FEATURES             Location/Qualifiers
     gene            11..1360
                     /locus_tag="Alpa_01"
     CDS             11..1360
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="VFGNPNPSAYVNNVLEEIPMTYGEVNPGSIADYLGLPIGSISQSSPVSVLPFRCFALIYDKYFRNENTTDEIYIQKKGFSLSELIGAQNFSPNSYCGKLPKVNKYKDYFTSCVPNPQKGAPVTFNLGDQAVVRTSDSELVTGPQEQMALTNSQSGSASVGEHPLIVGLGGMRFDAAAFSGTVAAGLYPNNLYADLSSANAISVDDLRLAFAYQKMLERDAIYGSRYNEYLYGHFGVHIPDAYIQFPQYLGGGRTPLNIVQVAQTSQGTEESPLGNVGAYSWTNGRTGYSRKFKEHGIVMTVACLRYRHTYQQGIAKKWRRKVREDFYDPLFSTIGQQPVYTTELYAQAFPQTVFGYREAWSELRNIPNTISGEMRSGVTNSLDIWHFADNYSSSPTLSQSFTEETPSYVDRTLSVPSSSQNNFILNFYFDMSAVRKMPVYSMPSLIDHH"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65862.1"
                     /inference="similar to AA sequence:INSD:CDL65904.1"
                     /db_xref="InterPro:IPR003514"
                     /db_xref="InterPro:IPR016184"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2007..2951
                     /locus_tag="Alpa_02"
     CDS             2007..2951
                     /product="replication initiator"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MRIVMKTCTFYRFSRFDEKHRRIHYLINIRRLTPSKREITLFTGESMCLMPVKLAKYQFFVPCGKCIECRISHSIEWAYRVVAETRAHEHNCMITLTYADEYLPHDMSVSMYEMQTFLKRLRKEVQPSAIRFFGCGEYGEQFLRPHYHMVVFGHDFSDRYLFGHDKKGTKLYRSPQLEKVWPKGFSSVCEVEFDVAKYVAIYLQKPPADGRHRAFVNMSRNPGIGYQAIKPNLMETDKLYQDGKYIHLPRYYLKVLERSYPDQIADLKERRINHAISEYVEMMANLKHHITQIEYRKHRFEKIFGKPLDKNCMV"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:AGT39916.1"
                     /inference="similar to AA sequence:INSD:NP_063900.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2962..3126)
                     /locus_tag="Alpa_03"
     CDS             complement(2962..3126)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MVSATTEEVWIEPSFKAYVTEKHIKKTPHKNRVRRGKQKMKQNSVASYMFVFFI"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /db_xref="InterPro:IPR023621"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3306..3479
                     /locus_tag="Alpa_04"
     CDS             3306..3479
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MVDKLLAIEVKGSDYGHLIKRRKILYEMYLNLNRQLVSLDGVDQPSLFDEYDRGDKK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3767..4129
                     /locus_tag="Alpa_05"
     CDS             3767..4129
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="LQSCLERFIPQEDTTDEIQDNYDEYLDDLDGFTEYLDKADMYREKFNLSDELSAEEIFDHVSEQAKKLKTRLEEIEKARKESQAKKHEPVPDKSTEKPQPQPQPQPQPQPEPKKIEKEVK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4265..4495
                     /locus_tag="Alpa_06"
     CDS             4265..4495
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MVYKIYSVKDAVAGQFSEPRIFMNEGLAVRWFKNLCEKSEIASDLSLYYLGEYDLESGVISSAPEFVMNGVLEVTK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:8.Vp5"
                     /inference="similar to AA sequence:MV_prot:putative.nonstructural.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 ctttgggaaa gtgtttggta atccgaatcc ctctgcttat gtcaataatg tccttgaaga 
       61 aattcctatg acttatggtg aggttaatcc tgggtctatt gctgactatc ttggtcttcc 
      121 tattggttct atttctcaat cttctcctgt ttcggttttg ccttttaggt gttttgctct 
      181 gatttatgat aagtatttca gaaacgagaa tactaccgat gagatttaca tccaaaagaa 
      241 aggtttttcc ttgtctgagc ttattggtgc ccaaaatttt tctcctaatt cttattgcgg 
      301 taaattgccg aaagtgaata agtataaaga ttattttact tcatgtgttc ctaatccgca 
      361 gaaaggcgcg cctgttactt ttaatcttgg tgaccaggct gttgtccgca cttctgattc 
      421 tgaattagtt acagggcctc aagagcagat ggctttgact aattctcaga gtggttctgc 
      481 ctctgttggc gagcatcctt tgattgttgg tcttggtggt atgcgttttg acgcggcggc 
      541 tttttctggt actgttgccg ctggtcttta tcctaataac ctttatgctg acctttcttc 
      601 ggcaaacgcg atttcggttg atgaccttcg tcttgcgttt gcttaccaga agatgcttga 
      661 gcgcgatgcg atttatggct caagatataa cgaatatctt tatggtcact tcggtgtcca 
      721 tattcccgat gcttatatcc agttccctca gtatcttgga ggcggtcgta ctccgcttaa 
      781 catcgttcaa gtcgctcaga cttcgcaagg tacggaagaa agtcctctcg gcaacgtagg 
      841 tgcttattct tggacgaatg gtcgtacagg atattccaga aagtttaagg agcatggtat 
      901 agttatgacg gttgcttgtc ttagatatcg tcatacctat cagcaaggta ttgctaagaa 
      961 atggcgtcgt aaggttcgtg aggacttcta cgatcctttg ttttctacga ttggacagca 
     1021 acctgtttat actacggaat tgtatgctca ggcgttccct cagactgtct tcggctaccg 
     1081 tgaggcttgg tcagaattgc gtaatattcc gaataccatt tctggggaaa tgcgctctgg 
     1141 tgtgaccaat tctttggata tctggcattt tgctgataat tattcttcgt ctccgacgct 
     1201 ttctcagtcc tttaccgaag agactccttc gtatgtagac agaacgcttt ctgttccctc 
     1261 atcgagtcag aacaacttta tcctcaattt ctacttcgat atgtctgccg ttcgtaagat 
     1321 gcctgtctat agcatgcctt ctttgataga ccatcactaa ggagattatt ctatggcatt 
     1381 tggtggaccc actgtcgcgg atcgtttatt tggaacgaac ggagcgactt cgaattggtt 
     1441 tactcgtact tttgacccga ctaaggtcga aatggactat aactcggcag aggcattgcg 
     1501 caatcgagag tttaatgcgg cagaggctca aaaaaaccgt gactttcagg aaagcatggc 
     1561 caatactgct taccagagag ccgtcaagga tctcaaagcg gcaggcttaa atccgtatct 
     1621 tgcatatagt ggcagcggtg ctgcctctcc ctctggcgct acagcgagcg gaagcagcgc 
     1681 gagcgcaagc ggcggaggga ctgcccgtaa tacaacaagc ctgcttacag tacttgcaaa 
     1741 caccgcgata gccctatcga agcggtagag cctcaaaatc gccgtgtaga gccgtgaaac 
     1801 ggtgtcttgc atataactaa gcgccgatgg ctcccatcgg ccgcctgagc cccgtttttc 
     1861 gagccttaac gtaggcttga gaaatggggc tcaacactgt cgtgacaaag tcggacaaaa 
     1921 cgcgcgcgat taacgtgcgt gaaaaagtcc gacaatccca cgactaaaac agagtcaaaa 
     1981 agggcagtcc ccgccgcttg cggagcatgc ggatagtgat gaaaacttgc actttttaca 
     2041 gattttcacg tttcgatgaa aaacataggc gtattcatta cttgataaat atacgccgac 
     2101 tgacaccatc gaaacgtgaa attacacttt tcacaggtga gagtatgtgt ctaatgcccg 
     2161 ttaagcttgc taagtaccaa ttctttgttc cgtgcggcaa gtgcatagag tgccgtatat 
     2221 cccactcgat cgagtgggca tatcgtgtcg ttgcggagac gagagcgcat gagcacaact 
     2281 gcatgattac gcttacttat gccgatgagt atcttcctca cgacatgagc gtaagcatgt 
     2341 acgaaatgca gacctttctg aagcggttgc ggaaggaggt tcagccttcc gcaatccgtt 
     2401 tctttggatg tggtgagtat ggcgaacagt ttcttcggcc tcactatcac atggttgtct 
     2461 tcggtcacga cttctctgac cgataccttt ttggtcatga caaaaagggt acgaaacttt 
     2521 atcggtctcc tcagcttgag aaggtgtggc caaaaggatt ctcgagcgtt tgtgaggtcg 
     2581 agtttgatgt ggctaagtat gtagccattt accttcagaa gccgcctgcc gacggcaggc 
     2641 atcgagcgtt cgtgaatatg agtcgtaatc ctggtatcgg ttaccaggct atcaagccta 
     2701 accttatgga aaccgataaa ctttaccagg acggcaaata cattcatctt ccccgctatt 
     2761 atctcaaagt ccttgagagg tcgtatccag accagattgc ggacttaaaa gagcgtcgca 
     2821 taaaccatgc gataagcgaa tacgtggaga tgatggcgaa cctaaaacac cacatcacac 
     2881 agatagaata tcggaaacat cgttttgaaa agatttttgg aaaacctctt gacaaaaatt 
     2941 gcatggtata atataatatg ctcagataaa aaaaacaaac atgtaagagg cgacggagtt 
     3001 ttgtttcatt ttttgttttc ctcgcctcac tctatttttg tgaggtgttt tttttatgtg 
     3061 tttttcggtt acatatgcct tgaacgatgg ctctatccat acctcttccg ttgttgctga 
     3121 taccattgtt caagcagccg cgattttttc aaactactgt ctctctatgt ctttagacga 
     3181 ggtcgatgtt cttggcgtcg tcccgtcttg tggtgctgtg gattatcctt ggttgtgcga 
     3241 tgaaacggat tactgaacga gagcggattg ttcgccgcat gcaggaagtt tcccgagata 
     3301 tcgcgatggt agataaactc ctcgctatcg aggtaaaagg ctctgactat ggacatctca 
     3361 ttaagcgtcg taagattctc tatgagatgt atctgaatct gaatcgacag ttggtctctc 
     3421 tggatggagt agaccagccg tctttgtttg atgaatatga ccgaggagat aagaaatgag 
     3481 ttttgtggat tttatggcga attatggcga atacattacc ttcgccgtct atgcagtggt 
     3541 gtctatcgtc ctgtttttta ggacgaagaa cataaaatac atcaaggagt taaatgaggc 
     3601 aatgaagtat cgtaccgcaa cgtacagaga gacggaagaa tctccgtctc aagagtttga 
     3661 ccgttacaag cccgtctatc gtctgaataa ggcgacaggt gagctggaac tgaccgatga 
     3721 gcggattgac atccaggagc ttatcgatag ttgcagagac atctgtttgc agtcctgtct 
     3781 tgagcgtttt ataccgcaag aggatacgac agatgagatt caagataact acgatgagta 
     3841 tttggatgac cttgacggtt ttaccgagta tttggataaa gccgatatgt accgtgaaaa 
     3901 gttcaatctc tccgatgaat tgtcggctga agagattttt gaccatgtat ccgaacaggc 
     3961 gaaaaaactt aaaactcgcc tggaggagat agaaaaggct cggaaagaga gccaggctaa 
     4021 gaagcacgag cccgtgcctg acaagagtac ggagaagcct cagcctcagc ctcagcctca 
     4081 gcctcagcct cagcctgagc ctaaaaaaat agaaaaggag gtaaagtgat gtatcgtcgt 
     4141 cgtcgtcgtg tagtacgcgg tcgccgtggt ttttatcgta ctggtcgccg cgctcgtcgc 
     4201 cgtcgtctgc gtaagcgtat tgcttatggt ggattcagtt tgtaagtgat aaggagtatt 
     4261 tgacatggtt tacaaaattt acagcgtcaa agacgcggtt gcaggacagt tttccgagcc 
     4321 tcgtatcttt atgaacgaag gactcgctgt ccgttggttt aagaatctct gcgagaagtc 
     4381 tgagatcgcc tcggatctct ccctctatta tctcggagag tatgacctcg agagcggtgt 
     4441 tatttcgtcc gctccggagt ttgttatgaa tggtgttctt gaggtgacta aataatggcc 
     4501 cgtggacatt ctttgcagaa cgtgccgatt cctcgattcc ctcgagcacg ttttaatctc 
     4561 tctcattctg tgacgacgtc gatggacgtc ggcacgttgt accccatcga ctggcaagag 
     4621 gttctacctg gtgatgtgtt taaatgtcga gcttttgatg tttctcgcgt cacctcgtcc 
     4681 ttccttaagc cagtgatgga taacttgttg ctggatgtgt atcacttcca tatcccctat 
     4741 cgccttgtct acgatgactt tgggaaagtg tttggtaatc cgaatccctc tgcttatgtg 
     4801 cgagaaacat caaaagctcg acatttaaac acatcaccag gtagaacctc ttgccagtcg 
     4861 atggggtaca acgtgccgac gtccatcgac gtcgtcgtca cctcgagaac accattcata 
     4921 acaaactccg gagcggacgg cgagaaacat caaaagctcg acatttaaac acatcaccag 
     4981 gtagaacctc ttgccagtcg atggggtaca acgtgccgac gtccatcgac gtcgtcgtca 
     5041 cctcgagaac accattcata acaaactccg gagcggacgg cgagaaacat caaaagctcg 
     5101 acatttaaac acatcaccag gtagaacctc ttgccagtcg atggggtaca acgtgccgac 
     5161 gtccatcgac gtcgtcagtc acctcgagaa caccattcat aacaaactcc ggagcggacg 
     5221 gcgagaaaca tcaaaagctc gacatttaaa cacatcacca ggtagaacct cttgccagtc 
     5281 gatggggtac aacgtgccga cgtccatcga cgtcgtcgtc acctcgagaa caccattcat 
     5341 aacaaactcc ggagcggacg gcgagaaaca tcaaaagctc gacatttaaa cacatcacca 
     5401 ggtagaacct cttgccagtc gatggggtac aacgtgccga cgtccatcga cgtcgtcgtc 
     5461 acctcgagaa caccattcat aa 
//
