FEATURES             Location/Qualifiers
     gene            40..1128
                     /locus_tag="Alpa_01"
     CDS             40..1128
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MSSSRNSSINSSINNTIAESILLRAKSPTISIHIILKILQIKFHIFFANFLAGHPDNTLNLSFLVDNRNINLRIPIHIKPVLQIICRQFIHTGQLLLIRSRRLQINSPDSQQLQFFFNQLINITSTSLKLVILLLSLTKISLNHLKIITESSIFQLIINRIGQSYGSIQTCTRSRFSDSCFSKSCLSLHKTFTQIFIQSLGPIPISLSIIKRSRRTLTLLLSIFQLNIRIRRRIPSQSSKTTTGTRSNRTMSRGSTTTGSRNSSRNTNSRLAKNSSRIQTSRKITLKNSSRIIIRILIIKHLLVMGQLKFRRLRHLFEGILLLQCHFLLLILPITTSRNTTEQSISNTGTSRRTCRTGCIHA"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="4 probable transmembrane helices predicted by Phobius with cleavage site between residues  and  "
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1169..1369)
                     /locus_tag="Alpa_02"
     CDS             complement(1169..1369)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MVSYCCFVMEKVPFYRKKSFWTLLISILTALSVYFAASCSRKVFYRSSGIHCDTVEVDVRSNLKLP"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1644..1937)
                     /locus_tag="Alpa_03"
     CDS             complement(1644..1937)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MLEYMIEDLPEYRSRGERIMSVLNGSGSVEVLPGRPDVQASDSDFRKGEDYDPPLDFDPNSFSRIDKFDGLESGQGVIDDFLERQRSSSSAKSEKDD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1939..3882)
                     /locus_tag="Alpa_04"
     CDS             complement(1939..3882)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MGKQPFISHSVNGYSRYDMPESKAFSITPGIIYPVRIQFVNARDRVTLHQGIDIRSNPLGVPSFNPYVLRLHRFWVPLQLYHPELRVNSSKFDMNNLTYNFIPGVVDCAGAGSYTSCMYPRSGTAAFFSQVMPFNHRAALPNSLMSWLRIANSPIFCYSGKPLPVSTCLLKTAPKFLSVNADTYLGYWDIVRNYYSYSSWGVFSFAHPGTYRPVFYTTPTSSVTKVEYRSQASYFWQRYGNLEFLDHYFETMFYPRDRKTPDDRDELSWNRSDLFVEILRSDLFNEDTIAASPDFTNLVQLFPQGINCRVPAHPYDVQEPKVDWNNGTGTDVNIPSKVYFSATLNVPFLAAHPMAVCPSSPDRFSRLMPPGDSNSDVDFTGVKTIPQLAVATRLQEYKDLIGASGSRYSDWLYTFFASKIEHVDRPKLLFSSSVMVNSQVVLNQAGQSGFEGGESAALGQMGGSISFNTVLGREQTYYFKEPGYIFDMMTIRPVYFWTGIRPDYLEYRGPDYFNPIYNDIGYQDVPLWRLGYGWKADTVSSLSVAKEPCYNEFRSSYDEVLGSLQATLTPKASTPLQSYWVQQRDFYLIGLSSNPNEVSPSMLFTNLNTVNNPFASDMEDNFFVNMSYKVVVKNLINKSFATRLSSR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3875..4879)
                     /locus_tag="Alpa_05"
     CDS             complement(3875..4879)
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MNRPWDYFTQRIMVPCGRCEECLRQQRNDWYVRLERETKYQKSLHRNSVFVTITIAPEYYDSALLNPSSFIRMWFERIRRCFGHSIKHAVFQEFGMHPEQGNEPRLHFHGVLWDVSYSYNAIREAVKDLGFVWISSITDKRLRYVVKYVGKSVYMDDSSAVFAKSLPITVGKLNTNLYDFLQNRKYRRKFVSPGVGDYLGDFKAPGVTSGLWSYTDYRTGVVYRYRIPRYYDKYLSQDALFFRKISTAWTYACVFGSSLALGFLREVAQRVLRPSSFSRIVKGGFSRLVKLREFLSKVKFSQRFIAVVPDVIDFWVDCFGVNSSNPFFNKIVYG"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4920..5132)
                     /locus_tag="Alpa_06"
     CDS             complement(4920..5132)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MSFDYFHRFELAYSPFFVRKRVGKRFTVIFRFRTYEQASDCLRFLLENYPGIYFDIKDVSFSHLDKKSSL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5184..5483)
                     /locus_tag="Alpa_07"
     CDS             complement(5184..5483)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="LVSFGHDEPDGSFKNYDPVYSLDFESSKLSKFLEFSSIFLPRGCYYLPEMELAGFIRSLSSDVSFFEMKLLPASAQLQGLLLVKVDEESLSKYEQEEED"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 cacaggagga gctgtagaaa gaactttggc tccgacaaca tgtccagcag cagaaatagc 
       61 tccattaaca gcagtattaa caatactata gccgaatcga ttcttctcag agcgaagagc 
      121 ccaacgatta gtatacatat catattgaaa atcctgcaaa tcaagtttca tatattcttt 
      181 gcgaatttcc ttgccggtca tcctgacaat acgctcaacc tttcctttct cgtcgataat 
      241 aggaacatca acctgcgtat tccaattcac atcaaaccag ttctccaaat catctgccgt 
      301 caattcattc acacgggcca actgctcctg attagaagca gaagacttca aataaatagc 
      361 ccggacagtc aacaactgca attctttttc aatcaactca tcaatataac cagtacgagc 
      421 cttaagctgg taatactcct ccttagcctt accaagatta gccttaatca tctcaagatt 
      481 ataaccgaaa gcagcatctt tcaactcatt atcaatagaa taggacaaag ttatggcagc 
      541 attcaaactt gcacgcgaag cagattcagt gattcctgct tcagcaagtc ctgcttgagc 
      601 cttcataaga cgttcacgca aatctttatc caaagtctgg gacctatacc aatcagcctc 
      661 agcatcatta agagaagccg ccgaacgctc acgctcctgc tgagcatctt tcaactgaac 
      721 atccgcatac gcagaaggat tcccagccag agcagcaaga ccaccaccgg aaccagaagc 
      781 aacaggacca tgtccagagg gagcaccacc actggaagta ggaatagtag cagaaacacc 
      841 aactccagac tggccaagaa cagcagcagg attcaaacca gcagaaaaat tacgctcaag 
      901 aacagcagca ggatcattat acgaattctg ataatcaaac atctgcttgt catgggccaa 
      961 ctgaaattcc gcagacttag acatttgttc gagggcatac tgctgctgca atgccatttc 
     1021 cttctgctta tacttccaat tacgacgagc agaaatacca ccgaacaaag catcagcaat 
     1081 accggcacca gcagaagaac ctgcagaact ggctgcattc atgcctaacg actggcccat 
     1141 cagagcaaga aaaggagcag caggcatact acggaagctt taaattagac cgaacatcaa 
     1201 cttcaaccgt atcgcaatga ataccagaag aacgataaaa aaccttccga gaacatgaag 
     1261 ctgcaaaata aacagataaa gcagtaagaa tggaaatcaa cagtgtccaa aaacttttct 
     1321 tacgataaaa cggtactttt tccataacaa aacaacaata agaaaccata agaaaatacg 
     1381 ctatcaaaac cgcaatttga tatccaaatt tgatgttcaa agcaaacatc aaaatcggtc 
     1441 cgcgcacata tcatatatca tctagtaaag ggatatgtaa ttttctttta aaaataataa 
     1501 atttatacgg gcagcacgcc gactccgtcg acataaagtg ctgattacca aagtgctaaa 
     1561 cgctacctgc ggtgcgaggc aggaaagtgg acaagggacc gaagggaata cctaaatact 
     1621 cccttcgaga accctaaacc tcattaatca tctttctccg acttagcgct cgaagacgaa 
     1681 cgctgacgct caagaaagtc atcaataaca ccctgtccac tctccaaacc atcaaactta 
     1741 tcaatccgtg aaaacgaatt cgggtcaaaa tccaacggag gatcataatc ttcaccttta 
     1801 cgaaaatcag aatccgacgc ctgaacatca ggacgaccag gcaaaacctc tacagagccg 
     1861 gaaccattca aaacagacat aatccgctcg ccacgagacc tatattccgg aaggtcttca 
     1921 atcatatact ccaacatatc aacgactaga taaacgagtt gcaaaagact tattaataag 
     1981 attcttaaca actactttgt acgacatatt aacaaaaaaa ttatcctcca tatccgatgc 
     2041 aaaaggatta ttaacagtat tcagattagt aaaaagcata gaaggactaa cctcattcgg 
     2101 atttgacgac aaacctatca gataaaaatc acgctgctgc acccaataag actgaagcgg 
     2161 agtagaagcc ttaggagtta aagtagcctg caaagaacct aaaacctcat cataagaaga 
     2221 ccggaattca ttataacaag gctctttagc tactgacaaa ctagaaacag tatcagcctt 
     2281 ccaaccataa ccaagacgcc ataaaggaac atcttgataa ccaatatcat tataaatcgg 
     2341 attaaaataa tcgggaccac gatactccaa ataatcagga cgtatacccg tccaaaaata 
     2401 aacaggtcga atagtcatca tatcaaagat ataaccgggc tccttaaaat aataagtttg 
     2461 ttcgcgtcca agcacagtat taaacgaaat ggaaccaccc atctggccaa gtgcagcaga 
     2521 ttcaccacct tcaaaaccag actggccagc ctgattcaaa acaacctggc tgttaaccat 
     2581 aacggaagaa ctaaaaagaa gcttcggacg gtccacatgt tcaatcttag aagcaaagaa 
     2641 cgtataaagc caatcagaat aacgagaacc ggaagcaccg ataaggtctt tatactcctg 
     2701 caaacgtgtc gcaacagcaa gctgcgggat agtctttaca cctgtaaaat caacatcaga 
     2761 attagaatca cccggcggca tgagacgact gaaacggtcg ggagaactcg gacacacagc 
     2821 cataggatgc gctgccaaaa aaggaacgtt caacgtggca gaaaaataaa ctttagaagg 
     2881 aatattaaca tcggtacctg taccattatt ccaatcaacc ttaggttcct gaacatcata 
     2941 aggatgagcc ggaactctac aattaatacc ctgcggaaac aactgcacca aattcgtaaa 
     3001 atccggagaa gcagcaatag tatcctcatt aaacaaatca gaacgaagaa tttctacaaa 
     3061 caaatcagaa cggttccaag acaactcatc tctatcatca ggagttttcc tatccctcgg 
     3121 ataaaacatc gtttcaaaat aatggtccaa aaactctaaa ttaccataac gctgccaaaa 
     3181 ataagaagct tgcgaacgat actcaacctt cgtcacagaa gaggtaggag tagtataaaa 
     3241 aacaggccga taagttccgg gatgagcaaa agaaaaaaca ccccaagaag aatacgaata 
     3301 ataattgcga acaatatccc aataacctaa ataagtatct gcattcacag aaagaaactt 
     3361 aggcgccgtc ttaagcaaac atgtactaac aggcaaaggt ttaccagaat aacaaaaaat 
     3421 cggactatta gcaatacgaa gccaagacat cagactatta ggaagtgcag cacgatgatt 
     3481 aaacggcatg acctgactga aaaaagcagc agtaccggaa cgcggataca tacaagaagt 
     3541 ataacttcca gcacctgcac aatctacaac accaggaata aagttatacg tcaaattatt 
     3601 catatcgaac ttagacgaat taacacgcaa ttccggatga tacaactgca aaggaaccca 
     3661 gaaccgatgc aaccgaagca cataggggtt gaacgatgga acacccaaag gatttgaacg 
     3721 gatatcaata ccttgatgca aagtaactcg atcacgtgca ttgacaaact gaatacgcac 
     3781 cggataaata ataccaggcg taatagaaaa agccttactc tcaggcatat cataccgaga 
     3841 ataaccgttc acggaatgag aaataaaagg ctgcttaccc ataaactatt ttattaaaaa 
     3901 aaggattaga agaattaaca ccaaaacaat ctacccaaaa atcaataaca tcaggaacta 
     3961 cagcaataaa ccgctgcgaa aacttaacct tactcaaaaa ctcccgaagc ttcacaaggc 
     4021 gcgaaaaacc tcctttaacg atacgggaaa aggaagaggg acgaaggacc cgttgagcaa 
     4081 cttcacgaag aaagccaaga gccaaagaac taccgaaaac acaagcatag gtccaagcag 
     4141 tagaaatctt acgaaaaaat agcgcatctt gagaaagata cttatcgtag tagcgaggga 
     4201 tacggtaacg ataaacaaca ccggtcctat aatctgtgta agaccataga ccagaagtaa 
     4261 caccgggagc tttaaaatcg cccaaataat caccaacacc tggcgaaaca aatttacgac 
     4321 gatatttacg attctgaaga aagtcataaa gattagtatt taatttacct acagtaatag 
     4381 gaagagactt cgcaaaaaca gcagaactat catccatata aacagactta ccgacatact 
     4441 tgacaacata ccgaagacgc ttatccgtaa tagatgaaat ccaaacaaaa cctaaatcct 
     4501 taactgcttc acgaatagca ttataagaat aagaaacatc ccaaagaacg ccatggaaat 
     4561 gaagacgagg ctcattgcct tgctcaggat gcattccaaa ttcttgaaaa acagcatgtt 
     4621 taatggaatg accaaaacag cggcgaatac gctcaaacca catgcggata aaagaagaag 
     4681 gattcagcaa tgcactatcg taatactccg gggctatcgt aatcgtaaca aagacagagt 
     4741 tacgatgcaa acttttctga tacttggttt cacgctccaa acgaacatac caatcattgc 
     4801 gctgctgccg caaacactcc tcacaacgac cacaggggac cataatacgt tgagtaaaat 
     4861 aatcccaagg acgattcatc aacaaaacat tcctatctgt caaactaata gtccgtgaac 
     4921 tataagctcg atttcttatc caaatgggag aaagacacat cctttatatc aaaataaata 
     4981 ccgggataat tttctaacaa aaaacggaga caatcagaag cttgctcata agttcgaaaa 
     5041 cgaaaaatta cagtaaaacg cttgcctaca cgcttcctca caaagaatgg cgaataggca 
     5101 agctcaaaac gatgaaagta atcaaaactc atagaacctt tcctcctaaa ggacgtacaa 
     5161 cgattcgtga acctccttta cctctagtct tcttcttcct gctcatactt agacaaactt 
     5221 tcttcatcaa ctttaaccaa gagcaaacct tgcaactgag cagaagcagg caaaagcttc 
     5281 atttcaaaaa aagatacatc cgaagacaaa gaacgaatga aacctgcaag ctccatctca 
     5341 ggcaaataat aacatcctct aggcaagaaa atagagctga attccaaaaa tttagaaagc 
     5401 ttagaggatt caaaatccaa agaataaacc gggtcatagt tcttaaaaga gccatcaggt 
     5461 tcatcatgac caaaggaaac caaataacct cc 
//
