FEATURES             Location/Qualifiers
     gene            39..872
                     /locus_tag="Alpa_01"
     CDS             39..872
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MSEELRTEPNAYFMTLTISDENYEILKNTCKSEDKNTIATKAIRLTLERIRKKTGKSIKHWFITELGHEKTERLHLHGIVWGIGTDQLIKEKWNYGITYTGNFVNEKTINYITKYMTKIDEDHPEFVGKVLCSKGIGAGYIKRADASKHKYEKGKTIETYRLRNGAKINLPIYYRNKLFTEEERELLFIDKIEKGFIYVLGTKVHRDDEEYYIQLLEEGRKKEAILYGEHNQDWEQQKYINRLRKQKKKQEQELNQLEIYWALERAKDYTQLETCPF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1419..1637
                     /locus_tag="Alpa_02"
     CDS             1419..1637
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MAATKFTAIYVNNDGKLIEKEIPGMNTYKIAEKFAIMLNDTEETKVVCVIESWKLYPNENEKKTNKNNLDSK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1597..1857
                     /locus_tag="Alpa_03"
     CDS             1597..1857
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MKKRQIKTIWIVNSNKFNTFKAFKRWLWYNLHTGEIIEGSQIWEDTIYKTYKIKKTERRLIVETTYDLEQEQKKYFENLQLKLFDK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1909..2139
                     /locus_tag="Alpa_04"
     CDS             1909..2139
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MEHLKTKKMKITGNQWIEIVRAISTMIIAIITTLCTQACTMSLSVSKNNSNSTQKTEQTSTSSVDSTHININPKNY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02719"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2143..2382
                     /locus_tag="Alpa_05"
     CDS             2143..2382
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MTNLKEAFIVRPLPESEEFIITIGNHLATAEKFKSRKAAEMRINKTDWNLVSALFFALKEADKWAEKNPELVKQNKEEE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2386..4332
                     /locus_tag="Alpa_06"
     CDS             2386..4332
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MSLQKNIGKNTIGDNNKMSVNLHTYNMSTHDLSTIFRNTQSAGTLVPNLVLLAQKGDTIDIDIESHVLTHPTVGPLFGSFKHENHIFSIPIRLYNSWLHNNRTKIGLNMSDIKLPQLSISINKTKDNPTPDNQWSQINPSCLLAYLGIRGYAYNTTTTSQEVTVQKMAVPLLGYFDIFKNYYANTQEENFYIIGATETITNIKVTQAEGAIHTSTTPDKINIGIASGDSVEITPKNTYEADELIITWFDMSTETTRTGKPTEFGTWSKTSGNWNVVMAPTQVGLLMSITPKNRVQLQDYPLEEIDEMRDKILSTKGNITSIPNNSNIALYDSFGKRLPNGKLNTTSSQYGLCLKTYNSDLLQNWINTEWIDGVNGISEVTAIDVTDGKLTMDALNLQQKVYNMLNRIAVSGGTYRDWLETVFTGGNYMERCETPIFEGGMSTEIVFQEVISNSASGEQPLGTLAGRGYDTGKQKGGHVKIKVTEPSFIMGIGSITPRIDYSQGNEFYNEFLTLDDIHKPALDGIGYQDSLNWQRAWWDDNRMEKNGRLQPSAGKTVAWLNYMTNINRTFGNFAINDNEAFMVLNRNYEMSPSAGTNETKIADLTTYIDPVKYNYIFAETNLDAMNFWVQTKFDIKVRRLISAKQIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /inference="similar to AA sequence:INSD:WP_005867318.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4337..4657
                     /locus_tag="Alpa_07"
     CDS             4337..4657
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MYKKTIIPGYTGRMKSVECFEGEQIEEKVRRIVNNNEPITDGAPIIFTEKKDGVRPEYNVRTDRWDIALDAMNKIDMARKAHKENEVKPEDFGNVPDKQNGSPSEN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4803..5867
                     /locus_tag="Alpa_08"
     CDS             4803..5867
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MALGGFFGAFANILGGLATSSIQRSDNEYLMNRQAELNKEQADYSTDLAKNYWDYTNFENSVKHLKEAGLNPALYYAKGGQGGSTGGGQAQGVGLPSTTPTMARIQAQGMGAQLQNVLSQVELNKATAKKTEAEAEKIAGADTKVAEREAEMLASQSEFNRRITRLQDSIEKLTNAQEQKTAAEYFYIQAQEKKVWEEVREQIVKSDIAEETKEAMIKKTGLENFNLMQAGIESITRQKLNSEQINYLKGQLAIGWANVAIGEKSVSNEADRIANDLMMGMKDLDRKDRELIKDWIYEGIHAGKEISGEILNWLMRGTPKTITEITSRLEEMFDAKGNETGSKMVKQTITKGAK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 18 and 19 "
                     /inference="protein motif:SignalP:4.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE.00802"
                     /note="1 probable transmembrane helix predicted by TMHMM
                     Signal peptide predicted by SignalP 4.0 (Signal peptide probability ) with cleavage site probability  between residues 18 and 19"
ORIGIN
        1 agtgtcggaa acaaaagcaa agggaatggc tagtgagaat gagcgaggaa ctaagaacag 
       61 aaccaaatgc ctacttcatg acactaacca tttccgatga aaactacgaa atactaaaaa 
      121 atacatgcaa atcagaggac aagaacacaa tagcaacaaa agcgatacgt cttacattag 
      181 aacgtatccg aaaaaaaact ggaaaatcta taaagcattg gtttattaca gaactaggac 
      241 acgagaaaac agaaagatta catttgcacg ggatagtttg gggaataggt acagaccaac 
      301 tgataaagga aaaatggaac tacggaataa cttataccgg gaactttgta aacgaaaaaa 
      361 caataaatta cataaccaaa tacatgacaa aaatagatga agatcatcca gaattcgttg 
      421 gaaaagtact atgctctaaa ggcataggag caggatacat aaaaagagct gacgcaagca 
      481 aacacaaata cgaaaaagga aaaaccatag aaacttacag gctacgaaac ggagcaaaaa 
      541 taaatttacc aatatattac agaaataaac tattcacaga agaagaaaga gaactactct 
      601 ttatcgacaa aatagaaaag ggattcattt acgtactagg aacaaaagtt catagagacg 
      661 atgaagaata ttatatacaa cttctcgaag agggaagaaa aaaagaagct atactctatg 
      721 gtgaacataa tcaagactgg gaacaacaaa aatatatcaa cagactacgg aaacaaaaga 
      781 aaaaacaaga acaagaactc aatcaactag aaatatattg ggcactagaa agagctaaag 
      841 actacacaca actagaaaca tgtccgttct gatgactgct aaccagccgc caaaggggta 
      901 attttctcta ggaagtcgct tcgctccgat tttaacgcct gctaacgcaa cggcggcgct 
      961 ggacggcacg ggacgccgtc tacgcttacg ctgaaaggct tccagcctta cagcgaccta 
     1021 gcggacgaga accacagcaa aaggcagaaa tctgaataat caaacataag ttttatttaa 
     1081 cacctcgggc cgggtggcca agagtgtata gcgggagggt gagatatgcc ttaatccggg 
     1141 agacagctac cttaagacca agataaggga gtgacgtgca cccgacctat ggtcgtggtg 
     1201 tgcgacttcg tcgatatcaa ggtgctagtc gctaaggagg gctatgcgcc ctctattgct 
     1261 ccatcaccgt tcaaacgcca cggaggctta aagatactat tactaataaa ggttaaaagc 
     1321 ttcagacaaa taccagaaaa tttgaagaaa tcagaaaaaa caagtatatt tgcaatgtaa 
     1381 taaaaaacat aagtataaca atttaaaatt taaaagctat ggcagcaaca aaattcacag 
     1441 caatttatgt aaacaatgac ggtaaattaa tcgaaaaaga aataccgggt atgaacacgt 
     1501 acaaaatagc agaaaaattc gctataatgc taaatgacac agaagaaaca aaagtagtat 
     1561 gtgtaatcga atcatggaaa ttatatccta acgaaaatga aaaaaagaca aataaaaaca 
     1621 atttggatag taaatagcaa taaattcaat acatttaaag cgttcaaaag atggctatgg 
     1681 tacaatctcc acacaggaga aataatagaa ggctctcaaa tttgggaaga tacaatttac 
     1741 aaaacttaca aaattaaaaa aacagaaagg aggctaatag tagaaactac ttacgattta 
     1801 gaacaagaac aaaaaaaata cttcgaaaat ttacaattaa aactatttga caaatgatac 
     1861 taggaatatt aacattacta ttgcttataa gcataggaat gatattttat ggaacattta 
     1921 aaaactaaaa aaatgaaaat cacaggtaac caatggatag aaattgtaag agcaatttcc 
     1981 acaatgatta ttgcaatcat tacaacacta tgtacacaag cgtgtacaat gagtttaagc 
     2041 gtgagtaaaa ataactcaaa ctcaacgcaa aaaaccgaac aaacatcaac gtcaagcgtt 
     2101 gacagtactc acattaatat taatcctaaa aactattaaa ttatgacaaa tctaaaagag 
     2161 gcattcatag taagaccact accagaaagt gaagaattca ttattacaat cggaaaccac 
     2221 ttggcaaccg cagaaaaatt caaatcaaga aaagctgcag aaatgcgaat caataaaaca 
     2281 gactggaatc tagtaagtgc actattcttc gcactcaaag aagcggacaa atgggctgaa 
     2341 aaaaatccag aattagtcaa acaaaataaa gaggaggaat aaactatgtc attacaaaaa 
     2401 aacattggta aaaacaccat aggtgacaac aataaaatgt cagtcaacct acacacctat 
     2461 aacatgagta ctcacgactt gagtacaata ttcagaaaca ctcaaagcgc aggaacacta 
     2521 gttccaaacc ttgtactact agctcaaaaa ggtgatacaa tagatatcga catagaaagc 
     2581 catgtactga cacatccaac agtaggacca ctattcggaa gcttcaaaca cgaaaatcac 
     2641 atattcagta tacctatcag actttacaac agttggctgc acaacaaccg aacaaaaatc 
     2701 ggtctaaata tgtcagacat caaattacca caattatcaa taagtatcaa taaaacaaaa 
     2761 gataatccaa caccagataa tcaatggtca caaataaacc caagttgtct actagcatac 
     2821 ttagggatac gaggatatgc atataataca acaacaacaa gccaagaagt aacagttcaa 
     2881 aaaatggctg tgccattact tggatacttt gacatcttca aaaattacta tgccaataca 
     2941 caagaagaaa atttctatat tattggagca accgaaacaa ttacaaatat aaaagtaaca 
     3001 caagcagaag gagctataca cacctcaaca acaccagata aaataaatat aggaattgca 
     3061 agcggagaca gcgttgaaat aactccaaaa aatacatacg aagcagacga acttattata 
     3121 acgtggtttg atatgtcaac agaaacaact aggacaggta aaccaactga attcggaaca 
     3181 tggtctaaaa cttccggaaa ttggaacgta gtaatggcac caacacaagt agggctacta 
     3241 atgtcaatca caccaaaaaa ccgtgtacaa ttacaagatt atcctctaga agagattgac 
     3301 gaaatgcgtg ataaaatatt atcaacaaaa ggaaatatca caagcatacc aaataatagt 
     3361 aatatagctc tatatgattc attcggtaaa agactaccaa acggaaaact aaatacaacc 
     3421 agttcacaat acggactatg cctaaaaaca tataatagtg accttcttca aaactggatc 
     3481 aataccgaat ggatagacgg agtaaacgga attagcgaag tgacagcaat agatgtaaca 
     3541 gacggcaaac ttacaatgga tgccttaaat ttacaacaaa aagtttacaa catgctaaac 
     3601 agaatcgctg taagcggcgg tacatacaga gactggttag aaaccgtatt tacaggaggc 
     3661 aactacatgg aaagatgtga aacacccata ttcgagggtg gtatgtcaac tgaaatcgta 
     3721 ttccaagaag tcataagcaa cagcgcaagc ggagagcaac cactaggaac actagcaggt 
     3781 agaggatatg acacaggtaa acaaaaagga ggtcacgtaa aaatcaaagt aacagaacca 
     3841 tctttcatta tgggcattgg ttcaataact ccaagaatcg attactcaca aggtaatgaa 
     3901 ttttacaacg aattcctaac actggacgat attcacaaac cagcactaga cggaatcgga 
     3961 taccaagatt cactaaactg gcaaagagca tggtgggatg ataaccgcat ggaaaagaac 
     4021 ggtagattac aaccatcagc aggaaaaacg gtcgcttggc ttaactacat gacaaatatc 
     4081 aacagaacgt tcggaaactt tgcaatcaac gataacgagg catttatggt tctcaataga 
     4141 aactatgaga tgagcccatc agcaggaaca aacgagacca aaatagccga cttaacaaca 
     4201 tacatagacc cagtaaaata caactacatt tttgcagaga caaatctaga tgctatgaac 
     4261 ttctgggtac aaacaaagtt tgacattaaa gtgagacgtt taatcagtgc aaaacaaatt 
     4321 ccaaatttat aacattatgt ataaaaaaac aattatacca ggatataccg gacgcatgaa 
     4381 aagcgtagaa tgcttcgagg gtgaacaaat cgaagaaaaa gtaagaagaa tcgttaacaa 
     4441 caacgaacca atcacagatg gagcaccaat catctttaca gaaaaaaaag acggtgtacg 
     4501 ccctgaatac aacgtacgta cggacagatg ggacatagca ctagatgcta tgaataagat 
     4561 agacatggca agaaaggcac ataaagaaaa cgaagtaaaa ccagaagatt tcggaaacgt 
     4621 tcctgataaa caaaacgggt cgcccagtga aaactgatgc gagtcagtag ctgcacgtct 
     4681 agaggggaat tgtaaaaaat tcccctaata aattgaacga cggtacgcat ctactataat 
     4741 atatcaagta tatagaaaag agcttttaga aaaagctcga aaacatgtaa atataaatta 
     4801 ttatggcact aggaggattt tttggagcat tcgccaacat attaggcgga cttgcaacat 
     4861 caagcataca aagatcagat aacgaatatc taatgaatag acaagcggag ctcaacaaag 
     4921 agcaagccga ctattcaaca gacctagcaa aaaattactg ggactacaca aacttcgaaa 
     4981 acagtgtaaa acacttaaaa gaagccggat taaatcctgc attatactat gcaaaaggag 
     5041 gacaaggagg atcaactgga ggaggacaag cccaaggagt aggactacca tctacgacac 
     5101 caacaatggc aagaatacaa gcccaaggaa tgggagcaca attacaaaac gtattatcac 
     5161 aagtagaact caacaaggca acagcaaaaa aaacagaggc agaagccgaa aaaattgcag 
     5221 gagctgacac aaaagtagca gaacgtgaag ccgaaatgct agcatcacaa agcgagttca 
     5281 acagacgaat caccagacta caagacagca tagaaaagct aaccaacgca caagaacaaa 
     5341 aaacggcagc ggaatacttc tatattcaag cacaagaaaa gaaagtttgg gaagaagtac 
     5401 gcgaacaaat tgtaaaatct gacatagcag aagaaacaaa agaagccatg attaaaaaaa 
     5461 cagggctaga aaacttcaat ctgatgcaag caggtataga atcaatcaca aggcaaaaac 
     5521 tcaacagcga gcaaataaac taccttaaag ggcaactagc aatcggatgg gctaacgtgg 
     5581 caataggtga aaaatcagta tcaaacgaag ccgacagaat cgcaaatgat ttaatgatgg 
     5641 gaatgaaaga cctagaccga aaagaccgcg aacttatcaa agattggata tacgaaggta 
     5701 tacacgcagg aaaagaaata tccggagaaa ttctcaattg gctaatgaga ggtacaccaa 
     5761 aaacaatcac agaaataaca agccgactag aagaaatgtt tgatgctaaa ggaaatgaaa 
     5821 caggttcaaa aatggtaaaa caaactatta cgaaaggagc gaaataatgt gtctatatcc 
     5881 gaaactcata agaaataaaa aatatttgcc aacaaaaaag aataactata atccgccaaa 
     5941 aatggtagat cctagaacgg catatataac cgcagcatgc ggaaaatgct tagagtgtcg 
     6001 gaaacaaaag caaagggaat ggctagtgag aatgagcgag gaactaagaa cagaaccaaa 
     6061 tgcctacttc atgacactaa ccatttccga tgaaaactac gaaatactaa aaaatacatg 
     6121 caaatcagag gacaagaaca caatagcaac aaaagcgata cgtcttacat tagaacgtat 
     6181 ccgaaaaaaa ctagg 
//
