FEATURES             Location/Qualifiers
     gene            68..988
                     /locus_tag="Alpa_01"
     CDS             68..988
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MTSNGANHLVPASGNTLGAPKTDEDNGKPRVLLGKDAGGVSTWVPMEARLDNATSATINQLRQAISVQQYYEALARGGSRYREQIRAIWDVIISDKTVQVPEYLGGGRYHVNINQIVQTSGQQTSNDTPIGETGAMSVTPINESSFTKSFEEHGFVIGVCCVRHNRSYQQGLERFWSRKDRLDYYVPQFANLGEQPVKKKEIMLTGDTTDDETFGYQEAWADYRMKPNRVSGLMRSNATGTLEFWHYADNYAKVPTLSQEWMAEGKEEIARTLIVEDEPQFFGAIRIANKTTRRMPLYSVPGLYKL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65804.1"
                     /inference="similar to AA sequence:INSD:CDL66947.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1028..1447
                     /locus_tag="Alpa_02"
     CDS             1028..1447
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MAFSLLGALGTIGNVAGTVGTVANAVGALGNAFGAWGQVGQSQSQGGSTQQGGGSSQSMSKSGTNDEQVMQYLKGAYQYQNAEGQRQSQFNQRSMLEQMGYNTLGAIAQGIYNHIENSAAMNFNSNGSNEKQRMARTHV"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 17 and 18 "
                     /inference="protein motif:SignalP:4.0"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /note="1 probable transmembrane helix predicted by TMHMM
                     Signal peptide predicted by SignalP 4.0 (Signal peptide probability ) with cleavage site probability  between residues 17 and 18"
     gene            1710..1922
                     /locus_tag="Alpa_03"
     CDS             1710..1922
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MTPLGLQETLSDIGKNAGNAIDNAIGAGRKAGEKLRGNMNKAMDNIKNGHGIDNITGNRNRAGGGAGRRK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 gccgctaact ggaaatgcaa gaatagaatg gagtttttca gcacaagaac tgcaggaata 
       61 cggaatcatg accagcaacg gtgcaaatca tcttgtaccg gcaagcggaa atacattagg 
      121 agcacccaaa acagacgaag ataacggaaa gccaagagta ttgctaggaa aagacgcagg 
      181 cggagtgtct acatgggtgc caatggaagc aaggctggac aatgcaacat cggcaacaat 
      241 caaccagtta agacaggcta tcagcgtaca acagtactat gaagcactag caagaggtgg 
      301 atcaagatac cgcgaacaga tacgagcaat ctgggatgta atcatctcgg ataaaacggt 
      361 acaagtgcct gaatatctag gcggtggacg ctatcacgtg aacattaacc agattgtgca 
      421 aacaagtgga cagcagacaa gcaacgacac acctattggt gaaaccggtg caatgtctgt 
      481 aacacctatc aatgaaagtt cttttacaaa gagttttgaa gagcacggct ttgtaatcgg 
      541 cgtatgttgc gtaagacaca acagaagcta tcaacagggc cttgagcgtt tttggagccg 
      601 aaaggacagg ctggactact acgtgccgca gttcgcaaat ctgggcgaac agccagtaaa 
      661 aaagaaagaa atcatgctca ccggcgatac aaccgacgat gagacctttg gttatcaaga 
      721 agcatgggca gactatcgga tgaagccgaa ccgtgtaagc ggtttaatgc gaagcaacgc 
      781 aacgggaacg ctcgagttct ggcactatgc agacaactat gcaaaagttc ctacactgtc 
      841 gcaagagtgg atggcagaag gaaaagagga aattgcaaga acgttaatcg tagaagacga 
      901 gccacagttc tttggagcaa tccgcatagc aaacaagaca actcgccgga tgccacttta 
      961 cagcgtgccg gggttgtaca aactgtaaga aaggaggaag ccgggagaaa tcccggctat 
     1021 tttaaaaatg gcattttcac ttttaggagc actaggaaca attggaaacg ttgcaggaac 
     1081 agttggaaca gtagcaaacg cagtaggagc actaggaaat gcattcggcg catggggtca 
     1141 agtaggacaa agccaaagcc aaggcggaag cacacagcaa ggcggcggaa gcagtcagag 
     1201 catgagcaaa tccggaacaa atgacgaaca agtaatgcaa tacctgaaag gcgcatacca 
     1261 atatcaaaac gcagaagggc aaagacaaag tcaattcaac caaaggtcaa tgctagaaca 
     1321 gatgggttac aacacgttgg gagcaatcgc acaaggcata tacaaccaca tcgagaacag 
     1381 cgcagcgatg aactttaact ccaacggaag caatgaaaaa cagagaatgg caagaacaca 
     1441 tgtctaacac agcctatcaa agagcagttg cggacatgaa agaagctgga cttaatccta 
     1501 tattggcatt ccagaacggc ggtgcaagca cgccgggagg tagcgcagga acaatttcag 
     1561 gagcaagcat aggtgcgcca tcgtcaagtg cgttaggagt aagcagagca agtggctttg 
     1621 tacccaactc gtactcaagt gaaagttggt cacaaagtga ttggtacaac gccgcacaaa 
     1681 gctggaatca gatgctaagc agtacaggaa tgacgccgct tggattgcaa gaaacactat 
     1741 ccgacatcgg taaaaacgca ggaaacgcaa tcgataacgc aatcggagca ggcagaaaag 
     1801 caggcgaaaa gttgagagga aacatgaaca aagccatgga caacataaaa aacggacacg 
     1861 gaatcgacaa catcacaggt aatagaaaca gagccggtgg tggagcagga aggagaaaat 
     1921 aaaaaatgag ctgttataag ccgttaatac ggatatacag cccagaaaac agagaaatta 
     1981 gcgggcaagt gtattcactt gcccgctatt ctgaaagagt gggcaaaaaa ttaaatatga 
     2041 agatttgatg tatgagccaa aaattatgtt aataccttgc gggcaatgca tagggtgcag 
     2101 aatacagcaa agagaggact ggacaacaag aatagaatta gaagcgagac aatggccaaa 
     2161 agaacaagtc tggtttatca cactaactta cgatgatgac cacgtaccag gaatgattct 
     2221 taacacaggc gaaatcatga gaaaagtgca atatgtatgg aaaccgggga aaaaaacacc 
     2281 ggaaagtgtg caaacactac 
//
