FEATURES             Location/Qualifiers
     gene            complement(51..1655)
                     /locus_tag="Alpa_01"
     CDS             complement(51..1655)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MSLFNLSSVKNHPRRSGFDLSSKVAFTAKVGELLPVKWTLTMPGDKFSLKEQHFTRTQPVNTSAYTRVREYYDWFWCPLHLLWRNAPEVISQIQQNVQHASSFDGSVLLGSNMPCLSADQISQSLDQLKSKQNYFGFDRADLAYKLLQYLRYGNVRTGVGSNGARNYGTSIDVKDGTYNQNRAYNHALSIFPILAYKKFCQDYFRLTQWQDSAPYLWNIDYYDGKGAVTILPTSLTSSAAYFEGDTFFDLEYCNWNKDMFFGILPDAQFGDTSVVDISYGVTGAPVVTKQNLQSPTNSSVSIGTDDANSKTLIASGTNLTLDVLALRRGEALQRFREISLCTPLNYRSQIKAHFGVDVGAAMSGMSTYIGGEASSLDISEVVNTNITETNEALIAGKGVGTGQSSESFYAKDWGILMCIYHSVPLLDYVLSAPDPQLFTSENTSFPVPELDSIGLEPISVAYYSNNPTELPSASGLLSDPTVTVGYLPRYFAWKTSLDYVLGAFTTTEKEWVAPITQTLWTKYVEAFERFGYWY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_021963493.1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1659..1856)
                     /locus_tag="Alpa_02"
     CDS             complement(1659..1856)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MKISANQWIEIVKLISTFVIGIITTLFVQSCTLSLSVSKNNSNSTQQTEQSSVSSIDSTSIDLKR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2257..2706)
                     /locus_tag="Alpa_04"
     CDS             complement(2257..2706)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="VSIRNLRGTTLIAMLRTISIVLYLFPLFIKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLMECLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYDSLPETSPLKSQLRVMYPNLFVGGANTTSVKDAG"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1853..2194)
                     /locus_tag="Alpa_03"
     CDS             complement(1853..2194)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="LDWSVPVGKISRFFYRFNRFDKMKGSLRSKLKAVALFYDYRDYESLKNQLSLQELVFSELGYSDELFDSFYIKPCIKKLKNSYTDKWKDTNYREVHYFRVKHKVLNDENNIFL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2673..3545)
                     /locus_tag="Alpa_05"
     CDS             complement(2673..3545)
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MDSKVFKYFNKCENPRIIQNKYTGDFVKVDCGECPYCLIKKSDRATQKCDFVKFNHKYCYFVTLTYNSEYVPKMSLTQIDDYLTEWLPVRPPKSIGTQLVARMVMDSRVNKKIPNFVSAKVNRPYMLEHLHFIEAERYKALSLRYPNFGSKFRPYILRSILRKSPLQRFKDEYFEELVWMLPELAESLKKKNNTDANGAFPQFKGLLKYINIRDYQLFSKRLRKYLSKKIGKYEKIHSYVVSEYSPKTLRPHFHILFFFRLGRNRPKHSTGCISELETWSCRYATCEGQR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_021963494.1"
                     /inference="similar to AA sequence:INSD:CDL65709.1"
                     /db_xref="eggNOG:bacteNOG07343"
                     /db_xref="eggNOG:bactNOG166725"
                     /db_xref="eggNOG:bctoNOG24068"
                     /db_xref="eggNOG:NOG117857"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3925..4107)
                     /locus_tag="Alpa_06"
     CDS             complement(3925..4107)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MNVQSKDGAKASVPQLVDTDKVVVCDLVERELTRQDCVVIFQKVEECDKTGIEFNLFDRS"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4444..4749)
                     /locus_tag="Alpa_07"
     CDS             complement(4444..4749)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MYRGKNVKQDAASDFMGNQWQNQLTGELLNSKRWDNEMQAWREAINSANALLRGSSDAMNTFNTYENGRYERNRPYTSDYEEYEQFDKARGTRRKTRKYKR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 ccataaaaat agggtcaaga atagacggat taaccttaaa gaaattatag ttaataccag 
       61 tacccgaagc gttcaaaggc ttcaacatat tttgtccaaa gcgtttgagt aataggagcc 
      121 acccattcct tttcggtagt ggtaaaagca cctagtacat aatccaacga agttttccaa 
      181 gcaaaataac gcggaagata tccgaccgta acagtaggat cagaaagaag accagaagcg 
      241 gacggaagct cagtcggatt attagaataa taagctactg aaataggctc caatccaata 
      301 gaatccaatt cgggaacagg aaaagacgta ttttcgctag taaacaattg cgggtcagga 
      361 gcactcaaaa catagtcaag aagaggaaca gaatgataaa tacacatcaa aataccccag 
      421 tctttagcgt aaaaactttc actagattga ccagttccaa cacctttacc agctatcaaa 
      481 gcttcattag tttctgtaat attagtatta acaacctcgg agatatccag agaagaagcc 
      541 tcaccaccta tataagtaga cataccagac atagcagcac caacatcaac accaaaatgc 
      601 gctttaatct gtgaacgata gttcaaagga gtacaaagag aaatttcgcg aaaacgttga 
      661 agtgcctcac ctctacgaag tgcaagcaca tcaagagtca aattcgtgcc agacgcaatc 
      721 aaggtttttg agttagcatc atcggtacca atagaaacag aagaattcgt aggcgactgc 
      781 aaattctgct tagtaacaac aggcgcacca gttacaccat aggaaatatc aacaaccgaa 
      841 gtatcaccga attgagcatc aggcaaaata ccaaaaaaca tatccttatt ccagttgcaa 
      901 tactccaaat caaaaaaagt gtcaccctca aaataagcag cagaggacgt aagacttgta 
      961 ggcaagatag taacagcacc ttttccgtca taataatcaa tattccaaag ataaggggca 
     1021 gagtcctgcc actgtgtcaa acggaaataa tcctggcaaa atttcttata agcaagaata 
     1081 ggaaaaatgc ttaaagcatg attataagcc ctattctgat tataagtacc atccttaacg 
     1141 tctatagaag ttccataatt acgggcacca ttagaaccta caccagtacg tacgttacca 
     1201 taacgaagat actgaagaag cttataagcc aaatcagcac ggtcaaaacc aaaataattc 
     1261 tgtttacttt tcaattggtc caaagactgt gaaatctggt cagcagacaa acaaggcata 
     1321 ttcgaaccaa gcaaaacact gccatcaaac gaagaagcat gctgcacatt ctgctgaatc 
     1381 tgagaaataa cttctggagc attacgccaa agaagatgta aaggacacca aaaccagtca 
     1441 taatactcac ggacacgagt ataagccgag gtattaacgg gctgggtacg cgtaaaatgc 
     1501 tgctccttta aagaaaactt atcaccaggc attgtcagcg tccacttaac aggaagcaat 
     1561 tcgccaactt tagcagtaaa ggcaacctta gacgaaaggt caaaacccga acgtctagga 
     1621 tgattcttta cactcgacaa attaaataaa ctcataattt aacgttttaa atcaatacta 
     1681 gtagaatcaa tacttgaaac cgaagattgt tcggtttgtt gagtagaatt agaattattc 
     1741 ttcgaaacag acaaagaaag cgtacaagat tgtacgaaca aagtcgtaat aataccaatt 
     1801 acaaacgtag aaatcaattt aacgatttct atccactgat tagctgaaat tttcataaga 
     1861 atatattatt ttcatcgttc aacaccttat gcttaacacg aaaatagtga acttctctat 
     1921 aatttgtatc tttccactta tccgtataac tatttttcag tttttttata caaggtttaa 
     1981 tataaaaaga atcaaaaagt tcatcagaat aaccaagttc gctaaaaaca agttcctgca 
     2041 aagaaagctg gttctttaaa gattcataat cacgataatc ataaaaaaga gcaaccgcct 
     2101 ttagcttgga acgcaaagaa cctttcattt tatcaaacct attaaaacga tagaaaaaac 
     2161 gggaaatctt accaacagga acactccaat ccaaaaaact ctcacggtca agacggacaa 
     2221 tatgcagaaa atcacgaata tagtcgggaa aatcctctat ccggcatcct tgacggaagt 
     2281 tgtattcgca ccaccaacaa acaaattcgg atacattacg cgcagttggc tctttaaagg 
     2341 gctcgtttcg ggcaaagagt cgtaatacct gctgcacgac tgaatatatt tgttcagacc 
     2401 gtcgtaaaaa agtaccatca tagtaggtaa atcgggagaa taatctatcg atatgcgacc 
     2461 ggccgggaat atatcggaca aatttttgat tcgaaatata aggcactcca tcaaataaag 
     2521 cagacctttt gtccgaagct ttttcgattc cttttctaac ctcctcatat ccaaagagat 
     2581 tagagaatct agagcgcggg cgaatcgatt ttttggcttt ataaacaaag ggaacagata 
     2641 caacactatt gagatagttc gcaacatagc tatcagcgtt gtccctcgca agttgcgtat 
     2701 cgacacgacc aagtttccag ctctgatata cagcctgtcg aatgttttgg gcgatttcgt 
     2761 ccgagtcgaa agaaaaataa gatatggaaa tgcggacgaa gggtctttgg actgtattcg 
     2821 gatacaacgt acgaatgaat tttttcatat tttccaattt tttttgataa atattttctt 
     2881 aaacgtttag aaaacaactg ataatcacga atattaatgt attttaataa tcctttaaat 
     2941 tgcgggaaag ctccgttcgc atctgtattg ttcttttttt tcaaagactc tgcaagctcg 
     3001 ggcaacatcc aaacaagctc ctcaaaatac tcatccttaa aacgctgcaa gggagattta 
     3061 cgaagaatcg aacgtaaaat atacggacga aattttgaac cgaaattagg atagcgcagt 
     3121 gataacgcct tataacgttc cgcctcgata aagtgcaagt gctcaagcat atacggacga 
     3181 ttaacctttg ctgacacaaa attgggaatt ttcttgttaa cacgagaatc cattaccatg 
     3241 cgggcaacaa gctgcgtgcc tatcgacttt ggggggcgca ctggcagcca ttcggttaag 
     3301 taatcgtcaa tttgtgttaa cgacattttc ggcacgtatt ccgaattgta agtaagggtc 
     3361 acaaaatagc aatacttatg attaaacttt acaaagtcac acttctgtgt agccctgtca 
     3421 gattttttta tcagacaata agggcattct ccacagtcaa ctttaacaaa atcacctgta 
     3481 tatttatttt gaataatgcg agggttttca catttattaa aatatttaaa tactttacta 
     3541 tccatgatat cttttatttt atttgggcgt taccgctaca cggtcgggct ttccggcgta 
     3601 cacggtacgc tctccaatcc ctaacgcacg caacaaagtt gctattaatt tgcgctccgc 
     3661 gcagggggaa aatacttttt ccttcaatct ttacgaaatt gcaaagatag gatattttgc 
     3721 ctaattccac caatgaacat tttatcaaaa acggttaaat aatgcacgcg cgctaaacgc 
     3781 acgcgcaaga tttaacagtt ttgaataaaa taacccttgg tgaaattatt caaaatgcct 
     3841 gtgtgatgca atgtcggaaa gaaaaaagaa aaaattattt tctatcaatg ctgtgcacag 
     3901 gcattttgta catggcaaag cgtgctacga cctatcaaac aaattaaact cgatacctgt 
     3961 tttatcacat tcctcgactt tttgaaaaat gactacacaa tcctgtctcg taagctcacg 
     4021 ctctacaagg tcacaaacaa caaccttatc agtgtcaacc aattgtggta cacttgcttt 
     4081 cgcaccatct ttactttgta cattcatcaa taaatacata atgttaaaat ttatatagtt 
     4141 aataaatata tacgaagggg cgctttaagc tagcggtcca acgcccgagt atattgttaa 
     4201 tattatcacc ttttccgaat tacaaaagta gggaattacc tggaaaccta caaattattt 
     4261 tatatgttat aaaacataaa acagcatttt tactagtgtc acttttgcag atttcggacg 
     4321 agaaggggat gaatcggggt agatgtgaaa cccgatttgc tccgcacaaa agcaaagact 
     4381 acgtataaat aaaaaatagc cccgtttcat aacggagcta aatttaatac gggaaaaatg 
     4441 atattaacgc ttatatttac gggtctttct acgagtaccg cgagctttgt cgaattgttc 
     4501 gtattcctcg tagtcggaag tatatggacg gttacgttca taacgtccat tttcataagt 
     4561 attaaatgta ttcatagcat cagaagagcc acgcaacaaa gcattagcag agtttatcgc 
     4621 ctcacgccaa gcttgcattt cattatccca acgtttagaa ttaagaagtt cacccgtaag 
     4681 ttgattctgc cattgattac ccataaaatc agacgcagca tcctgcttta cattctttcc 
     4741 gcgatacata ttataagtac cctcataata attcgctgca ttagtagcat aaataagatt 
     4801 attagcggta cgtttggcaa tcctattaga aatcttctgt ccattagcac gggca 
//
