttctgggtct cgcctgctgc ataatagtat gctgcctgag ccatcccgct 
     5461 gcatgcatcc gcgtttatct ttctgatctc tgctgatagt ttttcgtctg cgtatatgct 
     5521 ctctaaa 
//
