FEATURES             Location/Qualifiers
     gene            437..1150
                     /locus_tag="Alpa_01"
     CDS             437..1150
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="LTFWSKKNNFLAFEKWNALHRCKNSLYSPRRALKLFIKLFIKSLFMEKTPFYRNKAFWTLVTSIIAAFAAYFTVSCSYTQKVFRHGVHHDTVKVESVIKSRNLSCLTKNLGTPSHSLSSSNLELISWKHSSSLAPTMPSTVTTSLFGLPWQIVFGSKPQLILLSRLRCHFISPSNKDCSTPSVTVLSMSSTSQTSFSSFTLASLVLAVPLGRSRRGGRRKGKPSPKVKNIIIGGRHL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="2 probable transmembrane helices predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1183..2106
                     /locus_tag="Alpa_02"
     CDS             1183..2106
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MCNKPLRITNPHYIKLADQLGVEIPQFSNQSDYKLQVPCGKCVQCIKKRQQHWFVRAHNIYKRLGYNLSDSYFCTFTLKPEFYEAFCKEPYAFIRRFIDRMRKDPFLRYRNPDTGRFCYRKISFPYLFVLEVADGKRAAQRRLHSEHRLHLHAIMFGCPLPWWRVRHYWMSFGLAWVNPLRHFGAVRYAMKYITKKSAVHWNDIPKEILDLHGRLYVSHGFGRLSESEKDALRAYMMTGCKQWFSVLIDNHPYSIPRYYKLACFDKEQVRCRNDSLIPQLIWEYVLRTYPTYSNYKKQLIKQSILWQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2103..3878
                     /locus_tag="Alpa_03"
     CDS             2103..3878
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MMFLSRKRNKKSRFKLFSGNPTSASWGTLIPTNVTRVVAGDDFSFQPGVGVQALPIVAPFMGSVCVKKEYFFIPDRIYNVDRQLNFQGVTDTPNTVYKPSIAPPIPFDISKPSGDAISFPVSALQTSVPSGSLGAIVGPGSLADYMGEAPGSIVTGVIDLTPYVGYIDIYYNYYLNQQYDLVPTALAGTVSDSAMEYPYYLSVFELETYLRNIKTKSNFSPAIREGNSVSYSTNVKAALNAVDSEAFSWYFFAGRQSLFQRGFPSYYLEAWLKTSSFTDAAVDVSTSGNSVSMRNITFASRMQRYMDLAFAGGGRNSDFYESQFDVKLNQDNTCPAFLGSDSFDMNANTLYQTTGFEDSSSPLGAFSGQLSGGTRFRRRNYHFNDDGYFMEITSIVPRTYYPSYINPTSRQISLGQQYAPALDNIAMQGLKASTVFGEVQSLGATSPTYSNSVFAVPGFKLQDTNYVGYEPAWSELMTAVSKPHGRLCNDLDYWVLSRDYGRNLASVMDTPAYKSFVSAAGAHVEELALQRLTAFFKRIYVSPSSCPYILCGDFNYVFYDQRATAENFVLDNVADIVVFREKSKVNVATTL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 39 and 40 "
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_026318620.1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /db_xref="InterPro:IPR003514"
                     /db_xref="InterPro:IPR016184"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3891..4304
                     /locus_tag="Alpa_04"
     CDS             3891..4304
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MKTKQDYNPHVGCLYSNLSQRVGIRSCADQHASYRTRNCASRLDEFIVGARGMNEILEEYYTFGFLSCDTQAVRGDSAYDEIQPSGKDASFLSTDPSSDFSLDKFERIERIAECVGETSAERHKEELGKQNDKQNDK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:INSD:WP_026318619.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4307..5410
                     /locus_tag="Alpa_05"
     CDS             4307..5410
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MSALVTSALIAGASGLAAAGGSSIAASKMNSRAEKYNRWALKEQQRYQKEYADYMAQLEAQQNNLYWDKYNSPAAQRRARVAAGFTPYADVGGIQTSSVDPGSYGGSTPSAQSFTQPGGIPSSPLVGAFGNATQQTLSALQAEANIELTKSQALKTRAETTGLENTNSMFDVVKSIADEELTSKRFSNILKEIEVKYAEVNAITDLDTKQAKIAEINASALERLASAAKTDADRITVELLRDAQKRSLEAGASLAEAQAATEPHRALNLKQDTLLKMAQEETEQLLRSQKFELTRQQARAAAISFVQERILTYRQAEELARYLANIHDPKNMWDGIWRIVSLPAGISKSDFAADLYNALYEEINSIN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 19 and 20 "
                     /inference="protein motif:SignalP:4.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:INSD:WP_018697176.1"
                     /note="1 probable transmembrane helix predicted by TMHMM
                     Signal peptide predicted by SignalP 4.0 (Signal peptide probability ) with cleavage site probability  between residues 19 and 20"
ORIGIN
        1 ttcctcttgc agtcttaccc cgcaccgcag gtagcgacta gcacctctat aaggtgccat 
       61 ggtcgcggac ggagtccgct ggcacgtaag cgatggttta ccatcgcgcc cgtaaatacc 
      121 cattttgaga gaaggcactt tctcttgcct atatatgcca gatgtggaaa cagcgccctc 
      181 gcgaggttcc gcatcggttc tctcaaagtc ataaaaatct atgagcgaag cgaattccat 
      241 taggtgactg agagggggta cgggggagag agttaggagc cccgtgcatg agctggtctg 
      301 catccgttaa cgcgcgcgcg cgcttcgcgt gcgtgcgatg acggagctaa gtagctcagg 
      361 cacagttttg cgtccttact ttctcccccg ttatgcactt ctcaggtctt tttaattcgt 
      421 cgatttctcc gagtaattga ccttttggtc gaaaaaaaac aattttcttg catttgaaaa 
      481 atggaacgct ttgcatcgat gcaaaaattc attatattcg ccccgtaggg cacttaaatt 
      541 attcattaaa ttgttcatta aatcactttt tatggaaaaa acaccatttt accgcaacaa 
      601 ggctttttgg acgcttgtaa cgtctataat tgccgctttt gctgcctact ttactgtatc 
      661 gtgcagttac actcagaaag tttttcgtca tggtgttcat catgacaccg tgaaagtaga 
      721 atctgtaatt aaatctcgta atctgtcatg cttaacaaag aatcttggga caccctctca 
      781 cagtctttcg agttcgaacc tcgagctcat ttcgtggaaa cactcttcgt cgcttgctcc 
      841 gactatgcca tcgacggtaa ctacatctct tttcggtttg ccttggcaga tcgtgttcgg 
      901 atccaaaccg cagttgattc tattgtcgcg gctcaggtgc cattttattt caccatcgaa 
      961 caaggattgt tcgactccga gtgtaaccgt gttatctatg agttcaacat ctcagacctc 
     1021 tttttcttca tttacgctcg cttctctggt tcttgcagtg cctctcggtc gctctcgtcg 
     1081 cggcggccga agaaaaggaa aacccagtcc aaaggtcaaa aacataataa tcggcggacg 
     1141 acacctgtag ttgtagatct tgatttttag cttgtttgag ttatgtgtaa caagcccttg 
     1201 cggattacga atccacatta tattaaactt gccgaccagc ttggcgtaga gattcctcag 
     1261 ttctctaacc agtcggatta taagctccaa gtgccctgcg gtaagtgtgt tcagtgtatt 
     1321 aagaaacgcc agcagcattg gtttgttcgc gctcataaca tctataagcg tctcggttac 
     1381 aacctttcag actcctattt ttgtaccttt actctcaaac cagaattcta tgaggccttt 
     1441 tgcaaggagc cctacgcctt tattcgtcgg tttatagacc gcatgcgtaa ggatccgttc 
     1501 ctccgttatc gaaatcccga tacgggtcgc ttttgttatc gtaagatttc ttttccttat 
     1561 ctttttgtgt tggaggttgc cgacggtaag cgtgcagctc aacgtaggct tcattctgag 
     1621 catcgacttc atctccatgc gatcatgttt ggatgccccc tgccttggtg gcgtgttcgt 
     1681 cattactgga tgtccttcgg ccttgcttgg gttaatcctc ttcgccattt cggtgccgtt 
     1741 cgctatgcaa tgaagtatat cacgaagaag tctgctgtgc attggaatga tattccgaag 
     1801 gaaattttag atctacatgg tcgtttgtat gtctctcatg ggtttggccg attgtcagaa 
     1861 tcggagaagg acgcccttcg agcatatatg atgactggtt gtaaacagtg gttctctgtc 
     1921 ttgattgaca atcatcctta cagcattcct cgttattata agctggcatg ttttgataag 
     1981 gagcaggttc gctgtcgcaa cgattcttta attccgcagc ttatttggga gtatgttttg 
     2041 aggacttatc cgacttattc taattataaa aaacaactta taaaacaatc tattttatgg 
     2101 caatgatgtt tctttcgcgt aagcgaaaca agaaatcccg gtttaaactt ttttccggta 
     2161 accccacttc tgcaagctgg ggtactctga ttcccaccaa cgtgacccgt gttgttgctg 
     2221 gtgatgattt tagcttccag cctggcgtag gtgtgcaggc tcttccgatc gtggcccctt 
     2281 tcatgggtag tgtatgtgtc aagaaggaat atttttttat tcccgaccga atttataatg 
     2341 tcgaccgtca gcttaatttt cagggtgtca ctgatactcc gaatactgtt tataagcctt 
     2401 cgatagcgcc tccgattcct tttgatatca gcaaaccttc gggtgatgct atctcttttc 
     2461 cggtttctgc cttacaaaca agtgtgccca gtgggagtct tggtgctatc gtcggccccg 
     2521 gttctcttgc cgattacatg ggtgaagctc cgggttctat cgtcacgggt gttatcgacc 
     2581 ttacaccgta tgtcggttat attgatattt attataacta ctatcttaac cagcaatacg 
     2641 acttggttcc tacggccttg gctggtactg tatccgattc tgcgatggaa tatccctatt 
     2701 acttgtcggt ttttgagctg gagacctact tgcgtaatat caaaactaaa tcgaattttt 
     2761 ctccggctat tcgtgagggt aattccgttt cgtattctac gaatgttaaa gccgccttga 
     2821 atgctgttga ttctgaagcg ttctcgtggt atttctttgc tggtcggcag tctctttttc 
     2881 agcgtggttt tccgtcctac tacctcgagg cttggttaaa aacttcttct ttcaccgatg 
     2941 ctgctgtcga tgtttcgact tcaggtaatt ccgtgtcgat gcgtaatatc actttcgcat 
     3001 ctcgcatgca gcgttacatg gatcttgcct tcgccggcgg tggtcgtaac tcggatttct 
     3061 acgagtctca gttcgatgtc aaactcaatc aggacaatac ttgcccggcc tttcttggca 
     3121 gtgattcctt cgacatgaat gctaatacgc tctaccagac gacgggcttc gaggatagtt 
     3181 cctcgccgct tggtgctttc tctggccagc tttctggcgg cactcgtttt cgtcgtcgta 
     3241 actatcattt taatgatgat ggttatttca tggagattac atccattgtt ccgcggactt 
     3301 actatccgtc ttacatcaat cctacctcga ggcaaatttc cttgggccag cagtatgctc 
     3361 ctgcactcga taatattgcg atgcaaggtc tgaaggcttc gacggtcttt ggtgaggttc 
     3421 agagtcttgg cgctacaagt ccgacctatt ccaatagtgt ctttgctgtt cccgggttta 
     3481 agctgcaaga taccaattac gtcggctacg aacccgcctg gagcgaactc atgacggctg 
     3541 tctcgaagcc tcacggtcgc ctctgtaatg accttgatta ctgggttctt tctcgtgatt 
     3601 acggtcgcaa tctcgcctcc gtcatggata ctccggctta taaaagtttc gtttcggccg 
     3661 ctggagctca tgttgaagaa ctcgctcttc agcgccttac ggctttcttc aagcggattt 
     3721 atgtttcgcc ctcttcgtgc ccttatattc tgtgtggtga tttcaattac gtcttctacg 
     3781 accagcgggc cactgccgag aatttcgttc tcgataatgt tgctgatatc gtggtgttcc 
     3841 gcgagaagtc gaaggtcaat gttgcaacaa ctctctaaac ctttttcgtc atgaaaacaa 
     3901 aacaagatta taatccgcat gtaggttgtc tttattctaa cctttcgcag cgtgttggca 
     3961 ttcgttcttg tgctgaccag cacgcctctt atcgtactcg caactgtgct tctcggctcg 
     4021 atgagttcat tgtcggtgcc aggggtatga acgagatcct cgaggagtat tacaccttcg 
     4081 gctttctttc ttgtgatacc caggctgttc gtggtgattc tgcttacgat gagattcagc 
     4141 cttctggtaa ggatgcttcg ttcctttcga cggatcctag ctcggatttc tcgcttgata 
     4201 agttcgagcg catcgagcgt attgccgagt gcgtcggcga gacttctgct gagcgccaca 
     4261 aggaggagtt gggtaaacaa aatgataaac aaaatgacaa gtagttatgt ctgcccttgt 
     4321 tacttctgcg cttattgccg gtgctagtgg ccttgcggct gctggtggtt cgagtattgc 
     4381 tgcttctaag atgaattctc gtgccgagaa atacaatcgg tgggctctta aagaacagca 
     4441 gcgttatcag aaggagtatg cggactatat ggctcagctg gaagctcagc agaataattt 
     4501 gtactgggat aaatacaatt ccccggccgc tcagcgtcga gcgcgtgttg cggccgggtt 
     4561 cactccctac gctgatgtcg gaggtattca gacgtcttct gttgatcctg gctcctatgg 
     4621 tggttcgacg ccttctgcgc agtctttcac acagccgggt ggtattccgt ccagccccct 
     4681 cgtgggtgct tttggtaatg ccactcagca gaccctctca gctcttcagg ccgaggctaa 
     4741 tattgaactt accaagtcgc aagcccttaa aactcgggct gagactaccg gtttggagaa 
     4801 tacgaactct atgtttgacg ttgtaaaatc tattgcggat gaggaactta cgtccaagcg 
     4861 cttcagtaat attcttaaag aaattgaagt caagtatgcc gaggtcaatg ccattacgga 
     4921 tcttgatacc aagcaggcta agattgctga gatcaatgcg tcggctttgg agcgacttgc 
     4981 cagcgctgct aaaactgatg ctgatcggat cactgtagag cttcttcgcg atgctcaaaa 
     5041 acgctccctt gaggctggtg cttcgcttgc tgaagcccag gcggcgactg agccgcatag 
     5101 agctctcaat ctcaagcagg acactttgct taaaatggct caggaggaga ccgaacagct 
     5161 tcttcgttct cagaaatttg aacttacgcg tcagcaagcc cgtgctgcgg ccatttcgtt 
     5221 cgttcaggaa cgtattctga cctaccgtca ggctgaggag cttgctcgtt acctcgctaa 
     5281 cattcatgat cccaaaaaca tgtgggacgg tatttggcgt attgtttcgc tccctgctgg 
     5341 aatttcgaag agtgattttg cagcagacct ctataatgct ctttacgagg agattaattc 
     5401 aatcaattag aattcttgag tttatttgag cccggccgtc gctgccgggc tcctatttgc 
     5461 ttcctgaggc ttgtaacctt ctgtg 
//
