FEATURES             Location/Qualifiers
     gene            41..622
                     /locus_tag="Alpa_01"
     CDS             41..622
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MKNYIHTLWESTDPSLSAHISISYFSLTPTNSPRILSELLIHVGNLDVSIALRPEERLSRTLRDILIVLHLFPYISKKIAAFVLLHDSLTALDFSSFHLPLKKVGKETFLSSLMESACRSMASIELFGHGARLSIPAFFDPSHIAVVLYLNMLRYYDMLGISASGQPTGNLPSSVSPSSSMTTTSRLTDKARQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            775..1089
                     /locus_tag="Alpa_02"
     CDS             775..1089
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MGFSLFSPRVDYNRIHSAIKLSKEFFDVREKQSLQNLFSDSQSFESDWSDIFWNQTEERQREFAESGLGSACRSELSALVHSKVKHRHLNDMNNFFTERANYNV"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1082..1303
                     /locus_tag="Alpa_03"
     CDS             1082..1303
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MSSRRPYKAYLYQSSNMLEDNQFYLVTEIYLNARSFVEFSHKISKLNQILSDSHYAESFYSVVNLGDIYYRET"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1308..3251
                     /locus_tag="Alpa_04"
     CDS             1308..3251
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MASNLFSFGDVRNHPHRSGFDLSRRICFTSKAGELLPVYYKLVYPGDKFQIRHQLFTRTQPVNTAAYTRIREYLDWYFVPLRLINKNLPQALMNMQDNPVQASGIVSNKIVTSDIPWTLLGHDSKPLGIANLLFRMYKGDSSAQIDPVLNFFGFNSGTLGAKLAMMLRYGNFISKDYSASTPGDLSFGLSKSDFDLRAYNSSYAVNILPFAVYQKIYADHFRFSQWEKNEPYTYNFDWYSGGNVFNVFALGAADSTLKTYLEGNNLFTLRYANWPKDLFMGVMPNSQLGDVSVVDITTDSATRSYPVSLFSSASGPNGINKLGAAIPDAPFNEATDTPSTYNFSIDFGTEKWDSSIKAKTWVGVNNVGSGVLGVTVPGSQLAASFSVLQLRMAEAVQKYREVSQVADQTVRDQIYAHFGVSLSPALSDTCFRVGGSASNIDISEVVNNNLAGENQADIMGKGVGTGQGGTSFSSDEYGVLMAIYHVVPLLDYVITGQPHELLYTNTSDLPFPEFDSIGMQSLHFGRFFNYKSDKFTFDPTASVMGYVPRFIDLKTDYDEVYGAFRSTLKSWVAPLDPEYLSKWIDSTVSAGQTYYSLNYGFFKVNPSVLDSIFKVKADSSMDTDQFLSSLYLDVKAVRNFDYDGMPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /inference="similar to AA sequence:INSD:CDL65742.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3296..3673
                     /locus_tag="Alpa_05"
     CDS             3296..3673
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MASAVAVVIQPIESLRFYTDEDGCVHMNSDVNLLMNAERIRNQIGEENYLNIVRSIQPSRSPYKQKLDDDALISTLKSRYLQSPAEIDAWMASLDQKYEDMVAEVKAAAAASQAPDDSQPAQSTE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 gtacgtaagc agatcttgct tcgtgattta aattctgatc atgaaaaatt acatacatac 
       61 attgtgggag agtacggacc cgtctctttc cgcccacatt tccatatctt atttttcttt 
      121 gactccgaca aactcgccaa gaattttatc cgagttgtta attcatgttg gaaatttgga 
      181 cgtgtcgatt gctcttcgtc cagaggaaag gctgagtcgt acgttgcggg atatcttaat 
      241 agttttacat ctcttccctt acatttcaaa gaaaatcgct gcattcgtcc ttttgcacga 
      301 ttctctaacc gctttggatt tcagttcttt tcatcttccg ttgaagaaag taggaaagga 
      361 gacttttcta agctccttga tggaatcagc gtgccggtca atggcaagta tagagttatt 
      421 cggccatgga gctcgattat cgatacctgc ttttttcgac ccgtcgcaca tagccgtcgt 
      481 actgtatctg aatatgttgc gatattacga tatgctcgga atatctgcca gcggccagcc 
      541 tactggaaat cttccctctt ctgtatcccc aagctcatct atgaccacta cttctcgtct 
      601 gaccgacaaa gccagacagt gaaagagttg tctaaagatt ctgtcatgac cgacattatg 
      661 cagtttcttc atatcgatcc tactcgaggt gctcttggtg atgagttttt taagcgttct 
      721 ttttgtagtc gtttttatat attttttcgg cattgcgaga tttttctgtc ctcgatggga 
      781 ttctctctct tctctccgcg agtagattat aataggattc attccgcgat taagttatct 
      841 aaagagtttt ttgatgtcag agaaaaacaa agcctccaaa atcttttttc agattctcag 
      901 tcttttgaaa gcgattggtc ggatattttt tggaatcaaa ccgaagaaag acaaagagaa 
      961 tttgcagagt ccggattagg ttctgcgtgt cgttctgaac tttctgctct tgtacattcg 
     1021 aaggtgaagc atcggcattt gaatgatatg aataattttt tcacggagag agctaattat 
     1081 aatgtctagt cgtcgtcctt acaaggcgta tttgtatcag tcttccaata tgttggaaga 
     1141 taatcagttt tatcttgtga ctgagattta tttgaatgct cggtctttcg tggaattttc 
     1201 tcataagatt tcaaaactga atcagatcct ttcggattct cattatgcgg aatcttttta 
     1261 ttctgttgtt aaccttggcg atatttatta tcgcgaaact taattttatg gcttcaaatt 
     1321 tattttcttt tggagatgtt cggaatcacc ctcacaggtc cggtttcgat ctttctcgtc 
     1381 gtatttgttt taccagcaag gctggtgaac ttttgccagt ttattataaa ctggtttatc 
     1441 cgggtgacaa atttcaaatt cgtcatcagt tgtttactcg tactcaaccc gttaatacgg 
     1501 ctgcgtatac tcgtattcgt gaatatttgg attggtattt tgttccgttg cgtttaatta 
     1561 ataagaacct cccacaggct cttatgaata tgcaggacaa tcctgttcag gcgtcaggta 
     1621 ttgtgtctaa taagattgtc acgtctgata ttccttggac tcttttaggt catgattcta 
     1681 agcctcttgg tattgctaat cttttgttta ggatgtataa aggagattct tccgcccaaa 
     1741 ttgatcctgt attaaatttt tttggtttta attctggaac tcttggagct aagctggcta 
     1801 tgatgcttcg ttatggtaat tttatttcta aggattattc cgcttctact cctggtgatc 
     1861 tttcttttgg tctttcaaaa tctgattttg atttgcgtgc ctacaattct tcttatgctg 
     1921 taaatattct tccttttgct gtttatcaga agatttatgc ggatcatttt cgtttttctc 
     1981 aatgggaaaa gaatgagcct tatacctata attttgattg gtattctggt ggaaatgttt 
     2041 ttaatgtctt tgctcttggt gctgctgatt ctactttaaa aacgtatctt gaaggtaata 
     2101 atctttttac tcttcgttac gccaattggc cgaaagacct ttttatggga gttatgccta 
     2161 attctcagtt aggtgacgtt tctgttgtag atattactac tgatagtgct actcgttcat 
     2221 atcctgtttc tttgttttca tccgcttcgg gtcctaatgg aataaataaa cttggtgctg 
     2281 ctattcctga tgctcctttt aatgaagcta ctgatacacc ttctacttat aatttttcta 
     2341 ttgattttgg tactgagaag tgggattctt ctattaaggc taaaacatgg gttggtgtta 
     2401 ataatgttgg ttctggagtc ttgggagtta ctgtccctgg ttctcagtta gctgcttctt 
     2461 tttccgttct tcagcttcgt atggctgagg ctgttcagaa gtatcgcgag gtttctcagg 
     2521 ttgctgatca gactgtccgt gatcagattt acgctcattt tggtgtgagt ttgtctcccg 
     2581 ctctgtctga tacttgtttt cgtgttggag gttctgcatc taatatagat atttctgagg 
     2641 ttgttaacaa taatcttgct ggtgaaaatc aggctgatat tatgggtaaa ggtgttggta 
     2701 ctggtcaagg tggaacttct ttttcttctg acgaatatgg tgttttaatg gctatttatc 
     2761 atgttgttcc gcttttggat tatgtgatta ctggtcagcc tcatgaactt ttgtatacaa 
     2821 atacgtctga ccttcctttc cctgagtttg attctattgg tatgcagtct cttcattttg 
     2881 gtcgtttttt taactataaa tccgataagt ttacttttga tcctactgct tctgtgatgg 
     2941 gttatgttcc taggtttatt gatcttaaaa ctgattatga tgaagtttac ggtgctttcc 
     3001 ggtctacttt gaagtcttgg gttgctccct tggatccgga atatttgtct aaatggattg 
     3061 atagtactgt ttctgctggt cagacttatt attctttgaa ttatggtttc tttaaagtaa 
     3121 atccgtctgt tttggatagt atttttaaag ttaaagctga tagttcgatg gataccgatc 
     3181 aatttttgtc ttcgttgtat ctggatgtta aggctgtccg gaatttcgat tatgatggta 
     3241 tgccttatta aatgtgtttg ttatgagtaa aagtagtgtt tttgttattt ctggaatggc 
     3301 ttcggctgtt gctgttgtta ttcagcctat agagtctctt cggttttata ccgatgaaga 
     3361 tggttgtgtt cacatgaatt ctgatgtcaa tttgcttatg aatgctgagc gtattcgcaa 
     3421 tcagattggt gaggagaatt atttgaatat tgttcgttct attcagccct ctcggtctcc 
     3481 ttataagcag aaattggatg atgatgcgtt gatttctact ttgaagtctc gttatcttca 
     3541 gtctccggcc gagatagatg cttggatggc ttctcttgat cagaaatatg aggatatggt 
     3601 tgccgaagtt aaggcagctg ctgctgcttc tcaggctcct gatgattctc agcctgctca 
     3661 atctactgaa taatgggacc acttgttagt gccgcgctta ttgaaggtgg ttccggactt 
     3721 cttggttctg tttttaatgg cagcatgaat aagcgtgctg ccaaggctta taataaaggt 
     3781 cagaa 
//
