FEATURES             Location/Qualifiers
     gene            complement(298..1383)
                     /locus_tag="Alpa_01"
     CDS             complement(298..1383)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MQQQKEMMENAAQINYKYGEMAAENAFERQQVLYNRTYQDQSYANQVAQMDAAGLSPGLMYGKGGAGGGGAGSTTGAPMGATGATGAGAAADPNLQLQALMSLRQVRMSERKNEAEINLLNTQAEALKAEAGKNKEETTSIIEKRIWEVKQEMFKGWKGFIDTANQLWDQMVRWQPTEKTTIDGKEIEIPKYFEIEDDKFGKIVFGEESFQGDMMKAEKQILQGTAAIKTLESIYADEKLSAEIRKINADACSAMAQAAYFYAAGKTQEAEAKVAEARRRTEEATADLRELQYWTEIANTILKLAQVVGNMVIGGKTGKAIREYTEKKMNNTPPKNSSTVTQHYDPEMNFKGVDKTVTTKW"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1662..1985)
                     /locus_tag="Alpa_02"
     CDS             complement(1662..1985)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MKTATNRNGCINDPNLTYQAEPREVKLRKIISGESSSMEDGVFPTIYTEKKDGVLPEYDIRTDRFEVAIDAMDKINQSAANQIAKNKGETESVKNFGTEVKTDPEKS"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1990..4032)
                     /locus_tag="Alpa_03"
     CDS             complement(1990..4032)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MKKTLGGDRIRSESKMEVYLPNFGRSSHNVGKIIRTSQACGTIVPYWCQIGLDGTTFYIDITTKVKTLPTTGPVFGSFKHQIDVFVIPIRLYVAALHNNALGVGLNMSKVLLPQFLVNTANTSIYKNDTNRGQVNPSSLLSYLGIKGFGYSSVNQYVRRFPAIFNLAYWDIFKNYYANKQEENAYVVTGVNHIWKSISVGTGVNWLKTWTDNKSTAYSISPTTDSPKYIKLEFEENVSPEEVNEIQFLTNIPGSTQKVNELTKLGDSFVFERTDPDALGLREPRNPRKATKIYAYRVLKSIQIAYNADSTGENSITMPDNKKIKLTAFPLKNIDEERTAILAAPSTAAYTVPNIRMPYGAATGGLTLPNYNRTRTYVSANSWFSQAGLAVKTYLSDRFNNWLNTEWIDGTTGGINAITAVDVSDGKLTMDALILQKKIFNMLNRVAITDGTYQAWREATYGIRSTTLPESPIFCGGMQSEIAFDEIVSNAATDEEPLGTLAGRGVATMYKSGRGLKIKCTEPCMIMALGSITPRIDYSQGNKWWTRLQNMDDFHKPTLDAIGFQELIAEEAAAWSTEATGNHELVYQSLGKQPSWIEYTTDVNETYGDFAAGMPLAFMCLNRVYEENSDHTIANASTYIDPTIYNKIFAESRLSSQNFWVQVAFDVTARRVMSAKQIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_005867318.1"
                     /inference="similar to AA sequence:INSD:KDS63784.1"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4036..4341)
                     /locus_tag="Alpa_04"
     CDS             complement(4036..4341)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MEKKFRSQLLAESGKKEEEIKNVNLEIEERKVSKNGIFVLIRNKNNKWVITMCGSLVNAKEFDTKEEAEEHIAKKEWEDILTAAFIFILRINEDSKNTKKE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4343..4513)
                     /locus_tag="Alpa_05"
     CDS             complement(4343..4513)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MNEKVKKIVKWIAVIAAAIGAAAAVILEQGCTHKYSLKANGVQIDTINVETTTKIK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 24 and 25 "
                     /inference="protein motif:TMHMM:2.0"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4510..4872)
                     /locus_tag="Alpa_06"
     CDS             complement(4510..4872)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MGSGICNQKNRKHTEEEQNYRAYRDRGGIGDRSASLIELIGTERVSRRDYGYEGTFYVTEDGETYDNEYMNTHNPIRTGVNFYEVSNWRYNEGKEMYEPVIRRIVMIKIRFVEYQLSLDL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4876..5289)
                     /locus_tag="Alpa_07"
     CDS             complement(4876..5289)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="VTKRDEANPEFNGKIFTSKGIGIGYINKNSLNKHRYQDKFTEETYRAASGIKLALPTYYKQKLWTDQERESLRIIKEEQQVKYYNKTPIKVETLEQYKEYVNAVMYWQSVKKYDGKRKKGDMQRICRSDHKEGKTNS"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 cggttctttt tcatcatatt ctagtttttt taggctttcc tcggagaatg tcagcgttgc 
       61 aaatataatg ttttttggat aagattttat ttcttccatt aatctcactc tccattcatt 
      121 tgcctttgcg cgcctgcatt cttcgcagtg tccgcatgga atttgaatcc atcttagacg 
      181 acggtccctt gctcttttgc cgtttttatt cgatttggca tactttgggt tttctatgat 
      241 acttggatat aggcacacgg cttttaattg aaattttccc cctaaaaatc gttttttcta 
      301 ccattttgtt gttacagttt tgtccactcc cttgaaattc atttctggat catagtgctg 
      361 cgttactgtt gatgagttct tggggggagt attgttcatc ttcttttctg tgtattctct 
      421 gatcgctttt cctgtttttc ctccgattac catatttccc actacttgcg ccagcttgag 
      481 gattgtgttt gctatttcgg tccagtattg gagttctcgc aaatctgcgg ttgcttcttc 
      541 ggttcttctt cttgcttcgg ccacttttgc ttctgcttct tgagttttgc ccgctgcgta 
      601 gaaatatgcg gcctgcgcca ttgcgctgca tgcgtccgcg tttatttttc tgatttctgc 
      661 cgatagtttt tcgtctgcgt atatgctctc cagagtttta attgctgctg ttccctggag 
      721 gatttgtttt tcggctttca tcatatcgcc ctggaatgat tcttctccga atacgatttt 
      781 accgaatttg tcatcctcta tttcgaagta tttaggtatt tcgatttctt tgccgtcgat 
      841 tgttgtcttt tctgtgggct gccatcttac catctgatcc catagctggt ttgctgtgtc 
      901 aatgaagcct ttccatcctt taaacatttc ttgctttact tcccatatcc ttttttcgat 
      961 tattgatgtg gtttcttctt tgtttttgcc cgcttctgcc ttgagtgcct ctgcctgcgt 
     1021 attgagtagg ttgatttctg cttcgttctt tcgctcgctc atccgcacct gccgtagtga 
     1081 cattagtgcc tgcagctgca aattaggatc ggcggctgca cctgcaccgg tagcacccgt 
     1141 tgctcccatg ggagcgcccg tcgtcgatcc tgcccctccg ccgccggccc cgcctttacc 
     1201 gtacatcagg ccgggagata atcccgctgc atccatctgt gcgacttggt tggcgtagct 
     1261 ttggtcttgg taggttctgt tgtataacac ctgctgcctt tcgaacgcat tctccgccgc 
     1321 catttctccg tatttatagt ttatttgagc tgcgttctcc atcatttctt tctgctgctg 
     1381 catctgtctt ttcctgccta ggcccagcat attgagaatt cctgatgcgc cgccaatgat 
     1441 ccctgagata gggttcatca tatcgcctcc tttctcgagt aatttcagta gcttcttgaa 
     1501 gtccattttc gttcttttct taaaagaatt tataccttat gttcttgtta tatatgtata 
     1561 aacgtctacc gcgctgtacc acatgcattt gcaagggcta aaagaggggg ggcggaagca 
     1621 tcccccctct ttggtttttg gtagagcttt atacgactgc tttagctctt ttcgggatcg 
     1681 gttttcacct ctgtcccgaa gtttttcaca ctttcagttt cacccttgtt cttcgcgatc 
     1741 tggttcgctg cgctctggtt gattttgtcc atcgcgtcta ttgctacctc aaatcggtcc 
     1801 gttcttatgt catactcagg cagcaccccg tctttcttct ctgtgtagat cgtcgggaac 
     1861 actccgtcct ccatgctgct ggattctccg ctgattatct ttctcagctt cacttctctt 
     1921 ggttctgctt ggtatgtgag gttcggatcg ttgatgcatc cgtttctgtt tgttgctgtt 
     1981 ttcatggcgt tataaatttg gaatttgttt tgctgacatt acccggcgtg ctgttacgtc 
     2041 gaatgctacc tgtacccaga agttttgtga gctcaatctc gactctgcga atattttgtt 
     2101 gtatatcgta gggtcaatat acgttgaagc attggcgatt gtgtgatccg agttttcttc 
     2161 gtacactctg tttaagcaca tgaatgctaa cggcattcct gcggcaaaat cgccgtatgt 
     2221 ttcgtttacg tctgttgtgt attcgatcca tgatggctgt tttcctaatg actggtatac 
     2281 gagttcatgg tttccggtgg cttctgtact ccacgctgct gcttcttctg cgatcagttc 
     2341 ttggaacccg attgcgtcta atgtcggctt gtggaagtca tccatgttct gcagtcttgt 
     2401 ccaccactta ttgccctgac tgtagtcaat tcgaggtgtg attgatccca gtgccatgat 
     2461 catgcagggt tctgtgcatt tgattttcaa gcctcttccg gatttgtaca tagttgcaac 
     2521 ccctcggccg gcaagtgttc ccagcggttc ttcgtctgtc gctgcattcg atacgatttc 
     2581 gtcgaatgcg atttcgctct gcattccgcc gcagaagatg ggagactcag gcagcgttgt 
     2641 gcttctgatc ccgtatgtcg cctctctcca cgcttgatag gtgccgtctg taatggctac 
     2701 gcggttcagc atgttgaaaa tctttttttg gaggatcaga gcatccatcg taagttttcc 
     2761 atcgctcaca tccactgctg tgatcgcgtt gatccccccg gttgttccgt cgatccattc 
     2821 ggtattcagc cagttgttga atctgtcgct gaggtatgtt tttaccgcca accctgcttg 
     2881 tgaaaaccat gaatttgcac tgacatatgt tctcgtacgg ttatagtttg gtagtgttaa 
     2941 gcctcctgtt gcagctccgt atggcattct gatgtttggt actgtatatg ccgcggtact 
     3001 gggtgcagct aagattgcag ttcgttcttc gtcgatgttt tttaacggaa acgctgttaa 
     3061 tttgatcttc ttgttgtctg gcattgttat cgaattctct ccggtcgaat ccgcgttgta 
     3121 ggcgatctgg atggatttta ggactctgta cgcgtagatc ttggttgcct ttcttgggtt 
     3181 tcttggctcc cttagtccta atgcatccgg gtctgttcgt tcgaatacga aggagtctcc 
     3241 tagttttgtc agctcgttta ctttctgcgt tgagccggga atattcgtca agaactggat 
     3301 ttcattgacc tcttcgggtg agacgttctc ctcgaactcc agcttaatgt actttggact 
     3361 gtcagttgtc ggactgatac tgtatgctgt acttttgttg tccgtccatg tcttgagcca 
     3421 gttaaccccg gttcctacgc tgatgctctt ccagatatgg tttactccgg tgactacgta 
     3481 tgcgttttct tcctgcttgt tggcgtagta gtttttgaat atatcccagt atgccagatt 
     3541 gaatattgca ggaaatcttc ggacgtattg attgacgctg gaatatccga atccttttat 
     3601 tcccaagtat gagagcagcg agctcggatt gacttgccct ctattggtat cgtttttata 
     3661 gattgatgtg ttggcggtgt tgactaagaa ttgcggcagc agcaccttgc tcatgttcag 
     3721 tcctactccc agggcattat tgtgcagcgc tgctacgtag agcctgatcg gaattacaaa 
     3781 cacatcgatc tggtgcttga agcttccgaa tacaggtccg gttgttggca gcgtcttcac 
     3841 tttcgttgtg atgtcgatgt agaacgttgt gccgtccaaa cctatctgac accaataggg 
     3901 aacgattgtg ccgcatgcct gtgatgttcg gattatcttt cctacgttgt gagacgatct 
     3961 gccgaaatta ggcagatata cttccatttt gctttcgctt cgaattctgt ctcctcctag 
     4021 tgtttttttc atggtttatt cttttttagt gtttttcgaa tcttcgttta tgcgcaggat 
     4081 gaatatgaat gctgcggtca ggatgtcctc ccactctttt ttggcgatgt gttcttcagc 
     4141 ctcctctttg gtgtcgaatt cctttgcatt tacgagcgag ccgcacattg tgatcaccca 
     4201 tttgttgttt ttgttgcgaa tcagtacgaa tatgccgttt ttcgatactt ttctctcttc 
     4261 gatctcgagg tttacatttt tgatttcttc ctcttttttt ccgctttcag caagcagctg 
     4321 acttctgaat ttcttttcca tgttacttaa tttttgttgt tgtttctaca ttgattgtgt 
     4381 cgatttggac accgtttgcc ttaaggctgt acttgtgagt gcacccttgt tctaggatca 
     4441 cggcggctgc cgcgccgatc gcagctgcta ttactgcgat ccactttacg attttcttta 
     4501 ctttttcatt cataggtcta gtgatagttg atattcgaca aatctgattt tgatcattac 
     4561 tattcttcta atgacaggtt cgtacatttc ttttccttcg ttgtatctcc agttgctcac 
     4621 ctcatagaaa ttaacgccgg ttcttattgg attgtgagtg ttcatatatt cattgtcata 
     4681 tgtttctcca tcttctgtta cgtagaacgt tccttcgtat ccgtagtctc gccgggatac 
     4741 tctttctgtt ccgatcaatt ctatgagact ggcagatctg tctccgatgc ctcctctgtc 
     4801 tctgtaggct ctataattct gttcctcttc agtatgcttt ctatttttct ggttgcaaat 
     4861 tccacttccc atatttcacg aattagtttt tccttcttta tgatcagatc tgcatatcct 
     4921 ctgcatatct cctttttttc tctttccgtc atacttttta actgattgcc aatacattac 
     4981 tgcgtttaca tactctttgt actgctccaa tgtttctact ttgataggag tcttgttata 
     5041 atactttacc tgctgctctt cctttatgat ccggaggctc tctcgttctt ggtctgtcca 
     5101 tagcttctgt ttgtagtatg tcggcagcgc tagttttatt cctgaggctg ccctgtatgt 
     5161 ttcctctgtg aatttgtctt ggtatctgtg cttgttgagc gagttcttgt ttatatagcc 
     5221 tattccaatc ccttttgaag taaatatctt cccgttgaac tcaggattag cttcgtctct 
     5281 ctttgtcacg tactttacga tgtagtttat tgttttctcg cttacttca 
//
