bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-10_CDS_annotation_glimmer3.pl_2_4

Length=90
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  euc:EC1_19170  Predicted transcriptional regulators                 34.7    1.3
  tva:TVAG_063010  hypothetical protein                               33.9    3.6
  vej:VEJY3_05140  hypothetical protein                               31.6    6.0
  pdi:BDI_2480  two-component response regulator                      32.3    7.5
  osp:Odosp_2659  hypothetical protein                                32.3    9.9


> euc:EC1_19170  Predicted transcriptional regulators
Length=259

 Score = 34.7 bits (78),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 18/57 (32%), Positives = 34/57 (60%), Gaps = 0/57 (0%)

Query  30   ILTVGQYNVTPIVFDTQEQAETFLDTVFKLTNFDLAIIGAMCQRLNELNEQNKSNSK  86
            IL +   NV+P   + Q+ A+ F + V + TN D++++  + +  N+L+EQN+   K
Sbjct  176  ILILKDNNVSPDNIEAQKAAQKFWNIVMEFTNGDMSLLPELMKFNNQLDEQNEWTKK  232


> tva:TVAG_063010  hypothetical protein
Length=1170

 Score = 33.9 bits (76),  Expect = 3.6, Method: Composition-based stats.
 Identities = 17/57 (30%), Positives = 29/57 (51%), Gaps = 4/57 (7%)

Query  36   YNVTPIVFD----TQEQAETFLDTVFKLTNFDLAIIGAMCQRLNELNEQNKSNSKNE  88
            Y  +P++FD     + +   FL   F+L N DL+++  +    N  N +N  N+K E
Sbjct  660  YLASPLLFDMSFVVRYEFAQFLSRFFELQNLDLSLLEKIQNERNSKNSKNTKNTKTE  716


> vej:VEJY3_05140  hypothetical protein
Length=81

 Score = 31.6 bits (70),  Expect = 6.0, Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 0/42 (0%)

Query  47  EQAETFLDTVFKLTNFDLAIIGAMCQRLNELNEQNKSNSKNE  88
           ++ E F+   F    FD A+IG +C+ L+ L    K  + NE
Sbjct  20  DRIENFIYEAFSRNGFDFAVIGFLCEMLDRLYNAVKGITWNE  61


> pdi:BDI_2480  two-component response regulator
Length=243

 Score = 32.3 bits (72),  Expect = 7.5, Method: Compositional matrix adjust.
 Identities = 16/46 (35%), Positives = 25/46 (54%), Gaps = 0/46 (0%)

Query  36   YNVTPIVFDTQEQAETFLDTVFKLTNFDLAIIGAMCQRLNELNEQN  81
            Y +   +FDTQ+Q     D V KLT  +  ++  +C   NE+ E+N
Sbjct  134  YKLGNFLFDTQKQTLAIGDKVTKLTTKECELLSLLCAHANEILERN  179


> osp:Odosp_2659  hypothetical protein
Length=531

 Score = 32.3 bits (72),  Expect = 9.9, Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 13/62 (21%)

Query  12   RQDVVKVSCVKEGEEDKFILTVGQYNVTPIVFDTQEQAETFLDTVFKLTNFDLAIIGAMC  71
            R D    S + +G  D F++  GQYNVT I +D Q  AE             LAI G + 
Sbjct  208  RVDPFNYSYI-DGNGDMFVIDPGQYNVTTIGYDPQIGAEL------------LAITGKIY  254

Query  72   QR  73
             R
Sbjct  255  PR  256



Lambda      K        H        a         alpha
   0.314    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026330890