FEATURES             Location/Qualifiers
     gene            complement(145..606)
                     /locus_tag="Alpa_01"
     CDS             complement(145..606)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MKKKEYIDHVFNGSFDILHTKVPVQDKLMQLSTVVNKDGSIVISNDISLIFNQQRLENKLTASELREYIQRYTPNKSVYTAQLDDDTLLNTLKSRHIQSLSEMRSWAEYCMENYDSLIKDVEEKARLAAEENAAAEGNAAAGASSSSASSTSE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /inference="similar to AA sequence:INSD:WP_004291033.1"
                     /inference="similar to AA sequence:INSD:WP_008775337.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(608..2404)
                     /locus_tag="Alpa_02"
     CDS             complement(608..2404)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MSLFSLKDIRNHPRRSAFDLSSKVAFSAKSGELLPIKWYFTMPGDKFTLKRQHFTRTQPVNTSAYTRIREYYDWFWVPLHLLWRHAPEVISQMQSNVQHAGSQTSSLTLGNYLPTISSSQLSAVCSRLFGKKNYFGYDRSDLSYKLMQYLRVGNSGQVSVNFGTSLPASDTSYTQAYRFNLDLSLFPFLAYKKFCQDYFRYSQWQDSSPYLWNIDYFTGVSSHLFSSLPVSSDPYWNNNTLFDLEYCNWNKDMFMGVFPDTQFGDVATIGITSDSPESSLQLKAWASGSPSSKAPVVVGAAASSPNFTIRAESGNMNPANILGVDTSSLSLAGSFDVLALRRGEALQRWKEISLNVPQNYRAQIKAHFGVDVGENMSGMSTYVGGDSSSLDISEVVNTNLQSGDVASEAVIAGKGVGSSQGSEKFEARDWGVLMCIYHNVPLLDYVSSAPDPQFFVTQNTDLPIPELDSIGMQSVPLAMYTNSDGELVSGFVSPDYTMGYLPRYFSWKTSYDYVLGAFTTTEKEWVAPISSALWKNMLSTITVRNPQFTYNFFKVNPSVLDSIFQVNADSKWDTDPFLINCAFDVKVVRNLDYSGMPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_008775336.1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2408..2611)
                     /locus_tag="Alpa_03"
     CDS             complement(2408..2611)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MKITPQQWIEVVKLISTFIIGLITALCIHSCTASMSVFWKNSNSNQESQQTTRQSVDSTRIDVQPNF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2626..4389)
                     /locus_tag="Alpa_04"
     CDS             complement(2626..4389)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MADKVRNFFNRCEHPRIIKNKYTGEPVYVECGSCPHCLISRSDAKRNLCDYEKWNRKYCYFVTLTYNSQYVPKMALVPITDYEFDYPIGKNWPCVKTQLHMRLMLDPRVKKTEMFSQETRMRARRPVGDSLINMFTCKVNKPYIDEHLKAIFDSCAAAVEFRKNYKPTYQSPARPYILRTIPRISKLQKFNDVQREELVWLSPEKVEMLKKKSKCEGDNNAFPQFKGLLKYINYRDYQLFAKRFRKYLFTRIGSYEKISSYVVSEYSPKTFRPHFHILFFFDSDEVAKNIRQAVFQSWKLGRVDTQLARDSAGSYVSGYLNSVVSLPGIFTDVSFTKNKSRFSKLFGYESFRQTIKTPEQAIERLSERILFVRNGKPCEFTPPFSYISRLLPRFVPYSSNFVVETRTVLRSIRGVLQLFRRNEPFKKETPTNISEFVHTYTVTLYEKYGYCYDTLPECLRVYLSYTRSVKEIHYFTDKLKNKLCRPLYIYRIWESLGLSDDCIISLSDEYMSRCRSMSLEKQLSIQQEMFEREGYSDELLSLFYINKPQKKVNNRYFQEWKDKNYYEVHYIRVKHKKLNDENNVFLE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_004291031.1"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /db_xref="eggNOG:bacteNOG07343"
                     /db_xref="eggNOG:bctoNOG24068"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4628..4816)
                     /locus_tag="Alpa_05"
     CDS             complement(4628..4816)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="VQPKDGGKPSNPMLVNANGSDLCCLVGEFLCTGDKVLIFQSVTEYKATPCETDPCVESFKKE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4922..5128)
                     /locus_tag="Alpa_06"
     CDS             complement(4922..5128)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MEKKLRFVNVVACSNLGTRIRLTLSSETDDLRQLVADALIRIGQYGSSQETFLVQHIDSAPPLYDMRE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5131..5316)
                     /locus_tag="Alpa_07"
     CDS             complement(5131..5316)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MIMKTERKFTWCVRFYNVKTGAIDYLMYFDWSARAINEFITDFVDSNKDYVVRAFKQYKKF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5576..6460)
                     /locus_tag="Alpa_08"
     CDS             complement(5576..6460)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MNEAQAGTATGMSGTSAASAAGAAPQIPYTPDFQSVGVNLASALKMMSEKKKTDIENLNMSDLLRSQIWQNLGATDWRNASPEARAYNLSQGRRAAELGMASLEENLSNQRWSNNLLVANIANSLLDADTKTILNKYLDQQQQAELNVKAANYEYLVMSGQLKRQEVNNLIAEEIETYARANGYNLQNRILRETSDGLIRATNNTNFYFGSYYHSRAFNAGADAFHDSSILRSRAGSASESYKQSAFDTKLQPWREALNSTNMIFNGIGSGLDSYTNFQNGRYYRGNKGRFSNR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 cacgagcatt aaaatcatta ttcatttggt ttatcttaag attagtctta ttagtatcgg 
       61 ccgtagtttt agcaccaata gcaccagaaa ttacagaacc aagaccacca aataatccgc 
      121 tagcaaagtc tttaaatgcc ataactattc agatgttgaa gatgctgaag aagaagaagc 
      181 accagcagca gcatttcctt cagcagcagc attttcttca gcagcaagac gggccttttc 
      241 ttcaacgtct ttaattaatg aatcataatt ttccatacaa tattcagccc atgatcgcat 
      301 ttcagacaac gattgaatat gtcttgattt aagagtattc aaaagagtat catcatccaa 
      361 ttgagcagta tataccgact tattaggagt ataacgctga atatattcac gtaattcact 
      421 agcagtcaat ttattctcca atctttgttg attgaatatc aacgaaatat cattagaaat 
      481 aacgatagaa ccgtctttat ttacaacagt agacaactgc attaacttat cttgtacagg 
      541 tacttttgtg tgcaaaatat caaaagaacc attaaaaaca tgatctatat attctttctt 
      601 tttcatatca ataaggcatt ccggaataat ccaaattacg aactacttta acatcaaacg 
      661 cacagttaat caagaaagga tctgtatccc attttgaatc ggcattcact tgaaagatac 
      721 tatcaagaac agaaggattc actttaaaga aattataagt aaactgagga ttacgcacgg 
      781 taatcgtaga aagcatattc ttccaaagag cggaagaaat aggcgcaacc cattctttct 
      841 cagtagtagt aaatgcacct agcacataat catacgaagt tttccaagaa aaataacgag 
      901 gaagataacc catagtataa tcaggagaga caaatccaga aaccaattct ccatcagaat 
      961 tagtatacat agcaagcggg acagactgca taccaataga atcaagttca ggaataggca 
     1021 aatccgtatt ctgagtaaca aaaaattgtg ggtcaggagc tgaagagaca taatccaata 
     1081 aagggacatt atgataaata cacatcaata caccccaatc acgagcctca aatttttcag 
     1141 aaccttgcga agagccaaca cccttaccag caataacagc ctcagaagca acatcgccag 
     1201 actgaagatt cgtattaacg acctcggaaa tatcaagtga agaagaatca ccaccgacat 
     1261 aagtagacat acctgacata ttttcaccaa catcaacgcc gaaatgagct ttaatctgtg 
     1321 cacggtaatt ctgtggaaca ttcaaagaga tctccttcca acgctgaaga gcctcaccac 
     1381 gacgaagagc aagaacatca aatgaaccag ccaatgacaa agatgaagta tcaactccaa 
     1441 gaatattcgc aggattcata ttacccgact cggcacgaat agtaaaatta ggagaagaag 
     1501 cagcagcacc aacaacaaca ggagccttac tacttggaga accagacgcc caagccttca 
     1561 actgcaaaga agattcagga gaatcactag taataccaat tgttgctaca tcaccgaatt 
     1621 gagtatccgg aaacacaccc ataaacatat ccttgttcca attacaatac tcaagatcaa 
     1681 acaatgtatt attgttccaa tagggatcag aagaaacagg caaagaagaa aacaggtgag 
     1741 aagaaacacc ggtaaaataa tctatattcc acaaatacgg ggatgaatct tgccactgag 
     1801 aataacgaaa atagtcttga caaaatttct tatatgccaa gaacgggaat agactcaagt 
     1861 caagattaaa tcggtaagcc tgagtgtaag aagtatccga agcaggcaaa gaagttccaa 
     1921 aattaacaga aacctgacca gaattaccaa cacgaagata ttgcattaac ttatacgaaa 
     1981 ggtcggaacg gtcataacca aaataatttt ttttaccaaa aagacgcgaa catacagcgc 
     2041 taagttgact agacgaaata gtaggcagat aattacccaa agttaacgaa gaagtctgcg 
     2101 aacctgcatg ctgaacatta gattgcattt gagaaataac ctcaggagca tggcgccaaa 
     2161 gaaggtgcaa aggaacccaa aaccaatcat aatactcacg aatacgagta tacgcagagg 
     2221 tattaacagg ctgagtacga gtaaaatgct gacgtttcaa tgtaaattta tcaccaggca 
     2281 ttgtaaaata ccatttaatc ggaagaagtt cacccgattt tgcagaaaaa gcaaccttag 
     2341 acgaaaggtc aaatgccgaa cgtctaggat gattgcgaat gtcttttaac gaaaataaac 
     2401 tcataaatta aaaatttggt tgaacatcaa tacgagtaga atcaacagac tgacgcgtag 
     2461 tctgctgact ctcttgatta gaattactat ttttccagaa tacagacata gacgcagtac 
     2521 aagaatgaat acacaatgcc gtaataagac caataatgaa agtagaaatc aatttaacta 
     2581 cttcaatcca ttgttgaggt gtaattttca taactataaa gataattatt ctagaaatac 
     2641 attattttca tcatttaatt tcttatgttt aacgcgaata taatgtactt catagtaatt 
     2701 cttatctttc cactcctgaa aataacgatt attaactttt ttttgaggtt tattaatata 
     2761 aaacaaagac aaaagttcat ccgaataacc ttcacgctcg aacatttcct gctgaatact 
     2821 caattgtttt tctagggaca tagaccgaca cctagacata tattcatcag ataaagaaat 
     2881 aatgcaatca tcagaaagac caagagattc ccaaatacga tatatataaa ggggacggca 
     2941 aagtttgttc ttaagtttat cagtgaaata atgaatctct ttaacagaac gcgtataaga 
     3001 aagataaaca cgaagacact cagggagagt atcataacaa tatccatact tttcatacaa 
     3061 tgtcactgta taggtgtgaa caaattcgga tatgtttgta ggagtttctt ttttaaaggg 
     3121 ttcatttcgt ctaaagagtt gtaaaactcc acggattgaa cgcagaactg ttcgagtttc 
     3181 gacaacaaaa ttactgctgt acggtacgaa tcgtggcaat aatctagaga tatacgaaaa 
     3241 ggggggagtg aattcacaag gcttgccatt acggacaaag agtattcgct cagataggcg 
     3301 ctcgattgct tgttcaggtg tcttaattgt ctgtcgaaag ctttcatatc caaataattt 
     3361 gctaaaccgc gacttatttt ttgtaaatga gacgtccgta aaaatgccgg ggagagacac 
     3421 aacgctatta agatagcccg atacgtagct accggcggaa tcccttgcaa gttgcgtatc 
     3481 gacacgaccg agcttccaac tctgaaatac agcttgtcga atatttttgg cgacttcgtc 
     3541 cgagtcgaag aaaaataaga tatggaaatg cgggcggaat gtcttaggag agtactccga 
     3601 aacaacgtat gaagatattt tttcatatga accaattctt gtaaataaat atttgcgaaa 
     3661 acgtttcgca aaaagttgat aatcacgata atttatatat ttaagaagtc ctttaaattg 
     3721 aggaaaggca ttattatctc cttcacattt tgacttcttt ttaagcatct caaccttttc 
     3781 aggggaaagc caaaccaatt cctcacgctg aacatcatta aatttctgca acttagatat 
     3841 acgaggaata gtgcgaagaa tataaggacg agcaggagac tgatacgtag gcttataatt 
     3901 ctttcggaac tcaacagcag cagcacaaga atcgaatata gccttcaaat gttcatcaat 
     3961 gtaaggttta tttactttac aagtaaacat attgatcaga gaatcaccaa caggacgacg 
     4021 agcacgcata cgagtctctt gagaaaacat ttccgttttc ttgacacgag gatcaagcat 
     4081 aagacgcata tgcaactgag tcttaacaca aggccaattc ttacctatag gataatcgaa 
     4141 ttcataatcc gtaataggaa caagtgccat tttcgggacg tactgcgaat tataagtcaa 
     4201 tgtcacaaag taacaatact tgcgattcca tttttcataa tcacataaat ttcttttcgc 
     4261 atcagaacgc gaaatcaaac agtgcggaca agatccacac tcaacatata caggttcacc 
     4321 cgtgtactta ttttttatta tgcgaggatg ctcacaacga ttgaaaaaat tacgaacttt 
     4381 atcagccata taccgtcgtc tttaaattca gggacgaata cttttacttt taatcttatg 
     4441 aaattgcaaa gataggtaaa tcgcatagaa aacaccaatc aacattgtat caaaaattat 
     4501 taaattcacg cgcgcgctac gcaagcttcg cacacacgcg atattaacaa ttttcaatac 
     4561 aataacgctt ggtgcaatct atacgatttg tcaacgaaat gcaatatcag aagaagaaaa 
     4621 agaaaaacta ttctttttta aaagattcta cacaggggtc tgtttcacag ggagtagcct 
     4681 tatattcagt tacagactga aaaatcaaga ctttatcgcc agtacaaaga aactcgccaa 
     4741 caagacaaca caaatcactt ccattagcat taactaacat tgggttagaa ggttttccgc 
     4801 cgtctttcgg ctgcacagtc actaaaagtt tcataatcat aaaattaaaa tttaaattgt 
     4861 tagtaatata aatataataa aagtaaaccc gcgattaagc gcgcgaaatc cacgcgggga 
     4921 actattctct catatcgtac aaaggaggtg cagaatctat atgctgaacc aaaaatgtct 
     4981 cctgagaaga accatattgc ccaatcctga taagagcatc agcaacaagt tgacgaagat 
     5041 cgtcagtctc agaagaaaga gttaaccgga tacgtgtccc taaattggaa cacgccacaa 
     5101 cattaacaaa tcgaagtttc ttttccataa tcaaaatttt ttatactgct taaatgcgcg 
     5161 aacaacataa tctttattag aatcaacgaa atcagtaata aattcattaa ttgcacgagc 
     5221 tgaccagtca aaatacatta aatagtcaat tgcgcctgtc ttaacattat aaaatcgaac 
     5281 gcaccaagta aattttcttt ctgttttcat aatcatatct ttttttatta cactacaaag 
     5341 ataaagggat ataaacaaag aaccaaatta aattatatgt tatacaacat attttgcatt 
     5401 tttattggtg tcacttttgc caatctcgga cgagaagagg tggaatcggg ctagatgtga 
     5461 cacccgattt gctagcgcac aaaagagaac agctattaaa ataaaatgca ccgacttatc 
     5521 acaagtcagt gcatcaagac aatattaaaa tatacaatac gaaaacgaaa acaaactatc 
     5581 tattagagaa tctaccttta ttaccacgat aataacggcc attttgaaag tttgtatagg 
     5641 aatccaatcc ggaaccaata ccgttaaaaa tcatattagt agaattaaga gcctcacgcc 
     5701 acggctgcaa cttcgtatca aaggcagatt gcttgtaaga ctcagaagca gaaccagccc 
     5761 tagaacgcaa tatagacgaa tcatgaaatg catcagcacc agcattaaat gctcgactgt 
     5821 ggtaatacga gccaaaataa aaattagtat tattagtagc acgaatcaaa ccgtccgaag 
     5881 tctcacgcaa aatacgattc tgaagattat acccattagc acgcgcataa gtctcaatct 
     5941 cctcagcaat aagattattg acttcttgcc tcttcagttg accagacata acaagatatt 
     6001 cataattagc cgccttaaca tttaattcag cctgttgttg ttgatcaaga tacttattca 
     6061 aaatagtctt cgtatcagca tcaagaagag aattcgcaat attagcgaca agaagattat 
     6121 tactccaacg ctggttagac aaattttctt cgagggaagc catgccaagc tcggcagccc 
     6181 tacgaccttg agaaagatta tacgcacgcg cctcaggaga cgcattacgc caatcagtgg 
     6241 caccaagatt ttgccaaatt tgagaacgta gcaaatcaga catattaaga ttctcaatat 
     6301 cagtcttttt cttttcactc atcattttca acgcagaagc caaattaaca ccaacagatt 
     6361 gaaaatcagg agtatatggg atttgaggag cagcaccagc agcagatgca gcagaagtgc 
     6421 cagacatacc agtagccgta ccagcctgag cctcattcat ataaggatta taaccagctt 
     6481 cttcctaacc ttcacgctga gaggacgcag aattatattc attttcctta ttccacatat 
     6541 ccaactgaaa a 
//
