FEATURES             Location/Qualifiers
     gene            83..1180
                     /locus_tag="Alpa_01"
     CDS             83..1180
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="VLNQFLSSDGYDIAIVPALIGAIGAIGAAGFGAAANNKNVAQNQMNNDFNAREAQKARDFQLEMWNRQNEYNSPANQRKLRAEAGYNPYLGYDSNTGVAGSTGSTSQAQAASPLSLNPEVYSELGSQLGRAGQMIYQERESNARTKALQGDADVARAQALQVFSNVDWGKLSPDYKKWMRETGLQRAQLDYDTNKQNLQNLRWSNLIQMAERTNLLLSANTKRTLNKYLDQSEQTRINVMAAQYYDLMAAGHLKYQQCKESIAKQILYSKQGSWYDSMANKNNLDYRNALALADDYIAAMSTQYESQTAYNMGFGQKAQEAGRRDAESKSFKSLIDRWNYNKRYYEEGLNTLQVVANAIGSIRGR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1314..1529
                     /locus_tag="Alpa_02"
     CDS             1314..1529
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MKENFYFVLYLGTSVLNVYAGSQSNARAYFRRWIEKNLPVYYHESDFWFLRYECFSDFLASRYPVKFDLKL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 20 and 21 "
                     /inference="protein motif:TMHMM:2.0"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2169..2375
                     /locus_tag="Alpa_03"
     CDS             2169..2375
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MRITPQQWIEIVKLISTFIIGVITTLFVQSCTISMSVSKNNQNSTQKTEQTSTSSIDSTKININPKNF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02719"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2379..2528
                     /locus_tag="Alpa_04"
     CDS             2379..2528
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MEMYLISYQKQGSAPVVYVASDNNLMATVNQALKESEGAPVLVSSAKTI"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2531..4201
                     /locus_tag="Alpa_05"
     CDS             2531..4201
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MTEKEREKYLATECFHPRKVTNRYTHETLFVRCGTCPSCLVHRSNIQCALISNMSSHFKHAYFFTLTYSDEFVPRVSLEVVERCDAESEIDAYMSDSDPRHLPYDDSRYQIAATYLPRSGCFRVHDSGRVRDFSETEDSYQFLHTFSGKEIRDLLVSSNGRYDFSRKCVVFPSIDECRNEILVLNPYDQNLFFKRLRKLISERYDEKICYYLVSEYGGRTYRPHWHGILFFNSDALTSSICELVSKSWSYGRTDCSLSRGSAAGYVASYINSFVDLPDFFNRHKEIKPKSYHSKGLSVNSLFSRTSDISQVDEVAASCFDGFSVPINGEYVTVKPSRSYEHTVFPRISDPFFKDPHSCVDLFFGAFTASNRLIRDGYISIDENLSVWQLSRRYAEYYFSVRAGHYNVSYYDSLIFKFTRLETDQIDFDCITGKIYRFFSAVSRTLRFWHLDCYVLPEDLKKSLLKLFISSVDYWSKKELKFINDFYDYLSAHPESDSFLKSRTVGFVCPPKENISFWNDLNTTLSSLKNSVTQRIFQKVKHKNYNDISGLLFNLNF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_021963494.1"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4204..6096
                     /locus_tag="Alpa_06"
     CDS             4204..6096
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MAHFTGLKQLQNHPHRSGFDIGAKNVFSAKCGELLPVYWDLGIPGCTYDIDIQYFTRTRPVQTAAYTRIREYFDFYAVPIDLIWKSFDASVIQMGETAPVQAKDILTALTVSGDLPYCSLSDLGLSCFFASGSMSVPSLKSWQANNAYANIFGYIRGDVNYKLIHMLNYGNIIPNNMPALNIGNSNYRWWNREAPLASDSLIVYSQMYNFNMNVNLFPLATYQKIYQDFFRWSQWEKADPTSYNFDWYQGSGNLFGGTIDTSLPASSDYWKRDNLFSLRYCNWNKDLFMGVLPNSQFGDIAVIDIEGGLNIPASRISLSSNNRPTIGIKVGAQVSSPNNCSITNSSGNLSTGDILSVGIPAASYKLQSSFNVLALRQAESLQKYREITQSVDTNYRDQIKAHFGVNVPASDSHMAQYIGGIARNLDISEVVNNNLQGDGEAVIYGKGVGTGTGSMRYTTGSKYCILMCIYHCMPVLDYDISGQHPQLLATSVDELPIPEFDNIGMEGVPLVQLVNSNLYKTNKSVKIDSILGYNPRYYAWKSNIDRIHGAFTTTLQDWVSPVDDSFLYSTFGTPSSGSFVTWPFFKVNPNTLDNIFAVKSDSTWESDQFLVNSYVGCKVVRPLSRDGVPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65742.1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /db_xref="InterPro:IPR003514"
                     /db_xref="InterPro:IPR016184"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            6103..6603
                     /locus_tag="Alpa_07"
     CDS             6103..6603
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MIMKEKKELCFGCGFREFTPTREISTFPSTRIGEISLEVDPVEQFRFETETFGESVSYRLRSDVSMLLHAADLAKRAGVSTVQRFLDSKSPRSSSLQEQLDKLNPSDDELLSMVKSRHLQHPSEILAWIDSINELAEDMRSEALKQTAENGSICPIVLVKKKNGDS"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 gaggatatga gatccgaagc tcttaaacag actgccgaaa atgaaagcac taaatttgat 
       61 tcttctggtt ctgatgtcag tggtgctgaa tcagttcctg tccagtgatg gctatgatat 
      121 agctattgtt cctgctctta ttggtgctat tggtgctatt ggtgctgccg gatttggtgc 
      181 tgctgctaat aataagaacg ttgcacaaaa tcagatgaat aatgatttta atgctcgtga 
      241 agcccagaaa gctcgtgatt ttcagcttga gatgtggaat agacagaatg agtataattc 
      301 tcctgctaat cagcgtaaat tgcgcgctga agctggatat aatccttatc tgggttatga 
      361 ttcgaatacc ggagttgctg gttctaccgg tagtacttct caagctcaag ccgcttctcc 
      421 tctctccttg aatcctgaag tttattccga gcttggttct caacttggtc gagccggcca 
      481 aatgatttac caggaacgag aatctaatgc tcgtactaag gctttacaag gagatgcaga 
      541 tgtagcacgt gctcaagctc ttcaggtatt ttctaatgtt gactggggaa aactttcccc 
      601 agattataaa aaatggatgc gagagactgg tttacagcgt gctcaacttg attatgatac 
      661 caataagcag aatcttcaaa atttgcgttg gtctaatttg attcagatgg ccgagcgtac 
      721 gaatttgttg ctatctgcta atactaagcg tactttgaac aagtatcttg atcagtctga 
      781 acagactcgt attaatgtga tggctgccca atattatgat ctgatggccg caggacattt 
      841 gaaataccag caatgtaagg aatccattgc taaacagatt ctatactcta agcaaggttc 
      901 ttggtatgac tctatggcta ataagaataa tcttgattat cgtaatgctc ttgcccttgc 
      961 tgatgattat attgctgcta tgagtactca atatgaatcg caaacggctt ataatatggg 
     1021 cttcggccaa aaagcccagg aagccggaag gcgtgacgct gaatctaagt cctttaaatc 
     1081 tcttattgac cgctggaatt ataataaacg ttattatgaa gaaggtttaa atactcttca 
     1141 agttgttgcc aatgctattg gatctattcg tggtcgttag tcggtagtat ctttatcctc 
     1201 ccgcgtagcg ggaggatttt ttttttgctt ttttttaaca tcttttaatc attataattt 
     1261 gttataataa ctatttatta ttatctttat atatcattta aaagttaata gtcatgaagg 
     1321 aaaattttta ttttgtgctg tatttaggaa cctctgttct taacgtttat gctggctctc 
     1381 aatctaatgc ccgtgcttat tttcgtcgtt ggatcgagaa gaacttaccg gtctattacc 
     1441 atgagtctga cttctggttt cttcgttatg agtgcttctc tgatttctta gcctcccgat 
     1501 atccggtgaa gtttgatctt aaattgtagc ttcacggcct gcgtggcctg aacgcaaatt 
     1561 gggtaacagg ggctttttta agccccctta acgactagta ccttattatc ggcgaagccg 
     1621 cactccacgc gcgaagcgtg ggagatccgt caatcttcta atctatttgt taaggtagcc 
     1681 gcccgtctgt cttaaccata cctcaccttc cccatataca ccaaggccgc ccggcccgag 
     1741 gtgctaaaca tagatccatt caatgttaac acctaccagc tgcaggacgt gccgttgcgc 
     1801 agcttccccc acgaggaaca cagccccatg cgagcgtagc tatgcatgga agatgtgttc 
     1861 ctcgttcttg ttaaagtgtt gtgctatatt tattatttgt ttattttttt tactatttta 
     1921 tattattata gcacatacct gcgcccgaag ggcggaacgg ttcggtatcg ctgcccccta 
     1981 gttcatttta ttggcgaagc ctatttaatt ttttcccgaa gggctttgaa tttaccttat 
     2041 tcaaagctct tatcccttgt ctttcttttg aaaaattaca ctgcctctaa agaaaatact 
     2101 attttatttg gttattatga tttttatttc tatcattgtg gtgttgttta actcaaacct 
     2161 gttttgttat gagaattact cctcaacaat ggattgaaat tgtaaaatta atttcaacgt 
     2221 ttattattgg tgttattacc actttgtttg tgcagtcctg taccatttct atgtctgttt 
     2281 caaagaataa tcaaaactcg acgcagaaaa ccgaacagac ttctacgtcg tctattgatt 
     2341 ctactaaaat taatattaac cctaaaaatt tttaaattat ggaaatgtat ttgatttctt 
     2401 atcagaagca aggctctgcc cctgttgttt atgttgctag tgacaataat cttatggcta 
     2461 cggttaacca ggctctgaaa gagtctgaag gtgcgcctgt attggtttca tctgctaaaa 
     2521 ctatttgact atgactgaaa aagaacggga aaaatattta gctacagagt gttttcatcc 
     2581 tcgaaaggtg actaatagat acactcatga aacactgttt gttcgttgtg gtacgtgtcc 
     2641 gtcatgcctt gttcatcgtt ctaatatcca atgtgcttta atatcaaaca tgtcgtctca 
     2701 ttttaagcat gcctactttt ttacgcttac ttattcggat gagttcgtcc ctcgtgtatc 
     2761 tcttgaggtt gtagaaaggt gtgatgctga aagtgagatt gacgcttata tgtccgattc 
     2821 tgaccctaga catttaccct atgatgattc tagatatcaa atagcagcta cttatttacc 
     2881 ccgttctggc tgttttcgcg ttcacgactc cggtcgtgtt cgcgattttt cagaaacaga 
     2941 ggattcatat cagtttcttc atactttttc cggcaaggaa atacgtgatt tgttggtatc 
     3001 ttctaacggt cgttatgatt tttcacgcaa atgtgttgtt tttccttcta ttgatgaatg 
     3061 tcgtaatgaa attttggttt tgaatcctta tgatcagaat ttatttttta aacgtttacg 
     3121 taaattaata tcagagagat acgatgaaaa aatatgttac taccttgtat cagagtatgg 
     3181 tggacggaca tatcgtccgc attggcatgg tatattattc tttaactcgg acgcactcac 
     3241 ctcgtctata tgtgagttgg tatctaagag ttggagttac ggtcgtacag attgttcact 
     3301 ctcgagaggt tccgcagctg gttatgttgc gtcatatatt aatagttttg tcgatttacc 
     3361 agattttttt aaccgacaca aagaaattaa gcctaaatcc taccactcca aagggttatc 
     3421 ggttaatagc ctcttttctc gaacgtccga catttcacaa gtggacgaag ttgccgcttc 
     3481 gtgttttgat ggattcagtg ttccgattaa tggtgaatat gtcactgtca aaccttcacg 
     3541 gtcgtatgaa catacagtat tccccagaat ctctgaccct ttttttaagg atccacacag 
     3601 ctgtgttgac ttatttttcg gtgcgttcac agcgtccaac aggctcatac gtgacggata 
     3661 tatatcaata gatgagaacc tctctgtttg gcagctatct aggcgttatg cagagtatta 
     3721 tttcagtgtt cgagctggtc attataatgt ttcttattat gattctttaa ttttcaagtt 
     3781 tacccgtttg gaaactgacc aaattgattt tgattgcatt actggtaaaa tttatcggtt 
     3841 tttttctgcc gttagtcgta ctcttcgttt ttggcatctc gactgctatg ttttacctga 
     3901 agatttaaag aagtctttac tcaagttgtt tatttcttct gttgattatt ggtctaaaaa 
     3961 ggaattgaaa tttatcaatg atttttatga ttatctttct gctcatcctg aatcagattc 
     4021 ttttttgaaa tccaggactg ttggttttgt ttgtcctcca aaagagaata tttcattttg 
     4081 gaatgattta aatactacct tgtcctcttt gaaaaattct gttactcaac gtatttttca 
     4141 gaaagttaaa cataagaatt ataatgatat atcaggttta ttgtttaatt taaattttta 
     4201 attatggctc attttacagg tttaaaacag ctccagaatc atcctcatcg ttccggtttc 
     4261 gatattggag ctaagaatgt gttttctgcg aagtgtggtg aacttcttcc tgtttattgg 
     4321 gatttaggta ttcctggttg tacgtacgat attgatattc agtattttac tcgtactcgt 
     4381 ccggttcaaa ctgccgctta tactcgtatt cgtgagtatt tcgattttta cgctgttcct 
     4441 attgatttga tctggaagtc atttgacgct tctgttattc aaatgggtga gacagctcct 
     4501 gttcaagcta aggatatttt gactgcgttg actgtttccg gagatttgcc ttattgttct 
     4561 ctatcagatt taggtctatc ttgttttttc gcttctggtt ctatgtctgt ccctagcttg 
     4621 aaatcttggc aggcgaataa tgcttatgct aatatttttg gttatattcg tggagatgta 
     4681 aattataagc ttattcatat gttaaattat gggaatatta ttcctaataa tatgcctgct 
     4741 ctaaacatcg gtaattctaa ttatcgttgg tggaatcgag aagctcctct tgcttccgat 
     4801 tctcttattg tttatagcca gatgtataat tttaacatga atgtcaatct tttccctctt 
     4861 gctacttatc agaagattta ccaagatttc ttccgttggt ctcaatggga aaaggctgat 
     4921 cctacttctt ataattttga ctggtaccag ggttctggaa atttatttgg tggtactatt 
     4981 gatacttctc ttcctgctag ttccgattat tggaaacgag ataatttatt ttctcttcgt 
     5041 tattgcaact ggaataagga tttatttatg ggagttcttc ctaattccca gtttggagat 
     5101 attgcagtaa ttgatattga aggaggtctt aatattcccg cttctcgtat ttctttatcc 
     5161 tctaacaacc gtcctactat tggtatcaag gtaggcgcgc aagtttcttc tcctaataat 
     5221 tgttcaatta ctaattcttc aggtaatttg tcaactggtg atattttgtc tgttggcatt 
     5281 cctgcagctt cttataagct gcaatcttcg tttaacgttc ttgctcttcg tcaggcagaa 
     5341 tctttgcaga agtatcgtga aattactcaa tctgttgata ccaattatcg tgaccagatt 
     5401 aaagctcatt ttggcgttaa tgttcctgct tctgattctc acatggcgca gtatattggt 
     5461 ggtattgctc gaaatcttga tatttccgag gttgtaaata acaacttgca aggtgatggt 
     5521 gaagctgtca tctacggtaa aggtgtgggt actggaaccg gttctatgcg ttatactaca 
     5581 ggttccaaat attgtatttt gatgtgtatt taccattgca tgcctgttct tgattatgat 
     5641 atttccggcc agcatcctca acttttggct acttctgtag atgagcttcc tattcctgaa 
     5701 ttcgataata ttggtatgga aggtgtacct cttgttcagt tggttaattc caatttgtat 
     5761 aagactaata agtctgtaaa gattgattct attctaggtt ataatcctcg ttattatgct 
     5821 tggaagtcta atatagaccg tattcatggt gcatttacta cgactcttca ggattgggtt 
     5881 tctcctgttg atgactcttt cctgtatagt acgtttggta ctccttcttc tggttctttt 
     5941 gtcacctggc ctttcttcaa ggttaatcct aatactttgg acaacatttt tgccgttaag 
     6001 tctgattcta cttgggagag tgatcaattt ttggttaatt cttatgttgg atgtaaggtt 
     6061 gttcgtccat tgtcgcgtga tggtgttcct tattaaattt atatgattat gaaagagaaa 
     6121 aaagaacttt gttttggatg tgggtttcgt gaatttaccc ctactcgtga gatttctact 
     6181 ttcccctcta ctcgtattgg tgagatttct cttgaagttg accctgttga acaatttcgt 
     6241 tttgagacag agacttttgg cgaatctgtt tcttatcgtc ttcgctctga tgtgagcatg 
     6301 ttacttcatg ctgccgacct tgctaagcgt gccggtgttt ctaccgttca acgatttttg 
     6361 gattctaaga gtccccgttc ttcttcttta caagaacaat tggacaaatt gaacccttct 
     6421 gatgatgagt tgttgtcgat ggttaaatct cgtcatttgc aacaccctag tgagattctt 
     6481 gcttggattg attctattaa tgaacttgcc gaggatatga gatccgaagc tcttaaacag 
     6541 actgccgaaa atggttcaat ttgtccaatt gttcttgtaa agaagaagaa cggggactct 
     6601 tagaatccaa aaatcgttga acggtagaaa caccggcacg cttagcaagg tcggcagcat 
     6661 gaagtaacat g 
//
