bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-12_CDS_annotation_glimmer3.pl_2_1

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  lcm:102349520  MRVI1; murine retrovirus integration site 1 homolog  39.7    1.1


> lcm:102349520  MRVI1; murine retrovirus integration site 1 homolog
Length=1139

 Score = 39.7 bits (91),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 14/133 (11%)

Query  212  LDNEAKGILNKYLDQEQQLDLNVKAADYYQRMSAGYLSYAETKKALADEALAAARTRGQK  271
            L   A   + K   Q  ++D  V  A      +   LS AE+K+ALA+E L AA  R ++
Sbjct  181  LKESASETVAKSYKQVTEMDDKVSKATLMMHAAQEKLSVAESKRALAEEKLKAAMERVEE  240

Query  272  ISNEVASRIAESQIAANIAANQSSEAYHNEELKLGLSQDNA-RSKNIEEWYRSRNEKKRY  330
            +  ++ +      +A   AA + S       + LG+SQ    RS  I E +    E+++ 
Sbjct  241  VQCQLVA------LAERTAATEQS-------MDLGMSQAACTRSSKIRELHFQTKEEEKL  287

Query  331  KYYDADKWVEYGT  343
              +  D  V+Y  
Sbjct  288  VSFTVDHNVQYCC  300



Lambda      K        H        a         alpha
   0.311    0.125    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 697550940352