FEATURES             Location/Qualifiers
     gene            complement(766..1653)
                     /locus_tag="Alpa_01"
     CDS             complement(766..1653)
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MASWAGALQGIAGQNTSSSAKQAEELRTWQEQQAELARKYNSQEAQKNRDWQERMSSTAHQREVRDLIAAGLNPVLSVTGGSGAAVTSGATASSSAPSGAMGSVDNSATGAVAGLFGSLLSSFLSLEGTRVSAQSNQAIADKYTAMSKYTSELQAQTQLTSTNIQAMAQKYTADAHLAGTKYAADQSAAAQKVSASIHAAAQKYGYNVQSMTQRDIAAFNAQVNKDLQKAGFKQEFDIKKAFPNNAWNVFGGLGTQAVEDIQNANLPWGKNIFDFFANVLPGAISGKDASKRKKR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:INSD:CDL65860.1"
                     /inference="similar to AA sequence:INSD:CDL66940.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2745..3476
                     /locus_tag="Alpa_03"
     CDS             2745..3476
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MVNAIGQSHNGEITTLSNRNSHVRALLGSRQRRSEVVVELGGLEGHTAFDNIGDIVGAVRTCKGSIIHGDVEGVGEVFITEPLIHDEGVGTEGESVNGEVGNTSRDAHVVGNGANRPATRGRSHLGHGILHGRNPGGLSVLTHELTPMLPYDTVGHEVKIGVQVEIIHHRGEQSLQAGNHGCLHLESITGKNFIHIEGDNVSDIETEFNTMVTPKSATSNIKVSRIKRKSCIFITRQVNTSSQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1767..2771)
                     /locus_tag="Alpa_02"
     CDS             complement(1767..2771)
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="VTLADRVDHSQFKAPMSAWISGPQPNKDYSSVIQTWNFGSNLGGTDVESVATGVGFDAPTSRDGSMYLDNLWAIQSGNVTAATINQLRMAFQIQKLYEKDARGGTRYIEILKSHFGVTSPDARLQRPEYLGGNRIPVNINQVVQSSATQSSGTPLGDTAAFSVTTDVHGDFIKSFVEHGFVIGIMVARYDHTYQQGLERFWSRRDRLDYYFPVFANIGEQPILNKEIYAQGTVQDNEVFGYQEAWADYRYKPSRVAGEMRSKAPTSLDVWHLADEYTQLPKLSDAWIREDKTNVDRVLAVTSAVSNQMFADLYIQCKATRPMPMYSIPGLIDHH"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65928.1"
                     /inference="similar to AA sequence:INSD:CDL65904.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3598..4350)
                     /locus_tag="Alpa_04"
     CDS             complement(3598..4350)
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="VTCVLVFSASPPNRMTISPPAISPTLSWNPMVCFLLTLPIFSFSASVSSIPIRVFSFRRSFMSSFPTARRFSALCRRRMPMFETWHREQQHFCSEPGCGEKILYSPEFDRFGVMTLKESGKEDLYAFIQSHKDSVDLHKIMDRFNAGDASALQKVQGMFGDFSEMPQTYAGLLNHMIEAEQTFMSLPLETREKFGQSFHAWLAQAGSVSWLEAMGMVTPPTSQNSAGEPPAAPQSPEGGETDPAPASPAG"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="similar to AA sequence:MV_prot:putative.VP3"
                     /inference="similar to AA sequence:INSD:CDL66946.1"
                     /inference="similar to AA sequence:INSD:CDL65858.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4365..4562)
                     /locus_tag="Alpa_05"
     CDS             complement(4365..4562)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MDFSQTMEIIDQVYQDMFVETVLKFEVLEKSVDVGSAGRMAHQERLDGMRKLYTKLIKELYQYDA"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 ccaaccaaga catagccgat aggcttccgg gtgcaagggg tgtcatactc ccctttctgt 
       61 tctaccacag accaggcttt ttgtaaagcc tccgagtaaa aatactgata tccgacatca 
      121 ccacgtcgga tatcttgcac gggcatcaag tcatgcaagt ggagtccaaa aactattgca 
      181 tgataatggg gccggaaggt ggtagagcca tactcaccac aagcgaaata gcgaatgtgg 
      241 tcatcgggga aagctttgcg aagacgcttc cagaacaact gtaaatctct tttacacaat 
      301 gaaagggact gcatcgcctc tccggtctcc ggatcagcat accaatggcg ggggacatgc 
      361 tcctcatcat aagtcagagt caggaaataa gccgagtcgt gatactcaag ttccatcata 
      421 caacggttgg cccattcacg agagcgggca atccggcaac cttcacactt gccgcagggg 
      481 atttcaaccc aatcgagcca agccttttcc gaataagcag aaatctcggg aacatcggaa 
      541 gtacaaattc gacctttgcg caactccaag tgatgaacac catagggaac tattttcata 
      601 tctgctttgc cgttcttcgt ggtgccgatt ctaaatccct tcaagggatg aaaacaggct 
      661 ataaaatcac cctctccgta ctcggttggt ctggtggtgt cagtgggaac cagtatatca 
      721 agatagtact ggttcccacg accctccaat tttcagcctc agtcgtcagc gctttttgcg 
      781 ctttgaagca tccttgccag aaatagcacc gggcagcacg ttggcaaaaa aatcaaagat 
      841 gttcttaccc cagggtaaat tagcattttg aatatcctca acagcctgag tgccaagacc 
      901 accaaaaaca ttccaagcgt tattcgggaa agcttttttg atatcaaact cctgtttgaa 
      961 gccagctttc tgtaaatctt tattcacttg agcattgaaa gcagcaatat ccctttgcgt 
     1021 catagactgc acgttataac catacttttg cgcagcagca tggatagaag cagaaacctt 
     1081 ctgagcggcg gcggactggt ctgcggcgta ctttgtacca gccaaatgag catccgcagt 
     1141 atacttctga gccatagctt gaatattggt agaagtaagc tgagtttgtg cctggagttc 
     1201 ggaagtatat ttggacatag ccgtatattt atccgcgata gcctgattag actgagcaga 
     1261 aacacgggta ccctcaagac ttaaaaaaga actaagcaag ctcccaaaca agccagcaac 
     1321 agcaccagtg gcactattat ccacactgcc catagcaccg gacggggcag aggagctagc 
     1381 cgttgcgcca gaagtaacag cggcaccgct accaccagtg acagaaagaa ccggattaag 
     1441 gccagcagca attaaatcac gcacctctcg ttgatgggca gtagagctca tacgctcctg 
     1501 ccaatctcta tttttttggg cctcttgaga attgtatttt cttgcaagct cagcctgctg 
     1561 ctcctgccaa gttctcagct cctccgcctg cttagcggag gagcttgtat tctgaccggc 
     1621 aatgccctgg agggcacctg cccagctagc catcttctgg ccactggaca tagtagggta 
     1681 tcgaggatta ccaacaacct ggaggacagg attggtgaca ggctggatgg aacggcccga 
     1741 attaatagcc attatatcac ctccgattag tgatggtcaa taaggccagg gatactatac 
     1801 ataggcatag gccgagtagc cttacactgg atgtacaagt cggcaaacat ttggttagac 
     1861 acagcagaag taacagcaag tacgcggtca acattggtct tatcctcacg aatccacgca 
     1921 tcagacaact tggggagctg ggtatactcg tcggcaagat gccaaacatc aagggaggtc 
     1981 ggagccttgg aacgcatttc accagcaacg cgggaaggct tgtaacggta gtcagcccag 
     2041 gcttcctgat aaccaaaaac ctcattgtcc tggacggtac cctgggcgta aatctccttg 
     2101 ttcaagatag gctgctcgcc aatgttggca aagacgggaa aatagtaatc caggcggtca 
     2161 cgacgagacc aaaaacgctc aaggccctgc tgataggtat ggtcatagcg ggcaaccatg 
     2221 ataccgatca caaagccgtg ctcaacgaaa gacttgataa agtcaccatg aacgtcagta 
     2281 gtaacagaaa aagcggcagt atcgccgaga ggagtgccag aagattgagt agccgaggat 
     2341 tggacaacct ggttgatatt aacaggaata cggttgccac caagatactc aggacgctgg 
     2401 agacgagcat cgggagaagt aacgccaaaa tgagacttga gaatttcaat gtaacgagtg 
     2461 ccacctcttg catccttctc gtaaagcttc tgaatctgga aagccatgcg gagctggtta 
     2521 atagtagcag cggttacgtt accagactgg attgcccaaa ggttatccaa atacatagag 
     2581 ccatcacgag aggtcggagc atcaaaacca acacccgtag ccacagattc aacatcagtg 
     2641 ccgccaagat tactaccaaa attccaggtc tggataacgg aagaataatc cttattaggc 
     2701 tgcggaccag aaatccaagc agacatagga gccttaaatt gagaatggtc aacgcgatcg 
     2761 gccagagtca caacggggag attaccacct tgagcaacag gaatagtcac gtcagggccc 
     2821 ttctggggag caggcagcgc agaagtgaag tagtcgtgga acttggcggc cttgaagggc 
     2881 ataccgcctt tgacaacatc ggtgatatag ttggagccgt tagaacctgc aagggtagca 
     2941 tcatccacgg ggatgttgag ggggtcggag aggttttcat cacggaacca ctcattcatg 
     3001 atgagggcgt aggcacggaa ggggagagcg ttaacggaga ggttggcaac accagtaggg 
     3061 atgcccatgt agtcggcaat ggagccaata gaccagccac cagagggcgc agtcacctgg 
     3121 ggcacggaat actccacgga aggaatccag gcggactgag tgttctcacc catgagctca 
     3181 cgccaatgct gccatacgat acggttgggc acgaagtaaa aataggtgtc caagtagaga 
     3241 ttatccatca taggggtgag cagagtttgc aggcgggcaa ccatggatgt cttcacttgg 
     3301 aaagtatcac cgggaagaac ttcatccaca tagaagggga taacgtctcc gacattgaaa 
     3361 ctgagtttaa cactatggtc acgccgaaaa gtgctacgag caatatcaag gttagtagga 
     3421 ttaagagaaa atcttgtatt ttcattacga gacaagttaa tacctccagt cagtaacggt 
     3481 tgttcaaaag gaggggccca tggggcccct cgctctctgt tgttcacacg gccagggcgg 
     3541 ccgtgtatgc cttgaccaga acctcaacgg ctcaagccaa tgtcaggaat atgaaattta 
     3601 accagcgggt gaggctggcg cggggtctgt ctcacctcct tcagggctct gtggggccgc 
     3661 tggcggctca ccagcggaat tttgggaggt gggtggtgta accataccca tagcctccaa 
     3721 ccagctcaca gagcctgcct gagcgagcca agcgtggaat gactgaccga acttctcacg 
     3781 ggtttcgagg ggtaagctca taaacgtctg ctcggcctct atcatgtgat tgagcagccc 
     3841 ggcataggtc tggggcattt cggagaaatc accaaacatg ccttgcacct tctgcaaggc 
     3901 gctcgcatca ccagcgttaa acctgtccat gattttgtga aggtcgacgg aatccttgtg 
     3961 ggactgaatg aaggcgtaga ggtcttcttt accactctcc ttgagggtca taacaccgaa 
     4021 gcggtcaaac tccggagaat aaagaatctt ctcgccgcaa ccgggctcag agcaaaaatg 
     4081 ctgctgttca cgatgccaag tctcaaacat tggcatcctc cttctgcata gagcggagaa 
     4141 cctccgcgcc gtcggaaacg agctcatgaa gctgcgccgg aatgagaaca cccttatcgg 
     4201 aatcgaactc accgatgcgg aaaagctgaa aatcggaagc gtgagtaaaa agcacaccat 
     4261 gggattccat gatagcgttg gcgaaattgc gggcggcgat atagtcattc tgttcggtgg 
     4321 tgaggccgaa aaaaccagaa cgcaggtcac ggatagcgta aacgttaagc atcatattga 
     4381 tacaactcct taatcagttt agtgtaaagc ttgcgcatgc cgtcgaggcg ctcctgatgg 
     4441 gccatacggc cagcggagcc gacatcaaca cttttctcaa gaacctcgaa cttgagcaca 
     4501 gtctcgacga acatatcctg atacacttgg tcaataattt ccatcgtttg agaaaaatcc 
     4561 attactctga ctccaaaaaa ccagatagct caatgagccg gatttgcagt tccagggcga 
     4621 ggaactcata aaaatcaagc tccatatcga gagaacgcca aactttggcg gccagctcgt 
     4681 aacagtcggc atcgagattc agccggacac agacggtagc acgttcgtca ttcacatcct 
     4741 gatacctcca cggtagattt tggggttcac gttgatacgc ttactgttca cggcggtatg 
     4801 gcgaaatacc tgcctgtcct gggaacgcct catccttcga gccatgatta caactccctt 
     4861 ctcaaatttt ttatacggtt atggagcacg cgctcctggg tctcaaggat ttcttcgtag 
     4921 gtcatggtgg actgggccag cttggccttc ttgccctctt cagcaaagtg cttgcgcttc 
     4981 tccttgatgg cagccataag ctccggttgt tccaagtcaa aaagcttatc gaaatacttg 
     5041 gggggacg 
//
