FEATURES             Location/Qualifiers
     gene            131..1240
                     /locus_tag="Alpa_01"
     CDS             131..1240
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MAGMALAAGTAGATFAQTAGQAFASSLPQMAMSAGGGLFGSISAQKQQKRAHAYNLEYMDKQFQQNKEAAAINQAYAKELWDYTSFENQRKHMEAANLNPALMYGMGGATGGSASGAGTVGGGGSLPGTNPVSAGAQAGGMSIQGAMMFSEIAKNFAQASKDEADAKKKEGVETDEARARINLINKQTEVEEEVKQLTAANYFKVLKEQDEVWQRARLLSTQADIAEKTKQAEIESVYVKNWLNTATGLEKLAQIEMHEAEAKQILEETRWIAFDMQTRRITAEAAKKRVGVMVQELEKKYKFQNQENIREWLFGSIDALAKGANSVSNFLPMGRVIKVGEKILDQAFDNKGKSKGWREITKEFTNAIE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 24 and 25 "
                     /inference="similar to AA sequence:MV_prot:putative.gpH"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE.00802"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1242..2195
                     /locus_tag="Alpa_02"
     CDS             1242..2195
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MCLYPKLIRNPKYKPTKTNGGNPPVCYDTRLLYIPAACGECYECRKKKQREYQIRLQEEIRHTHGEFLTLTIDNDWYKKLEKEIPKLPKDTIKETKINGEYDNLIATVALRKFLERCRKETGKSIKHWCITELGEENGRIHIHGIFFGENINQVIQKNWKYGFIYIGQYVNERTVMYITKYMFKQCEYNKLFKGKVLSSSGIGSGYVSRFDSSRNKYKEDGNTNETYQFRNGVKVNLPNYYRNKIYSEEEKEKLWIEKLEKGYIWVMGEKVNARNPEEFSKCLEYYQARAIKLGGAKKEDWEKSKYIRRLIRENRRR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2797..2970
                     /locus_tag="Alpa_03"
     CDS             2797..2970
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="VEQIKIKVMRTKYIIELGEKKTKEVEIYVIEGTFAEAYKAAKLFMEKNYYIKSIKEA"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2972..3166
                     /locus_tag="Alpa_04"
     CDS             2972..3166
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MKRFTIYWETPKGDEITTIEEAENLKKALRQVSYFEKKTGYEIVSIEIIKNGKEEETKILLDKQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3213..3380
                     /locus_tag="Alpa_05"
     CDS             3213..3380
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MKKGESTRVDMVNEDGEIEKIYLVERTDRRVIIKTVKDYKKEQIENENKKQLSLW"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3374..3577
                     /locus_tag="Alpa_06"
     CDS             3374..3577
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MVTKTKKEIWILILKIVAAIAAAILGVLGVQSCTMSMSIAKNNNNATQQTEQKATSEVKNDSINLKF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02719"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3582..3875
                     /locus_tag="Alpa_07"
     CDS             3582..3875
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MTEREHRVKDLFQIIRTTTHEEQEEYVIVIGKHLATEARFSTREEAEQFIESKDYDLIWALIAALIDAKDVQEMEAQQEKDVQKVENVIQKQTIKDL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3878..5776
                     /locus_tag="Alpa_08"
     CDS             3878..5776
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MAITKAIGKNTVGDGNKMTVRLNNYYRSTHDLSYVWKNTQAVGPVVPFLCEYAQIDDTHEIDLSAMVITHPTVGPLYGSFKLQLDVYVAPIRLYQKLLHNNTMGIGLDMTKVKLPVIQVDGMSTDDNPTNSNQWTQINPSALLAYLGLRGWGKIKASDISIKKNGVPLLAYWDIWKNYYANKQEPNGKVLSTYHIISKGSINGTSVDNWEKFRILKVGKNNIQISKWDNQNQELKVYEGIVHMYNNGESKRGTVRELLGEGNFDSASSFYTWSIEQKNFEGSISIMYGDSLNIIDFPITKIDEVREKILAFPSTSPYIVPNEKPYSYSERDKDGMLRTKQPMYGLAVKTYQSDIFNNWIQTEWLEGENGINAITAVDTSIGSFTMDTLNLAKKVYNMLNRIAVSDGTYKSWMETVFSAKYVERTETPIYYGGMSQEIIFEEVVSTSATGEEPLGTLAGKGRLAPNKKGGKVVIKIDEPSYIIGICSITPRLDYSQGNNFTMNWETMNDLHKPALDMIGYQDLTMEKAAWWTEEHTSDTEFAQKSIGKTVAWVDYMTNYNKNYGNFASGENENFMTLDRNYNVENPDFTTYIDPAKYNGIFADQSRSSMNFWVQIGVNWKVRRKISAKSIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /inference="similar to AA sequence:INSD:AGT39863.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            5824..6072
                     /locus_tag="Alpa_09"
     CDS             5824..6072
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_09"
                     /translation="MKGVEIKEGETIETKVRRITEEKTPITDSAPIVYTNRTDGVIAGYNIRTDRFEIALSAMDKVNKAKIATRNAKNKVRGIRYK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 cattaaagat gaaccgaccg aaggatgtaa aaaaaaagtc ccttcggtac gcatgtagta 
       61 ttatatatct agtatattgt agaactcttt taaaaaagag cgaaaattgt aaacttaaat 
      121 tattaaaatt atggcaggaa tggcactagc agcaggaaca gcaggagcaa catttgctca 
      181 aacagctgga caagcattcg caagctcatt gccacaaatg gcaatgtcgg caggtggagg 
      241 gttattcgga agtatctcag cacaaaagca acaaaaaaga gcacatgctt ataatctcga 
      301 atacatggat aaacagttcc agcaaaacaa agaagccgca gcaatcaatc aagcttatgc 
      361 aaaagaactc tgggactata caagtttcga aaatcaacgt aaacacatgg aagcagcaaa 
      421 tctgaatccg gcactaatgt acggaatggg aggagcaaca ggcggaagtg catccggtgc 
      481 tggaacagta ggcggaggag gaagtttacc aggaacaaat cctgtaagtg caggagcgca 
      541 agcgggtgga atgtcaatac aaggagcgat gatgtttagc gaaattgcga aaaactttgc 
      601 acaagcaagc aaagacgaag cagatgcaaa gaagaaagag ggcgtagaaa cagacgaagc 
      661 acgtgcaaga atcaacttga taaacaaaca aacagaagta gaagaagaag taaagcaatt 
      721 aacagcggca aactacttca aggtactcaa agaacaagac gaagtttggc aaagagcaag 
      781 actcctctca acacaagcgg atatagcaga aaaaacaaaa caagccgaaa tagaaagcgt 
      841 atacgtaaaa aattggctca atacagcaac aggactcgaa aaacttgcac aaatagaaat 
      901 gcatgaagca gaagcaaaac aaatcctaga ggaaacaaga tggatagcgt ttgatatgca 
      961 aacaagaaga ataacagcag aagcagcaaa aaaaagggta ggagtaatgg tgcaagaact 
     1021 agagaaaaaa tacaaattcc aaaatcaaga aaatataaga gaatggctat ttggaagtat 
     1081 tgatgctcta gcaaaaggag caaacagtgt atccaacttc ttaccaatgg gaagagtaat 
     1141 taaagttgga gaaaaaattc tagaccaagc cttcgacaat aaaggaaaat cgaaaggatg 
     1201 gagagaaatc acaaaagaat tcactaatgc aatagaataa tatgtgttta tatccaaaat 
     1261 taataagaaa tccaaaatac aaaccaacaa agacaaacgg gggaaatccc cccgtttgtt 
     1321 atgatacaag acttctatat atcccggcag catgcggaga atgttacgaa tgcagaaaaa 
     1381 agaaacaaag agaatatcaa ataagattac aagaggaaat aagacatacg cacggagaat 
     1441 ttttaacatt aacaatagat aatgactggt ataagaaact agaaaaagaa ataccaaaat 
     1501 taccaaagga cacaatcaaa gaaacaaaaa taaatggaga gtatgacaat ttaatagcta 
     1561 cagttgcatt aagaaaattt ctagaaagat gcagaaaaga aacaggaaaa tctataaaac 
     1621 attggtgtat aacagagtta ggagaagaaa acggaagaat acatatacac gggatattct 
     1681 tcggggaaaa cataaatcaa gtaatacaaa aaaattggaa atatggattt atatacatag 
     1741 gacaatacgt aaacgaaaga actgtaatgt atattacaaa atacatgttc aaacaatgtg 
     1801 aatacaataa attattcaaa gggaaagtgc tttcaagtag cggtattggg tcggggtacg 
     1861 tttcccgttt cgattcctcg cgcaataaat acaaagaaga tggaaataca aatgaaactt 
     1921 accaattcag aaacggggta aaagtcaacc ttccaaatta ttacaggaat aaaatttatt 
     1981 cagaagaaga aaaagagaag ttatggatag aaaaactaga gaaaggctat atttgggtaa 
     2041 tgggggaaaa agtaaacgca agaaatccag aagaatttag taaatgttta gaatattatc 
     2101 aagcgcgagc cataaagctg ggtggagcaa aaaaagaaga ttgggaaaaa tcaaaatata 
     2161 tcagaagact gataagggaa aataggaggc gttaaaacgc caacccttcg gcattggacg 
     2221 ccgtgcggaa tgcgctatgc agcgtgtacc gtgcggcgtg ctttttgtca cctacggcga 
     2281 ccgaaaaccc taagggtttt ccatcctttc cttcttcggt gtataacggg aatcgactct 
     2341 cctgtttgtc cgaaggctag ctaccttctc gaagcggttt gtagtctgga gtgcacccgc 
     2401 cagacaagct ggcgtggtgt gcgcctccgg cgatactaag gtgctagtcg ctacgggcgt 
     2461 ttccacgccc tgtgcccgag gagcgctcaa acgtcgcgca ggcttaccat tcggcattgg 
     2521 acaccatgcg gaatgcgcta tgcagaatac gccatgcggc gtggtaatta tgtgacacac 
     2581 tccgagaatt acggagtgaa agagaaaagg atagaaaaaa aaatgaagaa ataatttaca 
     2641 caaattggta aattagtcac ataaaattct cttaagatta agaattttaa gaaaaaaaga 
     2701 gaaggaaaaa tttgcagata aaaataaaat gcttatcttt gtcatgtgaa aaaaaaacaa 
     2761 gaaaaataag aaaaaaattt acaaacaatg ttccacgtgg aacaaataaa aatcaaagtt 
     2821 atgagaacaa aatacattat cgaattagga gaaaaaaaaa caaaagaagt agaaatctat 
     2881 gtaatagaag gaacatttgc agaagcttat aaagccgcaa aattattcat ggaaaaaaat 
     2941 tattatatta aatcaataaa ggaagcataa aatgaaaaga tttactattt attgggaaac 
     3001 tccaaaagga gacgagatta caacaatcga agaagcagaa aatctgaaaa aagcattaag 
     3061 gcaagtaagc tactttgaga aaaaaacagg ttatgaaatt gtaagtatag aaataattaa 
     3121 aaatggaaag gaggaagaaa caaaaatttt attggataaa caataaagaa ttcaaaacat 
     3181 atgggagaat gaaagagtac acattcttcc atatgaagaa aggagaatca acacgggttg 
     3241 atatggtaaa cgaggacggt gagatagaaa aaatctatct agtcgaacga actgatagac 
     3301 gtgtaattat aaagacggtt aaagattaca aaaaagaaca aatagaaaac gaaaacaaaa 
     3361 aacaactgag tttatggtaa caaaaacaaa aaaagagatt tggattttaa tattgaagat 
     3421 tgttgcggca atcgccgctg caatcttagg agtattagga gtacaatcgt gcacaatgag 
     3481 catgagtatt gcgaaaaata acaacaacgc tacgcagcaa acagaacaaa aagctactag 
     3541 cgaagtaaaa aatgatagta ttaacttaaa attttgaaat tatgacagaa agagaacaca 
     3601 gagttaaaga tttgtttcaa attatcagaa caacaactca cgaagagcaa gaagaatacg 
     3661 taattgtaat cggaaaacat ctagcaacag aggcgagatt ctcaacaaga gaagaagcag 
     3721 aacaattcat tgaatcaaaa gattatgatt tgatttgggc attaattgct gcattgattg 
     3781 atgcaaaaga cgttcaagaa atggaagcac aacaggaaaa agacgtacaa aaagtagaga 
     3841 atgtaataca aaaacaaacc attaaagact tataattatg gcaataacaa aagcaatcgg 
     3901 aaagaatacc gtaggagacg gtaacaaaat gactgtaagg ttaaacaact attacagaag 
     3961 tacacacgat ttatcatacg tttggaaaaa tacgcaggcg gtcggtcctg tcgtgccatt 
     4021 cctgtgcgaa tatgcacaga ttgacgatac gcatgaaatt gatttatcgg caatggtaat 
     4081 tacacatcca acagtaggac cattatacgg gagcttcaaa ttacaattag atgtatatgt 
     4141 agcaccaatc aggctatacc aaaagttatt acataataac acaatgggga ttggtctgga 
     4201 tatgacaaag gtaaaattac ctgtaataca agtagatgga atgtcgacag atgataaccc 
     4261 gacaaattca aaccaatgga ctcaaataaa tccaagtgca ctactagcat atctagggct 
     4321 aagaggatgg ggtaaaatta aagcgtcaga cataagcata aaaaagaacg gagtaccact 
     4381 actagcatat tgggatatat ggaaaaacta ctatgcaaac aaacaagagc caaacgggaa 
     4441 agttctaagc acatatcata taatatcaaa aggaagtata aatggtactt ctgtagataa 
     4501 ttgggagaaa ttcaggattt taaaagtagg gaaaaacaac atacaaataa gcaaatggga 
     4561 taatcaaaac caagaattaa aagtatacga aggtattgta catatgtaca ataacggcga 
     4621 atcaaaaaga ggaacagtaa gagaactact gggagaagga aatttcgaca gtgcaagcag 
     4681 cttttataca tggagtatcg aacaaaaaaa ttttgagggt agtatatcaa taatgtacgg 
     4741 ggatagtctg aacataatag attttccaat aacaaaaata gacgaagtaa gagaaaaaat 
     4801 attagcattc ccttcaacat cgccatatat agtaccaaat gaaaaaccat actcgtattc 
     4861 agaaagagac aaagacggaa tgctaagaac aaaacaacca atgtacggac tagcggtaaa 
     4921 aacataccaa agcgacatct ttaacaattg gattcaaacc gaatggctag aaggagaaaa 
     4981 cggaataaat gcaattacag cagtagatac gagtataggt agtttcacaa tggataccct 
     5041 aaacctagca aaaaaggttt acaacatgtt aaatagaatc gcggtatcag acggaacata 
     5101 taaaagttgg atggaaacag tattctcagc gaaatatgta gaaagaaccg aaactcctat 
     5161 atactacgga ggtatgtctc aagaaatcat ttttgaagaa gtagtaagta catccgcaac 
     5221 aggggaagaa ccattaggaa cactagccgg aaaaggaaga ttagcaccaa ataaaaaagg 
     5281 aggaaaagta gtaataaaaa tagacgaacc ttcatacatc atcggaatat gctccattac 
     5341 accaagactc gactacagtc aagggaataa ttttacaatg aattgggaaa caatgaatga 
     5401 cttgcacaaa cctgcattag atatgattgg ttaccaagat ttaacaatgg agaaagcagc 
     5461 gtggtggaca gaggaacaca cgtcagatac cgaatttgcc caaaaatcaa taggaaaaac 
     5521 agtagcatgg gttgactaca tgacaaacta caacaaaaat tatggaaatt tcgctagtgg 
     5581 agaaaatgaa aactttatga cactagacag aaattacaat gtagaaaatc ctgactttac 
     5641 aacctatata gacccagcaa aatacaacgg aatatttgcc gaccaaagta gaagctctat 
     5701 gaacttttgg gtacaaatcg gtgtaaattg gaaagtaaga agaaaaataa gcgcaaaatc 
     5761 aattcctaac ctataaaaaa ataaattatg aaatatccaa aatatcacac accattttca 
     5821 aatatgaaag gtgtagaaat aaaagaaggt gaaacaatcg aaacaaaagt aagacgtatt 
     5881 acagaagaga aaactccaat aacagactca gctccaatcg tctatacaaa tagaacggac 
     5941 ggagtaatag caggatataa tattcgaacc gataggtttg aaatagccct atcagcaatg 
     6001 gataaagtaa acaaagcaaa aatagcaaca agaaacgcaa aaaacaaagt aagaggaatc 
     6061 cgatacaaat aagaaattga atcgaatacc gatacgcaag caggagaaac aagtgttgcg 
     6121 taaggcatag gaagccgtca ctacattaaa gatgaaccga ccgaagggat gtaaaaaaaa 
     6181 gtccttacgg tacgcatgta gtatta 
//
